data_LMF # _chem_comp.id LMF _chem_comp.name "NZ(N-METHYL THIOFORMAMIDE) LYSINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H17 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2012-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 219.304 _chem_comp.one_letter_code K _chem_comp.three_letter_code LMF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LMF N N N 0 1 N N N ? ? ? -3.633 -1.643 0.684 N LMF 1 LMF CA CA C 0 1 N N N ? ? ? -3.625 -0.508 -0.248 CA LMF 2 LMF C C C 0 1 N N N ? ? ? -4.917 0.257 -0.121 C LMF 3 LMF O O O 0 1 N N N ? ? ? -5.592 0.141 0.875 O LMF 4 LMF CB CB C 0 1 N N N ? ? ? -2.451 0.416 0.083 CB LMF 5 LMF CG CG C 0 1 N N N ? ? ? -1.134 -0.323 -0.167 CG LMF 6 LMF CD CD C 0 1 N N N ? ? ? 0.040 0.601 0.164 CD LMF 7 LMF CE CE C 0 1 N N N ? ? ? 1.356 -0.137 -0.086 CE LMF 8 LMF NZ NZ N 0 1 N N N ? ? ? 2.480 0.747 0.231 NZ LMF 9 LMF C1 C1 C 0 1 N N N ? ? ? 3.746 0.307 0.086 C1 LMF 10 LMF S S S 0 1 N N N ? ? ? 4.040 -1.285 -0.469 S LMF 11 LMF N1 N1 N 0 1 N N N ? ? ? 4.780 1.121 0.378 N1 LMF 12 LMF CM CM C 0 1 N N N ? ? ? 6.155 0.643 0.219 CM LMF 13 LMF OXT OXT O 0 1 N Y N ? ? ? -5.318 1.067 -1.113 OXT LMF 14 LMF H 1HN H 0 1 N N N ? ? ? -3.731 -1.256 1.611 H LMF 15 LMF H2 2HN H 0 1 N Y N ? ? ? -4.475 -2.165 0.498 H2 LMF 16 LMF HA HA H 0 1 N N N ? ? ? -3.520 -0.877 -1.269 HA LMF 17 LMF HB1 1HB H 0 1 N N N ? ? ? -2.507 0.714 1.129 HB1 LMF 18 LMF HB2 2HB H 0 1 N N N ? ? ? -2.496 1.302 -0.551 HB2 LMF 19 LMF HG1 1HG H 0 1 N N N ? ? ? -1.078 -0.621 -1.214 HG1 LMF 20 LMF HG2 2HG H 0 1 N N N ? ? ? -1.089 -1.209 0.466 HG2 LMF 21 LMF HD1 1HD H 0 1 N N N ? ? ? -0.017 0.899 1.211 HD1 LMF 22 LMF HD2 2HD H 0 1 N N N ? ? ? -0.006 1.487 -0.469 HD2 LMF 23 LMF HE1 1HE H 0 1 N N N ? ? ? 1.412 -0.436 -1.133 HE1 LMF 24 LMF HE2 2HE H 0 1 N N N ? ? ? 1.401 -1.024 0.547 HE2 LMF 25 LMF HZ HZ H 0 1 N N N ? ? ? 2.313 1.649 0.546 HZ LMF 26 LMF HN1 HN1 H 0 1 N N N ? ? ? 4.613 2.023 0.692 HN1 LMF 27 LMF HM1 1HM H 0 1 N N N ? ? ? 6.850 1.434 0.501 HM1 LMF 28 LMF HM2 2HM H 0 1 N N N ? ? ? 6.314 -0.225 0.860 HM2 LMF 29 LMF HM3 3HM H 0 1 N N N ? ? ? 6.326 0.363 -0.820 HM3 LMF 30 LMF HXT HXT H 0 1 N Y N ? ? ? -6.147 1.558 -1.031 HXT LMF 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LMF N CA SING N N 1 LMF N H SING N N 2 LMF N H2 SING N N 3 LMF CA C SING N N 4 LMF CA CB SING N N 5 LMF CA HA SING N N 6 LMF C O DOUB N N 7 LMF C OXT SING N N 8 LMF CB CG SING N N 9 LMF CB HB1 SING N N 10 LMF CB HB2 SING N N 11 LMF CG CD SING N N 12 LMF CG HG1 SING N N 13 LMF CG HG2 SING N N 14 LMF CD CE SING N N 15 LMF CD HD1 SING N N 16 LMF CD HD2 SING N N 17 LMF CE NZ SING N N 18 LMF CE HE1 SING N N 19 LMF CE HE2 SING N N 20 LMF NZ C1 SING N N 21 LMF NZ HZ SING N N 22 LMF C1 S DOUB N N 23 LMF C1 N1 SING N N 24 LMF N1 CM SING N N 25 LMF N1 HN1 SING N N 26 LMF CM HM1 SING N N 27 LMF CM HM2 SING N N 28 LMF CM HM3 SING N N 29 LMF OXT HXT SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LMF SMILES CACTVS 2.87 "CNC(=S)NCCCCC(N)C(O)=O" LMF SMILES_CANONICAL CACTVS 2.87 "CNC(=S)NCCCCC(N)C(O)=O" LMF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CNC(=S)NCCCC[C@@H](C(=O)O)N" LMF SMILES "OpenEye OEToolkits" 1.5.0 "CNC(=S)NCCCCC(C(=O)O)N" LMF InChI InChI 1.03 "InChI=1S/C8H17N3O2S/c1-10-8(14)11-5-3-2-4-6(9)7(12)13/h6H,2-5,9H2,1H3,(H,12,13)(H2,10,11,14)" LMF InChIKey InChI 1.03 ZRPGWKQIWAUACK-UHFFFAOYSA-N # _pdbx_chem_comp_identifier.comp_id LMF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.5.0 _pdbx_chem_comp_identifier.identifier "(2S)-2-amino-6-(methylcarbamothioylamino)hexanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LMF "Create component" 1999-07-08 RCSB LMF "Modify descriptor" 2011-06-04 RCSB ##