data_LMY # _chem_comp.id LMY _chem_comp.name "~{N}-[3-[[2-cyano-4-methyl-5-[[4-[[2-(methylamino)-6-[2,2,2-tris(fluoranyl)ethyl]thieno[2,3-d]pyrimidin-4-yl]amino]piperidin-1-yl]methyl]indol-1-yl]methyl]-1-bicyclo[1.1.1]pentanyl]methanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H35 F3 N8 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-04 _chem_comp.pdbx_modified_date 2020-01-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 636.734 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LMY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6O5I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LMY C10 C1 C 0 1 N N N 7.264 8.039 -13.414 -6.498 3.653 0.053 C10 LMY 1 LMY C20 C2 C 0 1 N N N 13.403 14.681 -12.020 -0.798 -3.433 -0.686 C20 LMY 2 LMY C22 C3 C 0 1 N N N 13.172 14.041 -9.731 0.400 -2.128 0.967 C22 LMY 3 LMY C24 C4 C 0 1 N N N 14.028 16.132 -10.237 1.584 -3.746 -0.391 C24 LMY 4 LMY C26 C5 C 0 1 Y N N 15.338 17.770 -11.743 3.285 -2.372 -1.570 C26 LMY 5 LMY C28 C6 C 0 1 Y N N 14.177 19.762 -12.681 5.313 -1.638 -0.453 C28 LMY 6 LMY C01 C7 C 0 1 Y N N 13.242 8.362 -11.727 -6.012 -2.469 1.173 C01 LMY 7 LMY C03 C8 C 0 1 Y N N 11.699 10.124 -11.916 -4.370 -0.918 0.693 C03 LMY 8 LMY C04 C9 C 0 1 Y N N 10.726 9.191 -12.325 -5.364 0.092 0.608 C04 LMY 9 LMY C05 C10 C 0 1 Y N N 11.028 7.829 -12.462 -6.692 -0.286 0.815 C05 LMY 10 LMY C07 C11 C 0 1 Y N N 9.263 9.423 -12.691 -5.241 1.510 0.321 C07 LMY 11 LMY C08 C12 C 0 1 Y N N 8.726 8.143 -13.051 -6.379 2.175 0.319 C08 LMY 12 LMY C11 C13 C 0 1 N N N 6.489 7.665 -12.141 -6.689 3.889 -1.447 C11 LMY 13 LMY C16 C14 C 0 1 N N N 15.463 8.902 -10.760 -7.747 -4.148 1.687 C16 LMY 14 LMY C18 C15 C 0 1 N N N 12.394 12.463 -11.513 -2.021 -1.660 0.577 C18 LMY 15 LMY C19 C16 C 0 1 N N N 12.377 13.627 -12.427 -1.904 -2.378 -0.770 C19 LMY 16 LMY C23 C17 C 0 1 N N N 12.148 12.939 -10.120 -0.669 -1.035 0.933 C23 LMY 17 LMY C25 C18 C 0 1 Y N N 14.095 17.391 -11.106 2.893 -3.000 -0.423 C25 LMY 18 LMY C27 C19 C 0 1 Y N N 15.345 19.042 -12.554 4.504 -1.683 -1.605 C27 LMY 19 LMY C29 C20 C 0 1 Y N N 12.847 19.387 -12.043 4.890 -2.282 0.706 C29 LMY 20 LMY C30 C21 C 0 1 Y N N 12.908 18.175 -11.226 3.690 -2.958 0.714 C30 LMY 21 LMY C31 C22 C 0 1 Y N N 16.371 19.652 -13.219 5.180 -0.953 -2.613 C31 LMY 22 LMY C32 C23 C 0 1 Y N N 15.767 20.781 -13.775 6.344 -0.494 -2.081 C32 LMY 23 LMY C34 C24 C 0 1 N N N 13.483 21.860 -13.866 7.543 -0.610 0.145 C34 LMY 24 LMY C35 C25 C 0 1 N N N 13.475 22.934 -12.830 7.259 0.698 0.886 C35 LMY 25 LMY C36 C26 C 0 1 N N N 13.122 22.765 -11.346 6.077 1.054 1.821 C36 LMY 26 LMY C37 C27 C 0 1 N N N 13.190 24.301 -11.714 6.882 2.377 1.829 C37 LMY 27 LMY C38 C28 C 0 1 N N N 12.391 24.047 -12.982 7.037 2.119 0.309 C38 LMY 28 LMY C39 C29 C 0 1 N N N 14.567 23.969 -12.458 8.120 1.424 1.943 C39 LMY 29 LMY C41 C30 C 0 1 N N N 14.003 25.974 -9.985 7.428 4.681 2.405 C41 LMY 30 LMY C43 C31 C 0 1 N N N 16.606 16.953 -11.613 2.412 -2.426 -2.797 C43 LMY 31 LMY C44 C32 C 0 1 N N N 16.411 21.826 -14.609 7.320 0.292 -2.774 C44 LMY 32 LMY F12 F1 F 0 1 N N N 6.596 8.525 -11.129 -5.588 3.377 -2.142 F12 LMY 33 LMY F13 F2 F 0 1 N N N 6.842 6.463 -11.655 -7.853 3.242 -1.876 F13 LMY 34 LMY F14 F3 F 0 1 N N N 5.170 7.574 -12.383 -6.800 5.261 -1.693 F14 LMY 35 LMY N02 N1 N 0 1 Y N N 12.923 9.707 -11.573 -4.737 -2.159 0.973 N02 LMY 36 LMY N06 N2 N 0 1 Y N N 12.357 7.420 -12.167 -6.971 -1.566 1.099 N06 LMY 37 LMY N15 N3 N 0 1 N N N 14.525 7.959 -11.389 -6.346 -3.781 1.463 N15 LMY 38 LMY N17 N4 N 0 1 N N N 11.382 11.465 -11.834 -3.038 -0.610 0.487 N17 LMY 39 LMY N21 N5 N 0 1 N N N 13.135 15.177 -10.663 0.474 -2.785 -0.344 N21 LMY 40 LMY N33 N6 N 0 1 Y N N 14.440 20.833 -13.477 6.435 -0.905 -0.766 N33 LMY 41 LMY N40 N7 N 0 1 N N N 12.961 25.406 -10.784 6.592 3.632 2.528 N40 LMY 42 LMY N45 N8 N 0 1 N N N 16.852 22.618 -15.245 8.094 0.916 -3.324 N45 LMY 43 LMY O42 O1 O 0 1 N N N 15.103 25.554 -10.066 8.421 4.587 1.715 O42 LMY 44 LMY S09 S1 S 0 1 Y N N 9.813 6.895 -12.981 -7.737 1.119 0.662 S09 LMY 45 LMY H1 H1 H 0 1 N N N 6.905 9.004 -13.801 -7.356 4.051 0.595 H1 LMY 46 LMY H2 H2 H 0 1 N N N 7.123 7.262 -14.180 -5.592 4.157 0.388 H2 LMY 47 LMY H3 H3 H 0 1 N N N 14.408 14.235 -12.049 -1.051 -4.164 0.083 H3 LMY 48 LMY H4 H4 H 0 1 N N N 13.355 15.522 -12.727 -0.703 -3.936 -1.648 H4 LMY 49 LMY H5 H5 H 0 1 N N N 14.183 13.607 -9.740 1.367 -1.684 1.206 H5 LMY 50 LMY H6 H6 H 0 1 N N N 12.937 14.403 -8.719 0.142 -2.865 1.728 H6 LMY 51 LMY H7 H7 H 0 1 N N N 15.030 15.678 -10.217 1.494 -4.362 -1.285 H7 LMY 52 LMY H8 H8 H 0 1 N N N 13.743 16.435 -9.219 1.551 -4.382 0.494 H8 LMY 53 LMY H9 H9 H 0 1 N N N 8.736 10.366 -12.681 -4.290 1.984 0.126 H9 LMY 54 LMY H10 H10 H 0 1 N N N 16.421 8.396 -10.571 -7.814 -5.215 1.901 H10 LMY 55 LMY H11 H11 H 0 1 N N N 15.627 9.758 -11.431 -8.139 -3.583 2.533 H11 LMY 56 LMY H12 H12 H 0 1 N N N 15.042 9.257 -9.808 -8.330 -3.918 0.795 H12 LMY 57 LMY H13 H13 H 0 1 N N N 13.388 11.994 -11.554 -2.305 -2.376 1.349 H13 LMY 58 LMY H14 H14 H 0 1 N N N 11.375 14.080 -12.409 -1.658 -1.655 -1.548 H14 LMY 59 LMY H15 H15 H 0 1 N N N 12.605 13.283 -13.447 -2.851 -2.862 -1.008 H15 LMY 60 LMY H16 H16 H 0 1 N N N 11.130 13.351 -10.053 -0.734 -0.558 1.911 H16 LMY 61 LMY H17 H17 H 0 1 N N N 12.247 12.092 -9.425 -0.404 -0.290 0.182 H17 LMY 62 LMY H18 H18 H 0 1 N N N 11.943 19.962 -12.181 5.502 -2.255 1.596 H18 LMY 63 LMY H19 H19 H 0 1 N N N 12.022 17.862 -10.694 3.363 -3.456 1.615 H19 LMY 64 LMY H20 H20 H 0 1 N N N 17.401 19.337 -13.296 4.834 -0.790 -3.622 H20 LMY 65 LMY H21 H21 H 0 1 N N N 13.774 22.287 -14.837 8.467 -0.511 -0.425 H21 LMY 66 LMY H22 H22 H 0 1 N N N 12.479 21.417 -13.946 7.646 -1.421 0.867 H22 LMY 67 LMY H23 H23 H 0 1 N N N 12.143 22.334 -11.090 5.104 1.110 1.333 H23 LMY 68 LMY H24 H24 H 0 1 N N N 13.890 22.357 -10.672 6.063 0.517 2.770 H24 LMY 69 LMY H25 H25 H 0 1 N N N 12.496 24.762 -13.812 7.916 2.572 -0.148 H25 LMY 70 LMY H26 H26 H 0 1 N N N 11.335 23.758 -12.879 6.124 2.241 -0.273 H26 LMY 71 LMY H27 H27 H 0 1 N N N 15.421 23.633 -11.852 8.207 0.906 2.898 H27 LMY 72 LMY H28 H28 H 0 1 N N N 14.920 24.660 -13.238 9.063 1.824 1.571 H28 LMY 73 LMY H29 H29 H 0 1 N N N 13.783 26.786 -9.308 7.214 5.606 2.920 H29 LMY 74 LMY H30 H30 H 0 1 N N N 17.176 17.297 -10.737 1.659 -1.640 -2.741 H30 LMY 75 LMY H31 H31 H 0 1 N N N 16.347 15.891 -11.488 3.025 -2.279 -3.686 H31 LMY 76 LMY H32 H32 H 0 1 N N N 17.217 17.077 -12.519 1.920 -3.397 -2.851 H32 LMY 77 LMY H33 H33 H 0 1 N N N 14.427 7.189 -10.758 -5.654 -4.458 1.517 H33 LMY 78 LMY H34 H34 H 0 1 N N N 11.004 11.721 -12.723 -2.777 0.302 0.283 H34 LMY 79 LMY H36 H36 H 0 1 N N N 12.037 25.780 -10.703 5.798 3.707 3.080 H36 LMY 80 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LMY N45 C44 TRIP N N 1 LMY C44 C32 SING N N 2 LMY C34 N33 SING N N 3 LMY C34 C35 SING N N 4 LMY C32 N33 SING Y N 5 LMY C32 C31 DOUB Y N 6 LMY N33 C28 SING Y N 7 LMY C10 C08 SING N N 8 LMY C10 C11 SING N N 9 LMY C31 C27 SING Y N 10 LMY C08 S09 SING Y N 11 LMY C08 C07 DOUB Y N 12 LMY C38 C35 SING N N 13 LMY C38 C37 SING N N 14 LMY S09 C05 SING Y N 15 LMY C35 C39 SING N N 16 LMY C35 C36 SING N N 17 LMY C07 C04 SING Y N 18 LMY C28 C27 DOUB Y N 19 LMY C28 C29 SING Y N 20 LMY C27 C26 SING Y N 21 LMY C05 C04 DOUB Y N 22 LMY C05 N06 SING Y N 23 LMY C39 C37 SING N N 24 LMY C19 C20 SING N N 25 LMY C19 C18 SING N N 26 LMY F14 C11 SING N N 27 LMY C04 C03 SING Y N 28 LMY N06 C01 DOUB Y N 29 LMY C11 F13 SING N N 30 LMY C11 F12 SING N N 31 LMY C29 C30 DOUB Y N 32 LMY C20 N21 SING N N 33 LMY C03 N17 SING N N 34 LMY C03 N02 DOUB Y N 35 LMY N17 C18 SING N N 36 LMY C26 C43 SING N N 37 LMY C26 C25 DOUB Y N 38 LMY C01 N02 SING Y N 39 LMY C01 N15 SING N N 40 LMY C37 C36 SING N N 41 LMY C37 N40 SING N N 42 LMY C18 C23 SING N N 43 LMY N15 C16 SING N N 44 LMY C30 C25 SING Y N 45 LMY C25 C24 SING N N 46 LMY N40 C41 SING N N 47 LMY N21 C24 SING N N 48 LMY N21 C22 SING N N 49 LMY C23 C22 SING N N 50 LMY O42 C41 DOUB N N 51 LMY C10 H1 SING N N 52 LMY C10 H2 SING N N 53 LMY C20 H3 SING N N 54 LMY C20 H4 SING N N 55 LMY C22 H5 SING N N 56 LMY C22 H6 SING N N 57 LMY C24 H7 SING N N 58 LMY C24 H8 SING N N 59 LMY C07 H9 SING N N 60 LMY C16 H10 SING N N 61 LMY C16 H11 SING N N 62 LMY C16 H12 SING N N 63 LMY C18 H13 SING N N 64 LMY C19 H14 SING N N 65 LMY C19 H15 SING N N 66 LMY C23 H16 SING N N 67 LMY C23 H17 SING N N 68 LMY C29 H18 SING N N 69 LMY C30 H19 SING N N 70 LMY C31 H20 SING N N 71 LMY C34 H21 SING N N 72 LMY C34 H22 SING N N 73 LMY C36 H23 SING N N 74 LMY C36 H24 SING N N 75 LMY C38 H25 SING N N 76 LMY C38 H26 SING N N 77 LMY C39 H27 SING N N 78 LMY C39 H28 SING N N 79 LMY C41 H29 SING N N 80 LMY C43 H30 SING N N 81 LMY C43 H31 SING N N 82 LMY C43 H32 SING N N 83 LMY N15 H33 SING N N 84 LMY N17 H34 SING N N 85 LMY N40 H36 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LMY InChI InChI 1.03 "InChI=1S/C32H35F3N8OS/c1-19-20(3-4-26-24(19)9-22(12-36)43(26)17-30-14-31(15-30,16-30)38-18-44)13-42-7-5-21(6-8-42)39-27-25-10-23(11-32(33,34)35)45-28(25)41-29(37-2)40-27/h3-4,9-10,18,21H,5-8,11,13-17H2,1-2H3,(H,38,44)(H2,37,39,40,41)/t30-,31+" LMY InChIKey InChI 1.03 MBFYNGBMAACLAT-QRRGNZNSSA-N LMY SMILES_CANONICAL CACTVS 3.385 "CNc1nc(NC2CCN(CC2)Cc3ccc4n(CC56CC(C5)(C6)NC=O)c(cc4c3C)C#N)c7cc(CC(F)(F)F)sc7n1" LMY SMILES CACTVS 3.385 "CNc1nc(NC2CCN(CC2)Cc3ccc4n(CC56CC(C5)(C6)NC=O)c(cc4c3C)C#N)c7cc(CC(F)(F)F)sc7n1" LMY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1cc(n2CC34CC(C3)(C4)NC=O)C#N)CN5CCC(CC5)Nc6c7cc(sc7nc(n6)NC)CC(F)(F)F" LMY SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1cc(n2CC34CC(C3)(C4)NC=O)C#N)CN5CCC(CC5)Nc6c7cc(sc7nc(n6)NC)CC(F)(F)F" # _pdbx_chem_comp_identifier.comp_id LMY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[[2-cyano-4-methyl-5-[[4-[[2-(methylamino)-6-[2,2,2-tris(fluoranyl)ethyl]thieno[2,3-d]pyrimidin-4-yl]amino]piperidin-1-yl]methyl]indol-1-yl]methyl]-1-bicyclo[1.1.1]pentanyl]methanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LMY "Create component" 2019-03-04 RCSB LMY "Initial release" 2020-01-08 RCSB ##