data_LN5 # _chem_comp.id LN5 _chem_comp.name "N5-(1-iminopropyl)-L-ornithine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H17 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-2-azanyl-5-(propanimidoylamino)pentanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-07 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 187.239 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LN5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3I4A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LN5 CT1 CT1 C 0 1 N N N 2.386 -22.078 -14.350 -5.944 0.134 0.064 CT1 LN5 1 LN5 CH1 CH1 C 0 1 N N N 1.529 -21.929 -15.597 -4.708 -0.623 -0.427 CH1 LN5 2 LN5 CZ CZ C 0 1 N N N 1.139 -20.498 -15.908 -3.465 0.099 0.025 CZ LN5 3 LN5 NH2 NH2 N 0 1 N N N 1.442 -19.669 -14.796 -3.564 1.185 0.719 NH2 LN5 4 LN5 NE NE N 0 1 N N N 2.019 -19.885 -16.899 -2.229 -0.396 -0.300 NE LN5 5 LN5 CD CD C 0 1 N N N 2.048 -20.462 -18.257 -1.020 0.305 0.140 CD LN5 6 LN5 CG CG C 0 1 N N N 2.875 -19.552 -19.190 0.215 -0.451 -0.352 CG LN5 7 LN5 CB CB C 0 1 N N N 2.878 -20.075 -20.656 1.478 0.281 0.107 CB LN5 8 LN5 CA CA C 0 1 N N S 3.625 -19.146 -21.626 2.714 -0.476 -0.385 CA LN5 9 LN5 C C C 0 1 N N N 5.128 -19.145 -21.340 3.953 0.309 -0.039 C LN5 10 LN5 OA2 OA2 O 0 1 N N N 5.834 -19.925 -22.018 4.612 0.003 0.927 OA2 LN5 11 LN5 OA1 OA1 O 0 1 N N N 5.541 -18.346 -20.471 4.326 1.347 -0.805 OA1 LN5 12 LN5 N N N 0 1 N N N 3.417 -19.588 -23.014 2.771 -1.793 0.263 N LN5 13 LN5 H1H2 H1H2 H 0 0 N N N 1.165 -18.745 -15.059 -2.763 1.650 1.010 H1H2 LN5 14 LN5 H1T1 H1T1 H 0 0 N N N 3.448 -22.114 -14.636 -6.843 -0.388 -0.263 H1T1 LN5 15 LN5 H2T1 H2T1 H 0 0 N N N 2.215 -21.220 -13.683 -5.929 0.185 1.153 H2T1 LN5 16 LN5 H3T1 H3T1 H 0 0 N N N 2.115 -23.008 -13.828 -5.939 1.143 -0.347 H3T1 LN5 17 LN5 H1H1 H1H1 H 0 0 N N N 2.101 -22.319 -16.452 -4.713 -1.632 -0.016 H1H1 LN5 18 LN5 H2H1 H2H1 H 0 0 N N N 0.597 -22.484 -15.414 -4.723 -0.674 -1.516 H2H1 LN5 19 LN5 HNE HNE H 0 1 N N N 2.586 -19.096 -16.664 -2.155 -1.211 -0.821 HNE LN5 20 LN5 H1D H1D H 0 1 N N N 2.507 -21.461 -18.220 -1.016 1.314 -0.272 H1D LN5 21 LN5 H2D H2D H 0 1 N N N 1.021 -20.542 -18.642 -1.006 0.356 1.228 H2D LN5 22 LN5 H1G H1G H 0 1 N N N 2.437 -18.543 -19.177 0.211 -1.461 0.059 H1G LN5 23 LN5 H2G H2G H 0 1 N N N 3.913 -19.543 -18.827 0.201 -0.503 -1.441 H2G LN5 24 LN5 H1B H1B H 0 1 N N N 3.372 -21.058 -20.671 1.482 1.290 -0.305 H1B LN5 25 LN5 H2B H2B H 0 1 N N N 1.831 -20.128 -20.990 1.492 0.332 1.196 H2B LN5 26 LN5 HA HA H 0 1 N N N 3.226 -18.130 -21.485 2.654 -0.605 -1.465 HA LN5 27 LN5 H15 H15 H 0 1 N N N 6.485 -18.417 -20.398 5.128 1.819 -0.543 H15 LN5 28 LN5 H1N H1N H 0 1 N N N 3.370 -18.790 -23.615 2.826 -1.700 1.266 H1N LN5 29 LN5 H2N H2N H 0 1 N N N 4.178 -20.172 -23.295 1.982 -2.362 -0.004 H2N LN5 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LN5 CH1 CT1 SING N N 1 LN5 CZ CH1 SING N N 2 LN5 CZ NH2 DOUB N N 3 LN5 NH2 H1H2 SING N N 4 LN5 NE CZ SING N N 5 LN5 CD NE SING N N 6 LN5 CG CD SING N N 7 LN5 CB CG SING N N 8 LN5 CA C SING N N 9 LN5 CA CB SING N N 10 LN5 C OA1 SING N N 11 LN5 OA2 C DOUB N N 12 LN5 N CA SING N N 13 LN5 CT1 H1T1 SING N N 14 LN5 CT1 H2T1 SING N N 15 LN5 CT1 H3T1 SING N N 16 LN5 CH1 H1H1 SING N N 17 LN5 CH1 H2H1 SING N N 18 LN5 NE HNE SING N N 19 LN5 CD H1D SING N N 20 LN5 CD H2D SING N N 21 LN5 CG H1G SING N N 22 LN5 CG H2G SING N N 23 LN5 CB H1B SING N N 24 LN5 CB H2B SING N N 25 LN5 CA HA SING N N 26 LN5 OA1 H15 SING N N 27 LN5 N H1N SING N N 28 LN5 N H2N SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LN5 SMILES ACDLabs 10.04 "O=C(O)C(N)CCCNC(=[N@H])CC" LN5 SMILES_CANONICAL CACTVS 3.341 "CCC(=N)NCCC[C@H](N)C(O)=O" LN5 SMILES CACTVS 3.341 "CCC(=N)NCCC[CH](N)C(O)=O" LN5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(/CC)\NCCC[C@@H](C(=O)O)N" LN5 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(CC)NCCCC(C(=O)O)N" LN5 InChI InChI 1.03 "InChI=1S/C8H17N3O2/c1-2-7(10)11-5-3-4-6(9)8(12)13/h6H,2-5,9H2,1H3,(H2,10,11)(H,12,13)/t6-/m0/s1" LN5 InChIKey InChI 1.03 ZYIBCZWVLDODOL-LURJTMIESA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LN5 "SYSTEMATIC NAME" ACDLabs 10.04 "N~5~-[(1Z)-propanimidoyl]-L-ornithine" LN5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-(propanimidoylamino)pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LN5 "Create component" 2009-07-07 RCSB LN5 "Modify descriptor" 2011-06-04 RCSB LN5 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LN5 _pdbx_chem_comp_synonyms.name "(2S)-2-azanyl-5-(propanimidoylamino)pentanoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##