data_LN2 # _chem_comp.id LN2 _chem_comp.name "(2~{S})-2-[[(2~{S})-3-[4-(5-ethanoyl-2-fluoranyl-phenyl)phenyl]-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)propanoyl]amino]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H25 F N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-07 _chem_comp.pdbx_modified_date 2023-04-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.507 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LN2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AAO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LN2 O1 O1 O 0 1 N N N -1.564 1.475 9.023 -4.403 0.965 -0.232 O1 LN2 1 LN2 O2 O2 O 0 1 N N N -1.168 1.867 12.776 -7.834 -2.745 0.098 O2 LN2 2 LN2 O3 O3 O 0 1 N N N 0.176 3.527 12.145 -5.739 -3.436 0.218 O3 LN2 3 LN2 O4 O4 O 0 1 N N N 1.927 3.301 5.866 -2.635 1.715 1.765 O4 LN2 4 LN2 C1 C1 C 0 1 N N N -3.405 8.350 14.637 6.902 0.604 -0.676 C1 LN2 5 LN2 C2 C2 C 0 1 Y N N -3.885 8.393 13.226 6.081 -0.558 -0.306 C2 LN2 6 LN2 O O5 O 0 1 N N N -2.639 7.472 14.997 6.376 1.677 -0.882 O LN2 7 LN2 C24 C3 C 0 1 N N N 1.245 2.298 5.786 -1.990 2.023 0.783 C24 LN2 8 LN2 C23 C4 C 0 1 Y N N 1.369 1.169 4.836 -1.302 3.315 0.596 C23 LN2 9 LN2 C22 C5 C 0 1 Y N N 2.280 0.945 3.806 -1.197 4.450 1.402 C22 LN2 10 LN2 C21 C6 C 0 1 Y N N 2.112 -0.159 2.982 -0.473 5.539 0.964 C21 LN2 11 LN2 C20 C7 C 0 1 Y N N 1.061 -1.033 3.189 0.149 5.513 -0.272 C20 LN2 12 LN2 C19 C8 C 0 1 Y N N 0.167 -0.814 4.223 0.049 4.391 -1.078 C19 LN2 13 LN2 C18 C9 C 0 1 Y N N 0.320 0.292 5.048 -0.670 3.299 -0.650 C18 LN2 14 LN2 C17 C10 C 0 1 N N N -0.513 0.776 6.198 -0.970 1.954 -1.263 C17 LN2 15 LN2 N1 N1 N 0 1 N N N 0.152 2.034 6.552 -1.795 1.233 -0.287 N1 LN2 16 LN2 C12 C11 C 0 1 N N S -0.314 2.941 7.591 -2.321 -0.124 -0.452 C12 LN2 17 LN2 C13 C12 C 0 1 N N N -0.528 2.110 8.853 -3.827 -0.090 -0.395 C13 LN2 18 LN2 N N2 N 0 1 N N N 0.472 2.128 9.736 -4.533 -1.230 -0.524 N LN2 19 LN2 C14 C13 C 0 1 N N S 0.373 1.440 11.012 -5.996 -1.197 -0.468 C14 LN2 20 LN2 C16 C14 C 0 1 N N N -0.297 2.311 12.059 -6.513 -2.541 -0.026 C16 LN2 21 LN2 C15 C15 C 0 1 N N N 1.749 1.036 11.509 -6.552 -0.868 -1.855 C15 LN2 22 LN2 C11 C16 C 0 1 N N N -1.590 3.702 7.175 -1.788 -1.018 0.669 C11 LN2 23 LN2 C10 C17 C 0 1 Y N N -2.133 4.677 8.195 -0.293 -1.152 0.537 C10 LN2 24 LN2 C9 C18 C 0 1 Y N N -1.286 5.495 8.929 0.243 -2.174 -0.226 C9 LN2 25 LN2 C8 C19 C 0 1 Y N N -1.787 6.447 9.800 1.611 -2.300 -0.350 C8 LN2 26 LN2 C25 C20 C 0 1 Y N N -3.499 4.824 8.380 0.538 -0.249 1.175 C25 LN2 27 LN2 C26 C21 C 0 1 Y N N -4.004 5.772 9.252 1.908 -0.366 1.058 C26 LN2 28 LN2 C7 C22 C 0 1 Y N N -3.158 6.608 9.977 2.454 -1.397 0.295 C7 LN2 29 LN2 C6 C23 C 0 1 Y N N -3.702 7.607 10.938 3.926 -1.529 0.166 C6 LN2 30 LN2 C5 C24 C 0 1 Y N N -4.701 8.512 10.601 4.541 -2.763 0.395 C5 LN2 31 LN2 F F1 F 0 1 N N N -5.096 8.598 9.310 3.794 -3.835 0.735 F LN2 32 LN2 C4 C25 C 0 1 Y N N -5.310 9.330 11.521 5.916 -2.887 0.280 C4 LN2 33 LN2 C3 C26 C 0 1 Y N N -4.904 9.262 12.841 6.686 -1.798 -0.067 C3 LN2 34 LN2 C27 C27 C 0 1 Y N N -3.287 7.572 12.270 4.695 -0.426 -0.184 C27 LN2 35 LN2 C C28 C 0 1 N N N -3.854 9.406 15.599 8.397 0.461 -0.800 C LN2 36 LN2 H1 H1 H 0 1 N N N -1.441 2.535 13.394 -8.118 -3.624 0.384 H1 LN2 37 LN2 H2 H2 H 0 1 N N N 3.107 1.622 3.651 -1.682 4.475 2.367 H2 LN2 38 LN2 H3 H3 H 0 1 N N N 2.806 -0.336 2.174 -0.392 6.417 1.587 H3 LN2 39 LN2 H4 H4 H 0 1 N N N 0.937 -1.889 2.542 0.714 6.369 -0.609 H4 LN2 40 LN2 H5 H5 H 0 1 N N N -0.648 -1.503 4.388 0.535 4.373 -2.042 H5 LN2 41 LN2 H6 H6 H 0 1 N N N -1.555 0.948 5.891 -1.516 2.083 -2.198 H6 LN2 42 LN2 H7 H7 H 0 1 N N N -0.490 0.063 7.035 -0.044 1.409 -1.442 H7 LN2 43 LN2 H8 H8 H 0 1 N N N 0.471 3.683 7.798 -2.004 -0.522 -1.416 H8 LN2 44 LN2 H9 H9 H 0 1 N N N 1.310 2.627 9.514 -4.072 -2.074 -0.655 H9 LN2 45 LN2 H10 H10 H 0 1 N N N -0.229 0.528 10.884 -6.315 -0.433 0.242 H10 LN2 46 LN2 H11 H11 H 0 1 N N N 1.653 0.518 12.474 -7.641 -0.842 -1.813 H11 LN2 47 LN2 H12 H12 H 0 1 N N N 2.220 0.364 10.777 -6.179 0.105 -2.175 H12 LN2 48 LN2 H13 H13 H 0 1 N N N 2.371 1.934 11.636 -6.234 -1.631 -2.565 H13 LN2 49 LN2 H14 H14 H 0 1 N N N -1.364 4.264 6.257 -2.030 -0.573 1.634 H14 LN2 50 LN2 H15 H15 H 0 1 N N N -2.374 2.959 6.967 -2.249 -2.003 0.598 H15 LN2 51 LN2 H16 H16 H 0 1 N N N -0.217 5.387 8.819 -0.411 -2.873 -0.725 H16 LN2 52 LN2 H17 H17 H 0 1 N N N -1.103 7.075 10.351 2.029 -3.099 -0.945 H17 LN2 53 LN2 H18 H18 H 0 1 N N N -4.180 4.188 7.834 0.114 0.550 1.766 H18 LN2 54 LN2 H19 H19 H 0 1 N N N -5.073 5.865 9.373 2.556 0.340 1.556 H19 LN2 55 LN2 H20 H20 H 0 1 N N N -6.091 10.013 11.219 6.386 -3.843 0.458 H20 LN2 56 LN2 H21 H21 H 0 1 N N N -5.381 9.888 13.580 7.757 -1.901 -0.155 H21 LN2 57 LN2 H22 H22 H 0 1 N N N -2.493 6.901 12.564 4.223 0.529 -0.362 H22 LN2 58 LN2 H23 H23 H 0 1 N N N -3.391 9.229 16.581 8.863 0.669 0.163 H23 LN2 59 LN2 H24 H24 H 0 1 N N N -3.552 10.395 15.225 8.641 -0.555 -1.109 H24 LN2 60 LN2 H25 H25 H 0 1 N N N -4.949 9.370 15.698 8.769 1.166 -1.543 H25 LN2 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LN2 C21 C20 DOUB Y N 1 LN2 C21 C22 SING Y N 2 LN2 C20 C19 SING Y N 3 LN2 C22 C23 DOUB Y N 4 LN2 C19 C18 DOUB Y N 5 LN2 C23 C18 SING Y N 6 LN2 C23 C24 SING N N 7 LN2 C18 C17 SING N N 8 LN2 C24 O4 DOUB N N 9 LN2 C24 N1 SING N N 10 LN2 C17 N1 SING N N 11 LN2 N1 C12 SING N N 12 LN2 C11 C12 SING N N 13 LN2 C11 C10 SING N N 14 LN2 C12 C13 SING N N 15 LN2 C10 C25 DOUB Y N 16 LN2 C10 C9 SING Y N 17 LN2 C25 C26 SING Y N 18 LN2 C13 O1 DOUB N N 19 LN2 C13 N SING N N 20 LN2 C9 C8 DOUB Y N 21 LN2 C26 C7 DOUB Y N 22 LN2 F C5 SING N N 23 LN2 N C14 SING N N 24 LN2 C8 C7 SING Y N 25 LN2 C7 C6 SING N N 26 LN2 C5 C6 DOUB Y N 27 LN2 C5 C4 SING Y N 28 LN2 C6 C27 SING Y N 29 LN2 C14 C15 SING N N 30 LN2 C14 C16 SING N N 31 LN2 C4 C3 DOUB Y N 32 LN2 C16 O3 DOUB N N 33 LN2 C16 O2 SING N N 34 LN2 C27 C2 DOUB Y N 35 LN2 C3 C2 SING Y N 36 LN2 C2 C1 SING N N 37 LN2 C1 O DOUB N N 38 LN2 C1 C SING N N 39 LN2 O2 H1 SING N N 40 LN2 C22 H2 SING N N 41 LN2 C21 H3 SING N N 42 LN2 C20 H4 SING N N 43 LN2 C19 H5 SING N N 44 LN2 C17 H6 SING N N 45 LN2 C17 H7 SING N N 46 LN2 C12 H8 SING N N 47 LN2 N H9 SING N N 48 LN2 C14 H10 SING N N 49 LN2 C15 H11 SING N N 50 LN2 C15 H12 SING N N 51 LN2 C15 H13 SING N N 52 LN2 C11 H14 SING N N 53 LN2 C11 H15 SING N N 54 LN2 C9 H16 SING N N 55 LN2 C8 H17 SING N N 56 LN2 C25 H18 SING N N 57 LN2 C26 H19 SING N N 58 LN2 C4 H20 SING N N 59 LN2 C3 H21 SING N N 60 LN2 C27 H22 SING N N 61 LN2 C H23 SING N N 62 LN2 C H24 SING N N 63 LN2 C H25 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LN2 InChI InChI 1.06 "InChI=1S/C28H25FN2O5/c1-16(28(35)36)30-26(33)25(31-15-21-5-3-4-6-22(21)27(31)34)13-18-7-9-19(10-8-18)23-14-20(17(2)32)11-12-24(23)29/h3-12,14,16,25H,13,15H2,1-2H3,(H,30,33)(H,35,36)/t16-,25-/m0/s1" LN2 InChIKey InChI 1.06 TXGHAFIFHKHLOM-LMKMVOKYSA-N LN2 SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)[C@H](Cc1ccc(cc1)c2cc(ccc2F)C(C)=O)N3Cc4ccccc4C3=O)C(O)=O" LN2 SMILES CACTVS 3.385 "C[CH](NC(=O)[CH](Cc1ccc(cc1)c2cc(ccc2F)C(C)=O)N3Cc4ccccc4C3=O)C(O)=O" LN2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O)NC(=O)[C@H](Cc1ccc(cc1)c2cc(ccc2F)C(=O)C)N3Cc4ccccc4C3=O" LN2 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)NC(=O)C(Cc1ccc(cc1)c2cc(ccc2F)C(=O)C)N3Cc4ccccc4C3=O" # _pdbx_chem_comp_identifier.comp_id LN2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-3-[4-(5-ethanoyl-2-fluoranyl-phenyl)phenyl]-2-(3-oxidanylidene-1~{H}-isoindol-2-yl)propanoyl]amino]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LN2 "Create component" 2022-07-07 PDBE LN2 "Modify descriptor" 2022-08-22 RCSB LN2 "Initial release" 2023-04-26 RCSB #