data_LMZ # _chem_comp.id LMZ _chem_comp.name "5-NITROSO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-30 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.230 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LMZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1C41 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LMZ N1 N1 N 0 1 Y N N 60.363 79.779 6.125 1.368 0.199 -1.990 N1 LMZ 1 LMZ C2 C2 C 0 1 Y N N 60.871 78.960 5.124 1.892 0.257 -3.223 C2 LMZ 2 LMZ N3 N3 N 0 1 Y N N 62.213 78.734 5.156 1.149 0.146 -4.335 N3 LMZ 3 LMZ C4 C4 C 0 1 Y N N 63.084 79.245 6.088 -0.185 -0.037 -4.264 C4 LMZ 4 LMZ C5 C5 C 0 1 Y N N 62.502 80.132 7.168 -0.814 -0.114 -2.928 C5 LMZ 5 LMZ C6 C6 C 0 1 Y N N 61.105 80.417 7.108 0.035 0.011 -1.791 C6 LMZ 6 LMZ N7 N7 N 0 1 N N N 60.426 81.282 7.929 -0.471 -0.049 -0.543 N7 LMZ 7 LMZ C8 C8 C 0 1 N N N 59.755 80.560 9.056 0.426 -0.031 0.613 C8 LMZ 8 LMZ C9 C9 C 0 1 N N S 58.178 80.541 8.956 -0.398 -0.110 1.900 C9 LMZ 9 LMZ O9 O9 O 0 1 N N N 57.856 79.890 7.760 -1.285 1.007 1.967 O9 LMZ 10 LMZ C10 C10 C 0 1 N N S 57.210 81.793 9.114 0.539 -0.090 3.109 C10 LMZ 11 LMZ O10 O10 O 0 1 N N N 57.343 82.687 8.027 1.426 -1.208 3.042 O10 LMZ 12 LMZ C11 C11 C 0 1 N N R 56.968 82.603 10.535 -0.285 -0.170 4.395 C11 LMZ 13 LMZ O11 O11 O 0 1 N N N 57.839 81.782 11.337 -1.172 0.948 4.462 O11 LMZ 14 LMZ C12 C12 C 0 1 N N N 55.668 82.576 11.443 0.652 -0.150 5.604 C12 LMZ 15 LMZ O12 O12 O 0 1 N N N 54.635 82.176 10.565 -0.117 -0.224 6.805 O12 LMZ 16 LMZ N5 N5 N 0 1 N N N 63.429 80.688 8.122 -2.114 -0.293 -2.793 N5 LMZ 17 LMZ O52 O52 O 0 1 N N N 63.009 81.413 9.031 -2.806 -0.493 -3.775 O52 LMZ 18 LMZ O4 O4 O 0 1 N N N 64.395 78.868 5.908 -0.854 -0.137 -5.274 O4 LMZ 19 LMZ O2 O2 O 0 1 N N N 59.961 78.453 4.203 3.090 0.422 -3.338 O2 LMZ 20 LMZ HN1 HN1 H 0 1 N N N 59.650 79.233 6.609 1.954 0.286 -1.221 HN1 LMZ 21 LMZ HN3 HN3 H 0 1 N N N 62.595 78.135 4.424 1.578 0.199 -5.204 HN3 LMZ 22 LMZ HN7 HN7 H 0 1 N N N 59.762 81.851 7.403 -1.431 -0.106 -0.412 HN7 LMZ 23 LMZ H81 1H8 H 0 1 N N N 60.154 79.523 9.150 1.004 0.892 0.609 H81 LMZ 24 LMZ H82 2H8 H 0 1 N N N 60.080 80.976 10.037 1.102 -0.883 0.562 H82 LMZ 25 LMZ H9 H9 H 0 1 N N N 57.951 80.066 9.939 -0.977 -1.034 1.904 H9 LMZ 26 LMZ HO9 HO9 H 0 1 N N N 56.908 79.878 7.699 -0.734 1.802 1.961 HO9 LMZ 27 LMZ H10 H10 H 0 1 N N N 56.254 81.217 9.129 1.117 0.833 3.104 H10 LMZ 28 LMZ HO10 HO10 H 0 0 N N N 56.764 83.434 8.121 0.875 -2.003 3.047 HO10 LMZ 29 LMZ H11 H11 H 0 1 N N N 57.037 83.682 10.264 -0.864 -1.094 4.399 H11 LMZ 30 LMZ HO11 HO11 H 0 0 N N N 57.700 82.247 12.153 -0.621 1.742 4.456 HO11 LMZ 31 LMZ H121 1H12 H 0 0 N N N 55.762 81.941 12.355 1.230 0.773 5.600 H121 LMZ 32 LMZ H122 2H12 H 0 0 N N N 55.466 83.532 11.978 1.328 -1.003 5.553 H122 LMZ 33 LMZ HO12 HO12 H 0 0 N N N 53.856 82.159 11.108 0.509 -0.209 7.541 HO12 LMZ 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LMZ N1 C2 SING Y N 1 LMZ N1 C6 SING Y N 2 LMZ N1 HN1 SING N N 3 LMZ C2 N3 SING Y N 4 LMZ C2 O2 DOUB N N 5 LMZ N3 C4 SING Y N 6 LMZ N3 HN3 SING N N 7 LMZ C4 C5 SING Y N 8 LMZ C4 O4 DOUB N N 9 LMZ C5 C6 DOUB Y N 10 LMZ C5 N5 SING N N 11 LMZ C6 N7 SING N N 12 LMZ N7 C8 SING N N 13 LMZ N7 HN7 SING N N 14 LMZ C8 C9 SING N N 15 LMZ C8 H81 SING N N 16 LMZ C8 H82 SING N N 17 LMZ C9 O9 SING N N 18 LMZ C9 C10 SING N N 19 LMZ C9 H9 SING N N 20 LMZ O9 HO9 SING N N 21 LMZ C10 O10 SING N N 22 LMZ C10 C11 SING N N 23 LMZ C10 H10 SING N N 24 LMZ O10 HO10 SING N N 25 LMZ C11 O11 SING N N 26 LMZ C11 C12 SING N N 27 LMZ C11 H11 SING N N 28 LMZ O11 HO11 SING N N 29 LMZ C12 O12 SING N N 30 LMZ C12 H121 SING N N 31 LMZ C12 H122 SING N N 32 LMZ O12 HO12 SING N N 33 LMZ N5 O52 DOUB N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LMZ SMILES ACDLabs 10.04 "O=C1NC(NCC(O)C(O)C(O)CO)=C(N=O)C(=O)N1" LMZ SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O)[C@@H](O)[C@@H](O)CNC1=C(N=O)C(=O)NC(=O)N1" LMZ SMILES CACTVS 3.341 "OC[CH](O)[CH](O)[CH](O)CNC1=C(N=O)C(=O)NC(=O)N1" LMZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]([C@@H]([C@@H](CO)O)O)O)NC1=C(C(=O)NC(=O)N1)N=O" LMZ SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(CO)O)O)O)NC1=C(C(=O)NC(=O)N1)N=O" LMZ InChI InChI 1.03 "InChI=1S/C9H14N4O7/c14-2-4(16)6(17)3(15)1-10-7-5(13-20)8(18)12-9(19)11-7/h3-4,6,14-17H,1-2H2,(H3,10,11,12,18,19)/t3-,4+,6-/m0/s1" LMZ InChIKey InChI 1.03 YMWIHKCBRFEJMH-RPDRRWSUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LMZ "SYSTEMATIC NAME" ACDLabs 10.04 "1-deoxy-1-[(5-nitroso-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)amino]-D-ribitol" LMZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-nitroso-6-[[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]amino]-1H-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LMZ "Create component" 1999-07-30 EBI LMZ "Modify descriptor" 2011-06-04 RCSB #