data_LMO # _chem_comp.id LMO _chem_comp.name "dodecyl 6-O-alpha-D-galactopyranosyl-beta-D-glucopyranoside" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C24 H46 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "DDMB; dodecyl melibioside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-21 _chem_comp.pdbx_modified_date 2021-07-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.615 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L16 _chem_comp.pdbx_subcomponent_list "XKJ GLA" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LMO C13 C1 C 0 1 N N N -27.572 47.862 -4.402 4.613 -0.460 -0.068 C6 XKJ 1 LMO C17 C2 C 0 1 N N S -26.403 45.382 -7.201 4.972 3.367 -0.272 C3 XKJ 2 LMO C24 C3 C 0 1 N N N -28.439 48.513 -10.594 -1.097 2.420 0.216 C24 XKJ 3 LMO C26 C4 C 0 1 N N N -30.377 46.899 -11.330 -3.537 1.882 0.225 C26 XKJ 4 LMO C28 C5 C 0 1 N N N -30.157 44.346 -11.878 -5.977 1.344 0.234 C28 XKJ 5 LMO C14 C12 C 0 1 N N R -27.754 47.036 -5.743 4.288 0.976 -0.485 C5 XKJ 6 LMO C16 C13 C 0 1 N N S -26.820 45.788 -5.756 5.337 1.926 0.099 C4 XKJ 7 LMO C18 C14 C 0 1 N N R -27.118 47.615 -8.051 2.581 2.655 -0.351 C1 XKJ 8 LMO C19 C15 C 0 1 N N R -25.929 46.628 -7.965 3.560 3.673 0.239 C2 XKJ 9 LMO C23 C16 C 0 1 N N N -27.885 49.422 -9.461 0.256 2.073 -0.408 C23 XKJ 10 LMO C25 C17 C 0 1 N N N -29.904 48.023 -10.378 -2.184 1.535 -0.399 C25 XKJ 11 LMO C27 C18 C 0 1 N N N -29.479 45.627 -11.328 -4.624 0.998 -0.390 C27 XKJ 12 LMO C29 C19 C 0 1 N N N -30.506 43.290 -10.800 -7.063 0.460 -0.380 C29 XKJ 13 LMO C30 C20 C 0 1 N N N -29.293 42.422 -10.361 -8.417 0.806 0.244 C30 XKJ 14 LMO C31 C21 C 0 1 N N N -29.008 41.174 -11.242 -9.503 -0.078 -0.371 C31 XKJ 15 LMO C32 C22 C 0 1 N N N -30.252 40.325 -11.597 -10.857 0.269 0.253 C32 XKJ 16 LMO C33 C23 C 0 1 N N N -31.140 39.990 -10.380 -11.943 -0.616 -0.362 C33 XKJ 17 LMO C34 C24 C 0 1 N N N -30.358 39.452 -9.186 -13.297 -0.269 0.262 C34 XKJ 18 LMO O08 O3 O 0 1 N N N -26.180 47.916 -4.037 3.703 -1.359 -0.707 O6 XKJ 19 LMO O15 O7 O 0 1 N N N -27.546 47.987 -6.775 2.995 1.334 0.007 O5 XKJ 20 LMO O20 O8 O 0 1 N N N -27.547 44.734 -5.190 6.622 1.606 -0.436 O4 XKJ 21 LMO O21 O9 O 0 1 N N N -25.572 46.265 -9.263 3.181 4.990 -0.165 O2 XKJ 22 LMO O22 O10 O 0 1 N N N -26.788 48.782 -8.780 1.271 2.899 0.166 O1 XKJ 23 LMO O35 O11 O 0 1 N N N -25.300 44.526 -7.074 5.904 4.267 0.330 O3 XKJ 24 LMO C04 C9 C 0 1 N N S -25.356 48.821 -4.755 3.921 -2.733 -0.383 C1 GLA 25 LMO C03 C8 C 0 1 N N R -23.837 48.492 -4.591 3.069 -3.615 -1.300 C2 GLA 26 LMO C02 C7 C 0 1 N N S -23.528 48.565 -3.070 1.588 -3.309 -1.059 C3 GLA 27 LMO C01 C6 C 0 1 N N R -23.816 49.996 -2.549 1.267 -3.531 0.422 C4 GLA 28 LMO C06 C10 C 0 1 N N R -25.274 50.403 -2.899 2.188 -2.653 1.273 C5 GLA 29 LMO C11 C11 C 0 1 N N N -25.443 51.938 -2.771 1.915 -2.913 2.756 C6 GLA 30 LMO O10 O5 O 0 1 N N N -23.677 47.182 -5.037 3.397 -3.343 -2.664 O2 GLA 31 LMO O09 O4 O 0 1 N N N -22.163 48.300 -2.944 0.784 -4.179 -1.858 O3 GLA 32 LMO O07 O2 O 0 1 N N N -22.898 50.847 -3.174 1.474 -4.905 0.755 O4 GLA 33 LMO O05 O1 O 0 1 N N N -25.660 50.095 -4.226 3.550 -2.967 0.978 O5 GLA 34 LMO O12 O6 O 0 1 N N N -26.629 52.105 -2.036 2.690 -2.012 3.549 O6 GLA 35 LMO H131 H1 H 0 0 N N N -27.949 48.885 -4.551 5.633 -0.703 -0.365 H61 XKJ 36 LMO H132 H2 H 0 0 N N N -28.141 47.376 -3.596 4.517 -0.554 1.014 H62 XKJ 37 LMO H171 H3 H 0 0 N N N -27.248 44.908 -7.722 5.001 3.483 -1.356 H3 XKJ 38 LMO H241 H4 H 0 0 N N N -27.790 47.628 -10.672 -1.055 2.249 1.292 H241 XKJ 39 LMO H242 H5 H 0 0 N N N -28.402 49.079 -11.536 -1.329 3.467 0.023 H242 XKJ 40 LMO H262 H6 H 0 0 N N N -30.398 47.302 -12.353 -3.495 1.711 1.301 H262 XKJ 41 LMO H261 H7 H 0 0 N N N -31.393 46.602 -11.032 -3.769 2.929 0.032 H261 XKJ 42 LMO H281 H8 H 0 0 N N N -31.088 44.641 -12.384 -5.935 1.174 1.310 H281 XKJ 43 LMO H282 H9 H 0 0 N N N -29.475 43.882 -12.606 -6.208 2.392 0.041 H282 XKJ 44 LMO H141 H17 H 0 0 N N N -28.794 46.679 -5.773 4.297 1.049 -1.573 H5 XKJ 45 LMO H161 H18 H 0 0 N N N -25.916 46.010 -5.170 5.357 1.824 1.184 H4 XKJ 46 LMO H181 H19 H 0 0 N N N -27.937 47.093 -8.568 2.567 2.750 -1.436 H1 XKJ 47 LMO H191 H20 H 0 0 N N N -25.094 47.100 -7.426 3.545 3.605 1.327 H2 XKJ 48 LMO H232 H21 H 0 0 N N N -27.535 50.369 -9.897 0.488 1.026 -0.215 H232 XKJ 49 LMO H231 H22 H 0 0 N N N -28.688 49.626 -8.738 0.215 2.244 -1.484 H231 XKJ 50 LMO H252 H23 H 0 0 N N N -30.573 48.885 -10.513 -2.225 1.706 -1.475 H252 XKJ 51 LMO H251 H24 H 0 0 N N N -29.988 47.651 -9.346 -1.952 0.488 -0.206 H251 XKJ 52 LMO H271 H25 H 0 0 N N N -29.168 45.430 -10.291 -4.665 1.168 -1.465 H271 XKJ 53 LMO H272 H26 H 0 0 N N N -28.592 45.835 -11.944 -4.392 -0.050 -0.197 H272 XKJ 54 LMO H291 H27 H 0 0 N N N -30.897 43.813 -9.915 -7.105 0.630 -1.456 H291 XKJ 55 LMO H292 H28 H 0 0 N N N -31.282 42.623 -11.205 -6.832 -0.588 -0.187 H292 XKJ 56 LMO H302 H29 H 0 0 N N N -29.478 42.076 -9.333 -8.375 0.636 1.319 H302 XKJ 57 LMO H301 H30 H 0 0 N N N -28.397 43.060 -10.377 -8.648 1.854 0.051 H301 XKJ 58 LMO H312 H31 H 0 0 N N N -28.298 40.530 -10.702 -9.545 0.093 -1.447 H312 XKJ 59 LMO H311 H32 H 0 0 N N N -28.550 41.517 -12.181 -9.272 -1.125 -0.178 H311 XKJ 60 LMO H322 H33 H 0 0 N N N -30.858 40.884 -12.326 -10.815 0.098 1.329 H322 XKJ 61 LMO H321 H34 H 0 0 N N N -29.912 39.382 -12.049 -11.088 1.316 0.060 H321 XKJ 62 LMO H331 H35 H 0 0 N N N -31.664 40.906 -10.069 -11.985 -0.445 -1.438 H331 XKJ 63 LMO H332 H36 H 0 0 N N N -31.876 39.231 -10.684 -11.712 -1.663 -0.169 H332 XKJ 64 LMO H343 H37 H 0 0 N N N -31.052 39.236 -8.360 -14.071 -0.899 -0.176 H343 XKJ 65 LMO H342 H38 H 0 0 N N N -29.835 38.529 -9.476 -13.255 -0.440 1.338 H342 XKJ 66 LMO H341 H39 H 0 0 N N N -29.623 40.203 -8.861 -13.528 0.778 0.069 H341 XKJ 67 LMO H201 H44 H 0 0 N N N -27.809 44.967 -4.307 7.335 2.173 -0.112 HO4 XKJ 68 LMO H211 H45 H 0 0 N N N -24.842 45.658 -9.233 2.295 5.249 0.121 HO2 XKJ 69 LMO H351 H46 H 0 0 N N N -25.559 43.742 -6.604 5.733 5.199 0.137 HO3 XKJ 70 LMO H041 H13 H 0 0 N N N -25.601 48.786 -5.827 4.974 -2.977 -0.520 H1 GLA 71 LMO H031 H12 H 0 0 N N N -23.223 49.216 -5.147 3.265 -4.665 -1.081 H2 GLA 72 LMO H021 H11 H 0 0 N N N -24.146 47.836 -2.526 1.380 -2.273 -1.326 H3 GLA 73 LMO H011 H10 H 0 0 N N N -23.692 50.012 -1.456 0.228 -3.262 0.614 H4 GLA 74 LMO H061 H14 H 0 0 N N N -25.952 49.917 -2.182 1.999 -1.603 1.048 H5 GLA 75 LMO H111 H15 H 0 0 N N N -24.589 52.379 -2.236 0.855 -2.760 2.963 H61 GLA 76 LMO H112 H16 H 0 0 N N N -25.533 52.403 -3.764 2.188 -3.940 3.001 H62 GLA 77 LMO H101 H42 H 0 0 N N N -22.765 46.929 -4.958 4.322 -3.515 -2.889 HO2 GLA 78 LMO H091 H41 H 0 0 N N N -21.917 48.332 -2.027 0.935 -4.091 -2.809 HO3 GLA 79 LMO H071 H40 H 0 0 N N N -23.041 51.739 -2.880 0.924 -5.519 0.251 HO4 GLA 80 LMO H121 H43 H 0 0 N N N -26.800 53.032 -1.916 2.566 -2.120 4.502 HO6 GLA 81 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LMO C28 C27 SING N N 1 LMO C28 C29 SING N N 2 LMO C32 C31 SING N N 3 LMO C32 C33 SING N N 4 LMO C26 C27 SING N N 5 LMO C26 C25 SING N N 6 LMO C31 C30 SING N N 7 LMO C29 C30 SING N N 8 LMO C24 C25 SING N N 9 LMO C24 C23 SING N N 10 LMO C33 C34 SING N N 11 LMO C23 O22 SING N N 12 LMO O21 C19 SING N N 13 LMO O22 C18 SING N N 14 LMO C18 C19 SING N N 15 LMO C18 O15 SING N N 16 LMO C19 C17 SING N N 17 LMO C17 O35 SING N N 18 LMO C17 C16 SING N N 19 LMO O15 C14 SING N N 20 LMO C16 C14 SING N N 21 LMO C16 O20 SING N N 22 LMO C14 C13 SING N N 23 LMO O10 C03 SING N N 24 LMO C04 C03 SING N N 25 LMO C04 O05 SING N N 26 LMO C04 O08 SING N N 27 LMO C03 C02 SING N N 28 LMO C13 O08 SING N N 29 LMO O05 C06 SING N N 30 LMO O07 C01 SING N N 31 LMO C02 O09 SING N N 32 LMO C02 C01 SING N N 33 LMO C06 C11 SING N N 34 LMO C06 C01 SING N N 35 LMO C11 O12 SING N N 36 LMO C13 H131 SING N N 37 LMO C13 H132 SING N N 38 LMO C17 H171 SING N N 39 LMO C24 H241 SING N N 40 LMO C24 H242 SING N N 41 LMO C26 H262 SING N N 42 LMO C26 H261 SING N N 43 LMO C28 H281 SING N N 44 LMO C28 H282 SING N N 45 LMO C01 H011 SING N N 46 LMO C02 H021 SING N N 47 LMO C03 H031 SING N N 48 LMO C04 H041 SING N N 49 LMO C06 H061 SING N N 50 LMO C11 H111 SING N N 51 LMO C11 H112 SING N N 52 LMO C14 H141 SING N N 53 LMO C16 H161 SING N N 54 LMO C18 H181 SING N N 55 LMO C19 H191 SING N N 56 LMO C23 H232 SING N N 57 LMO C23 H231 SING N N 58 LMO C25 H252 SING N N 59 LMO C25 H251 SING N N 60 LMO C27 H271 SING N N 61 LMO C27 H272 SING N N 62 LMO C29 H291 SING N N 63 LMO C29 H292 SING N N 64 LMO C30 H302 SING N N 65 LMO C30 H301 SING N N 66 LMO C31 H312 SING N N 67 LMO C31 H311 SING N N 68 LMO C32 H322 SING N N 69 LMO C32 H321 SING N N 70 LMO C33 H331 SING N N 71 LMO C33 H332 SING N N 72 LMO C34 H343 SING N N 73 LMO C34 H342 SING N N 74 LMO C34 H341 SING N N 75 LMO O07 H071 SING N N 76 LMO O09 H091 SING N N 77 LMO O10 H101 SING N N 78 LMO O12 H121 SING N N 79 LMO O20 H201 SING N N 80 LMO O21 H211 SING N N 81 LMO O35 H351 SING N N 82 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LMO SMILES ACDLabs 12.01 "C(OC1C(C(C(C(CO)O1)O)O)O)C2C(C(O)C(C(O2)OCCCCCCCCCCCC)O)O" LMO InChI InChI 1.03 "InChI=1S/C24H46O11/c1-2-3-4-5-6-7-8-9-10-11-12-32-23-21(30)20(29)18(27)16(35-23)14-33-24-22(31)19(28)17(26)15(13-25)34-24/h15-31H,2-14H2,1H3/t15-,16-,17+,18-,19+,20+,21-,22-,23-,24+/m1/s1" LMO InChIKey InChI 1.03 HBVAWIPMNSJELA-RWNQQKCBSA-N LMO SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCO[C@@H]1O[C@H](CO[C@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@H]1O" LMO SMILES CACTVS 3.385 "CCCCCCCCCCCCO[CH]1O[CH](CO[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O" LMO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O" LMO SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCOC1C(C(C(C(O1)COC2C(C(C(C(O2)CO)O)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LMO "SYSTEMATIC NAME" ACDLabs 12.01 "dodecyl 6-O-alpha-D-galactopyranosyl-beta-D-glucopyranoside" LMO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R},4~{S},5~{R},6~{R})-2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-6-dodecoxy-3,4,5-tris(oxidanyl)oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 LMO DDMB AUTHOR ? 2 LMO "dodecyl melibioside" AUTHOR ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LMO "Create component" 2020-12-21 RCSB LMO "Initial release" 2021-08-04 RCSB ##