data_LN1 # _chem_comp.id LN1 _chem_comp.name "(3R)-4-{[(3,4-dihydroxyphenyl)acetyl]oxy}-N-(2-formylindolizin-3-yl)-3-sulfino-D-valine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 N2 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-05-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 490.483 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LN1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3D4F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LN1 O8 O8 O 0 1 N N N 34.424 59.926 3.891 -7.095 2.199 -0.083 O8 LN1 1 LN1 C7 C7 C 0 1 N N N 34.188 60.908 4.601 -5.929 1.915 -0.265 C7 LN1 2 LN1 C6 C6 C 0 1 Y N N 34.424 62.376 4.247 -5.471 0.601 -0.003 C6 LN1 3 LN1 C9 C9 C 0 1 Y N N 34.004 63.377 5.024 -6.252 -0.486 0.472 C9 LN1 4 LN1 CG CG C 0 1 Y N N 34.173 64.529 4.375 -5.421 -1.564 0.584 CG LN1 5 LN1 CD1 CD1 C 0 1 Y N N 33.908 65.850 4.730 -5.656 -2.896 1.005 CD1 LN1 6 LN1 CE1 CE1 C 0 1 Y N N 34.182 66.867 3.816 -4.628 -3.780 1.019 CE1 LN1 7 LN1 CZ CZ C 0 1 Y N N 34.706 66.549 2.566 -3.340 -3.367 0.616 CZ LN1 8 LN1 CE2 CE2 C 0 1 Y N N 34.971 65.231 2.204 -3.119 -2.103 0.217 CE2 LN1 9 LN1 ND2 ND2 N 0 1 Y N N 34.712 64.204 3.124 -4.146 -1.183 0.193 ND2 LN1 10 LN1 C5 C5 C 0 1 Y N N 34.908 62.822 3.018 -4.169 0.126 -0.169 C5 LN1 11 LN1 N4 N4 N 0 1 N N N 35.309 61.967 2.075 -3.090 0.862 -0.621 N4 LN1 12 LN1 C3 C3 C 0 1 N N S 36.656 62.102 1.505 -1.839 0.104 -0.478 C3 LN1 13 LN1 C3A C3A C 0 1 N N N 37.718 61.814 2.569 -1.667 -0.810 -1.664 C3A LN1 14 LN1 O3A O3A O 0 1 N N N 37.507 60.879 3.366 -0.588 -1.604 -1.748 O3A LN1 15 LN1 O3B O3B O 0 1 N N N 38.743 62.529 2.551 -2.500 -0.828 -2.539 O3B LN1 16 LN1 C2 C2 C 0 1 N N R 36.801 61.175 0.295 -0.660 1.076 -0.407 C2 LN1 17 LN1 S1 S1 S 0 1 N N S 35.366 61.426 -0.812 -0.790 2.076 1.100 S1 LN1 18 LN1 O12 O12 O 0 1 N N N 35.636 60.811 -2.080 -0.756 1.033 2.208 O12 LN1 19 LN1 O13 O13 O 0 1 N N N 35.304 62.914 -0.998 -2.103 2.609 1.203 O13 LN1 20 LN1 CG2 CG2 C 0 1 N N N 36.841 59.700 0.708 -0.680 1.993 -1.632 CG2 LN1 21 LN1 CG1 CG1 C 0 1 N N N 38.067 61.561 -0.452 0.651 0.286 -0.383 CG1 LN1 22 LN1 OAV OAV O 0 1 N N N 39.197 61.351 0.406 1.770 1.208 -0.316 OAV LN1 23 LN1 CAX CAX C 0 1 N N N 40.332 61.536 -0.315 3.000 0.672 -0.287 CAX LN1 24 LN1 OAD OAD O 0 1 N N N 40.507 62.582 -0.939 3.137 -0.528 -0.318 OAD LN1 25 LN1 CAS CAS C 0 1 N N N 41.386 60.428 -0.317 4.211 1.567 -0.218 CAS LN1 26 LN1 CAY CAY C 0 1 Y N N 42.652 60.991 -0.958 5.459 0.722 -0.198 CAY LN1 27 LN1 CAQ CAQ C 0 1 Y N N 42.696 61.185 -2.333 5.984 0.296 1.008 CAQ LN1 28 LN1 CAM CAM C 0 1 Y N N 43.732 61.356 -0.163 6.074 0.371 -1.385 CAM LN1 29 LN1 CAN CAN C 0 1 Y N N 44.861 61.920 -0.746 7.218 -0.404 -1.372 CAN LN1 30 LN1 CAZ CAZ C 0 1 Y N N 44.909 62.117 -2.122 7.753 -0.829 -0.167 CAZ LN1 31 LN1 OAH OAH O 0 1 N N N 46.046 62.620 -2.675 8.880 -1.591 -0.152 OAH LN1 32 LN1 CBA CBA C 0 1 Y N N 43.825 61.749 -2.916 7.132 -0.480 1.028 CBA LN1 33 LN1 OAI OAI O 0 1 N N N 43.850 61.909 -4.267 7.650 -0.900 2.214 OAI LN1 34 LN1 H7 H7 H 0 1 N N N 33.770 60.708 5.577 -5.241 2.663 -0.631 H7 LN1 35 LN1 H9 H9 H 0 1 N N N 33.594 63.271 6.017 -7.306 -0.464 0.703 H9 LN1 36 LN1 HD1 HD1 H 0 1 N N N 33.496 66.083 5.701 -6.644 -3.204 1.312 HD1 LN1 37 LN1 HE1 HE1 H 0 1 N N N 33.988 67.897 4.077 -4.794 -4.798 1.338 HE1 LN1 38 LN1 HZ HZ H 0 1 N N N 34.911 67.342 1.862 -2.524 -4.074 0.629 HZ LN1 39 LN1 HE2 HE2 H 0 1 N N N 35.371 65.002 1.227 -2.127 -1.805 -0.087 HE2 LN1 40 LN1 HN4 HN4 H 0 1 N N N 35.269 61.056 2.486 -3.227 1.156 -1.577 HN4 LN1 41 LN1 H3 H3 H 0 1 N N N 36.806 63.137 1.163 -1.877 -0.489 0.436 H3 LN1 42 LN1 HO3A HO3A H 0 0 N N N 38.245 60.794 3.958 -0.521 -2.172 -2.527 HO3A LN1 43 LN1 HO12 HO12 H 0 0 N N N 35.696 61.481 -2.751 -0.817 1.404 3.099 HO12 LN1 44 LN1 HG2 HG2 H 0 1 N N N 36.851 59.067 -0.192 -1.613 2.556 -1.649 HG2 LN1 45 LN1 HG2A HG2A H 0 0 N N N 37.748 59.510 1.300 0.161 2.685 -1.581 HG2A LN1 46 LN1 HG2B HG2B H 0 0 N N N 35.953 59.465 1.312 -0.602 1.392 -2.537 HG2B LN1 47 LN1 HG1 HG1 H 0 1 N N N 38.168 60.940 -1.354 0.665 -0.367 0.489 HG1 LN1 48 LN1 HG1A HG1A H 0 0 N N N 38.016 62.619 -0.747 0.729 -0.315 -1.289 HG1A LN1 49 LN1 HAS HAS H 0 1 N N N 41.596 60.106 0.713 4.229 2.222 -1.089 HAS LN1 50 LN1 HASA HASA H 0 0 N N N 41.025 59.556 -0.882 4.166 2.170 0.689 HASA LN1 51 LN1 HAQ HAQ H 0 1 N N N 41.855 60.898 -2.947 5.500 0.569 1.934 HAQ LN1 52 LN1 HAM HAM H 0 1 N N N 43.694 61.202 0.905 5.658 0.702 -2.326 HAM LN1 53 LN1 HAN HAN H 0 1 N N N 45.701 62.205 -0.130 7.696 -0.677 -2.302 HAN LN1 54 LN1 HOAH HOAH H 0 0 N N N 45.919 62.737 -3.609 9.699 -1.080 -0.109 HOAH LN1 55 LN1 HOAI HOAI H 0 0 N N N 43.856 62.836 -4.477 7.306 -1.752 2.513 HOAI LN1 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LN1 O8 C7 DOUB N N 1 LN1 C7 H7 SING N N 2 LN1 C6 C7 SING N N 3 LN1 C6 C9 SING Y N 4 LN1 C9 H9 SING N N 5 LN1 CG C9 DOUB Y N 6 LN1 CG CD1 SING Y N 7 LN1 CD1 HD1 SING N N 8 LN1 CE1 CD1 DOUB Y N 9 LN1 CE1 HE1 SING N N 10 LN1 CZ CE1 SING Y N 11 LN1 CZ HZ SING N N 12 LN1 CE2 CZ DOUB Y N 13 LN1 CE2 ND2 SING Y N 14 LN1 CE2 HE2 SING N N 15 LN1 ND2 CG SING Y N 16 LN1 C5 C6 DOUB Y N 17 LN1 C5 ND2 SING Y N 18 LN1 N4 C5 SING N N 19 LN1 N4 HN4 SING N N 20 LN1 C3 N4 SING N N 21 LN1 C3 C3A SING N N 22 LN1 C3 H3 SING N N 23 LN1 C3A O3A SING N N 24 LN1 O3A HO3A SING N N 25 LN1 O3B C3A DOUB N N 26 LN1 C2 C3 SING N N 27 LN1 C2 CG2 SING N N 28 LN1 S1 C2 SING N N 29 LN1 O12 S1 SING N N 30 LN1 O12 HO12 SING N N 31 LN1 O13 S1 DOUB N N 32 LN1 CG2 HG2 SING N N 33 LN1 CG2 HG2A SING N N 34 LN1 CG2 HG2B SING N N 35 LN1 CG1 C2 SING N N 36 LN1 CG1 OAV SING N N 37 LN1 CG1 HG1 SING N N 38 LN1 CG1 HG1A SING N N 39 LN1 CAX OAV SING N N 40 LN1 OAD CAX DOUB N N 41 LN1 CAS CAX SING N N 42 LN1 CAS HAS SING N N 43 LN1 CAS HASA SING N N 44 LN1 CAY CAS SING N N 45 LN1 CAY CAM SING Y N 46 LN1 CAQ CAY DOUB Y N 47 LN1 CAQ HAQ SING N N 48 LN1 CAM HAM SING N N 49 LN1 CAN CAM DOUB Y N 50 LN1 CAN HAN SING N N 51 LN1 CAZ CAN SING Y N 52 LN1 OAH CAZ SING N N 53 LN1 OAH HOAH SING N N 54 LN1 CBA CAQ SING Y N 55 LN1 CBA CAZ DOUB Y N 56 LN1 OAI CBA SING N N 57 LN1 OAI HOAI SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LN1 SMILES ACDLabs 10.04 "O=C(OCC(S(=O)O)(C)C(C(=O)O)Nc2c(cc1ccccn12)C=O)Cc3ccc(O)c(O)c3" LN1 SMILES_CANONICAL CACTVS 3.341 "C[C@](COC(=O)Cc1ccc(O)c(O)c1)([C@@H](Nc2n3ccccc3cc2C=O)C(O)=O)[S@](O)=O" LN1 SMILES CACTVS 3.341 "C[C](COC(=O)Cc1ccc(O)c(O)c1)([CH](Nc2n3ccccc3cc2C=O)C(O)=O)[S](O)=O" LN1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@](COC(=O)Cc1ccc(c(c1)O)O)([C@H](C(=O)O)Nc2c(cc3n2cccc3)C=O)[S@@](=O)O" LN1 SMILES "OpenEye OEToolkits" 1.5.0 "CC(COC(=O)Cc1ccc(c(c1)O)O)(C(C(=O)O)Nc2c(cc3n2cccc3)C=O)S(=O)O" LN1 InChI InChI 1.03 "InChI=1S/C22H22N2O9S/c1-22(34(31)32,12-33-18(28)9-13-5-6-16(26)17(27)8-13)19(21(29)30)23-20-14(11-25)10-15-4-2-3-7-24(15)20/h2-8,10-11,19,23,26-27H,9,12H2,1H3,(H,29,30)(H,31,32)/t19-,22-/m0/s1" LN1 InChIKey InChI 1.03 DEOZLEGRVHDNKC-UGKGYDQZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LN1 "SYSTEMATIC NAME" ACDLabs 10.04 "(3R)-4-{[(3,4-dihydroxyphenyl)acetyl]oxy}-N-(2-formylindolizin-3-yl)-3-sulfino-D-valine" LN1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R)-4-[2-(3,4-dihydroxyphenyl)ethanoyloxy]-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LN1 "Create component" 2008-05-15 RCSB LN1 "Modify descriptor" 2011-06-04 RCSB #