data_LMS # _chem_comp.id LMS _chem_comp.name "[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDRO-2-FURANYL]METHYL SULFAMATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N6 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-09-11 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.320 _chem_comp.one_letter_code N _chem_comp.three_letter_code LMS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "Corina V3.40" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LMS N9 N9 N 0 1 Y N N 34.326 43.711 75.183 1.690 -0.166 0.095 N9 LMS 1 LMS C8 C8 C 0 1 Y N N 34.444 44.958 75.754 1.476 -1.398 -0.447 C8 LMS 2 LMS N7 N7 N 0 1 Y N N 34.326 44.953 77.063 2.609 -2.021 -0.598 N7 LMS 3 LMS C5 C5 C 0 1 Y N N 34.125 43.616 77.376 3.619 -1.230 -0.163 C5 LMS 4 LMS C6 C6 C 0 1 Y N N 33.907 42.946 78.601 5.015 -1.366 -0.083 C6 LMS 5 LMS N6 N6 N 0 1 N N N 33.835 43.556 79.788 5.640 -2.524 -0.510 N6 LMS 6 LMS N1 N1 N 0 1 Y N N 33.752 41.608 78.562 5.722 -0.356 0.414 N1 LMS 7 LMS C2 C2 C 0 1 Y N N 33.795 40.991 77.374 5.134 0.753 0.824 C2 LMS 8 LMS N3 N3 N 0 1 Y N N 33.977 41.506 76.160 3.830 0.925 0.768 N3 LMS 9 LMS C4 C4 C 0 1 Y N N 34.138 42.838 76.230 3.042 -0.030 0.286 C4 LMS 10 LMS N N N 0 1 N Y N 34.746 48.120 70.025 -4.233 -2.142 -0.948 N LMS 11 LMS S S S 0 1 N N N 35.161 48.006 71.607 -4.725 -0.988 0.133 S LMS 12 LMS HA HA H 0 1 N N N 33.523 42.522 70.101 -0.624 4.258 -0.465 HA LMS 13 LMS HB HB H 0 1 N N N 31.916 43.017 74.067 1.194 3.526 -1.470 HB LMS 14 LMS H8 H8 H 0 1 N N N 34.617 45.856 75.180 0.509 -1.799 -0.712 H8 LMS 15 LMS H2 H2 H 0 1 N N N 33.663 39.920 77.406 5.747 1.550 1.222 H2 LMS 16 LMS O1P O1P O 0 1 N N N 36.592 48.315 71.791 -5.422 -0.004 -0.620 O1P LMS 17 LMS O2P O2P O 0 1 N N N 34.161 48.717 72.436 -5.306 -1.685 1.227 O2P LMS 18 LMS "O5'" O5* O 0 1 N N N 34.973 46.471 71.984 -3.473 -0.311 0.671 "O5'" LMS 19 LMS "C5'" C5* C 0 1 N N N 35.786 45.455 71.376 -2.861 0.595 -0.249 "C5'" LMS 20 LMS "C4'" C4* C 0 1 N N R 35.278 44.080 71.751 -1.618 1.214 0.394 "C4'" LMS 21 LMS "O4'" O4* O 0 1 N N N 35.531 43.836 73.168 -0.619 0.201 0.598 "O4'" LMS 22 LMS "C3'" C3* C 0 1 N N S 33.781 43.829 71.536 -1.013 2.272 -0.548 "C3'" LMS 23 LMS "O3'" O3* O 0 1 N N N 33.570 42.507 71.050 -0.996 3.554 0.084 "O3'" LMS 24 LMS "C2'" C2* C 0 1 N N R 33.217 43.941 72.950 0.431 1.774 -0.800 "C2'" LMS 25 LMS "O2'" O2* O 0 1 N N N 32.038 43.186 73.140 1.357 2.862 -0.786 "O2'" LMS 26 LMS "C1'" C1* C 0 1 N N R 34.355 43.338 73.768 0.666 0.833 0.409 "C1'" LMS 27 LMS "H5'1" 1H5* H 0 0 N N N 35.748 45.568 70.283 -2.573 0.057 -1.153 "H5'1" LMS 28 LMS "H5'2" 2H5* H 0 0 N N N 36.821 45.564 71.733 -3.568 1.384 -0.506 "H5'2" LMS 29 LMS "H4'" H4* H 0 1 N N N 35.822 43.407 71.072 -1.883 1.671 1.347 "H4'" LMS 30 LMS "H3'" H3* H 0 1 N N N 33.323 44.519 70.812 -1.572 2.316 -1.483 "H3'" LMS 31 LMS "H2'" H2* H 0 1 N N N 32.929 44.970 73.212 0.495 1.224 -1.739 "H2'" LMS 32 LMS "H1'" H1* H 0 1 N N N 34.281 42.241 73.762 0.946 1.406 1.293 "H1'" LMS 33 LMS H6N1 1H6N H 0 0 N N N 33.817 42.870 80.515 5.114 -3.254 -0.871 H6N1 LMS 34 LMS H6N2 2H6N H 0 0 N N N 34.632 44.147 79.908 6.605 -2.606 -0.449 H6N2 LMS 35 LMS HN1 1HN H 0 1 N N N 33.750 48.143 69.942 -3.288 -2.270 -1.124 HN1 LMS 36 LMS HN2 2HN H 0 1 N N N 35.132 48.958 69.639 -4.890 -2.690 -1.406 HN2 LMS 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LMS "C1'" N9 SING N N 1 LMS N9 C8 SING Y N 2 LMS C8 N7 DOUB Y N 3 LMS N7 C5 SING Y N 4 LMS C5 C6 DOUB Y N 5 LMS C6 N6 SING N N 6 LMS C6 N1 SING Y N 7 LMS N1 C2 DOUB Y N 8 LMS C2 N3 SING Y N 9 LMS N9 C4 SING Y N 10 LMS C5 C4 SING Y N 11 LMS N3 C4 DOUB Y N 12 LMS "O5'" S SING N N 13 LMS O1P S DOUB N N 14 LMS O2P S DOUB N N 15 LMS N S SING N N 16 LMS "O3'" HA SING N N 17 LMS "O2'" HB SING N N 18 LMS C8 H8 SING N N 19 LMS C2 H2 SING N N 20 LMS "O5'" "C5'" SING N N 21 LMS "C5'" "C4'" SING N N 22 LMS "C4'" "O4'" SING N N 23 LMS "C4'" "C3'" SING N N 24 LMS "C3'" "O3'" SING N N 25 LMS "C3'" "C2'" SING N N 26 LMS "C2'" "O2'" SING N N 27 LMS "O4'" "C1'" SING N N 28 LMS "C2'" "C1'" SING N N 29 LMS "C5'" "H5'1" SING N N 30 LMS "C5'" "H5'2" SING N N 31 LMS "C4'" "H4'" SING N N 32 LMS "C3'" "H3'" SING N N 33 LMS "C2'" "H2'" SING N N 34 LMS "C1'" "H1'" SING N N 35 LMS N6 H6N1 SING N N 36 LMS N6 H6N2 SING N N 37 LMS N HN1 SING N N 38 LMS N HN2 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LMS SMILES ACDLabs 10.04 "O=S(=O)(OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)N" LMS SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[S](N)(=O)=O)[C@@H](O)[C@H]3O" LMS SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[S](N)(=O)=O)[CH](O)[CH]3O" LMS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COS(=O)(=O)N)O)O)N" LMS SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COS(=O)(=O)N)O)O)N" LMS InChI InChI 1.03 "InChI=1S/C10H14N6O6S/c11-8-5-9(14-2-13-8)16(3-15-5)10-7(18)6(17)4(22-10)1-21-23(12,19)20/h2-4,6-7,10,17-18H,1H2,(H2,11,13,14)(H2,12,19,20)/t4-,6-,7-,10-/m1/s1" LMS InChIKey InChI 1.03 GNZLUJQJDPRUTD-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LMS "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-sulfamoyladenosine" LMS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl sulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LMS "Create component" 2002-09-11 EBI LMS "Modify aromatic_flag" 2011-06-04 RCSB LMS "Modify descriptor" 2011-06-04 RCSB #