data_LN9 # _chem_comp.id LN9 _chem_comp.name "1-[2-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,6-bis(oxidanyl)phenyl]-3-(4-hydroxyphenyl)propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Phlorizin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-01 _chem_comp.pdbx_modified_date 2023-11-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 436.409 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LN9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8HIN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LN9 C1 C1 C 0 1 Y N N N N N 84.425 67.450 67.542 -5.679 -0.824 -1.479 C1 LN9 1 LN9 C2 C2 C 0 1 Y N N N N N 83.691 66.433 66.940 -7.044 -0.635 -1.578 C2 LN9 2 LN9 C3 C3 C 0 1 Y N N N N N 83.244 65.354 67.702 -7.832 -0.663 -0.436 C3 LN9 3 LN9 C4 C4 C 0 1 Y N N N N N 83.534 65.294 69.061 -7.246 -0.882 0.802 C4 LN9 4 LN9 C5 C5 C 0 1 Y N N N N N 84.274 66.307 69.626 -5.880 -1.071 0.896 C5 LN9 5 LN9 C6 C6 C 0 1 Y N N N N N 84.727 67.399 68.894 -5.098 -1.041 -0.244 C6 LN9 6 LN9 C7 C7 C 0 1 N N N N N N 85.517 68.491 69.548 -3.609 -1.253 -0.140 C7 LN9 7 LN9 C8 C8 C 0 1 N N N N N N 84.995 68.783 70.945 -2.915 0.096 0.056 C8 LN9 8 LN9 C9 C9 C 0 1 N N N N N N 85.452 70.023 71.639 -1.426 -0.116 0.160 C9 LN9 9 LN9 O1 O1 O 0 1 N N N N N N 86.026 69.875 72.707 -0.966 -1.236 0.085 O1 LN9 10 LN9 C10 C10 C 0 1 Y N N N N N 85.188 71.374 71.095 -0.537 1.028 0.352 C10 LN9 11 LN9 C11 C11 C 0 1 Y N N N N N 84.249 71.632 70.060 -1.067 2.329 0.445 C11 LN9 12 LN9 C12 C12 C 0 1 Y N N N N N 84.017 72.893 69.562 -0.218 3.404 0.632 C12 LN9 13 LN9 C13 C13 C 0 1 Y N N N N N 84.688 73.966 70.101 1.153 3.203 0.727 C13 LN9 14 LN9 C14 C14 C 0 1 Y N N N N N 85.614 73.790 71.097 1.686 1.923 0.636 C14 LN9 15 LN9 C15 C15 C 0 1 Y N N N N N 85.848 72.530 71.603 0.854 0.836 0.450 C15 LN9 16 LN9 O2 O2 O 0 1 N N N N N N 86.815 72.502 72.577 1.375 -0.414 0.367 O2 LN9 17 LN9 C16 C16 C 0 1 N N S N N N 86.658 72.991 73.892 2.795 -0.532 0.475 C16 LN9 18 LN9 C17 C17 C 0 1 N N R N N N 86.819 74.508 73.982 3.184 -2.013 0.484 C17 LN9 19 LN9 C18 C18 C 0 1 N N S N N N 86.812 74.864 75.448 4.710 -2.131 0.539 C18 LN9 20 LN9 C19 C19 C 0 1 N N S N N N 85.508 74.382 76.065 5.313 -1.380 -0.652 C19 LN9 21 LN9 C20 C20 C 0 1 N N R N N N 85.522 72.884 75.896 4.841 0.077 -0.617 C20 LN9 22 LN9 O3 O3 O 0 1 N N N N N N 85.418 72.638 74.486 3.413 0.114 -0.640 O3 LN9 23 LN9 C21 C21 C 0 1 N N N N N N 84.421 72.151 76.552 5.391 0.820 -1.837 C21 LN9 24 LN9 O4 O4 O 0 1 N N N N N N 84.596 70.774 76.252 5.049 2.204 -1.745 O4 LN9 25 LN9 O5 O5 O 0 1 N N N N N N 85.414 74.713 77.435 6.739 -1.422 -0.571 O5 LN9 26 LN9 O6 O6 O 0 1 N N N N N N 87.019 76.251 75.667 5.085 -3.509 0.475 O6 LN9 27 LN9 O7 O7 O 0 1 N N N N N N 88.023 74.922 73.360 2.614 -2.649 1.630 O7 LN9 28 LN9 O8 O8 O 0 1 N N N N N N 84.468 75.219 69.632 1.978 4.265 0.911 O8 LN9 29 LN9 O9 O9 O 0 1 N N N N N N 83.499 70.696 69.453 -2.405 2.527 0.352 O9 LN9 30 LN9 O10 O10 O 0 1 N N N N N N 82.525 64.355 67.122 -9.174 -0.477 -0.530 O10 LN9 31 LN9 H1 H1 H 0 1 N N N N N N 84.763 68.288 66.950 -5.066 -0.806 -2.368 H1 LN9 32 LN9 H2 H2 H 0 1 N N N N N N 83.468 66.479 65.884 -7.498 -0.464 -2.543 H2 LN9 33 LN9 H3 H3 H 0 1 N N N N N N 83.185 64.467 69.662 -7.857 -0.905 1.693 H3 LN9 34 LN9 H4 H4 H 0 1 N N N N N N 84.512 66.252 70.678 -5.424 -1.240 1.860 H4 LN9 35 LN9 H5 H5 H 0 1 N N N N N N 86.570 68.181 69.616 -3.393 -1.900 0.711 H5 LN9 36 LN9 H6 H6 H 0 1 N N N N N N 85.442 69.403 68.938 -3.244 -1.720 -1.054 H6 LN9 37 LN9 H7 H7 H 0 1 N N N N N N 83.899 68.837 70.876 -3.131 0.743 -0.794 H7 LN9 38 LN9 H8 H8 H 0 1 N N N N N N 85.281 67.932 71.581 -3.280 0.563 0.971 H8 LN9 39 LN9 H9 H9 H 0 1 N N N N N N 83.314 73.039 68.755 -0.623 4.403 0.704 H9 LN9 40 LN9 H10 H10 H 0 1 N N N N N N 86.159 74.638 71.484 2.753 1.778 0.711 H10 LN9 41 LN9 H11 H11 H 0 1 N N N N N N 87.459 72.557 74.509 3.130 -0.062 1.399 H11 LN9 42 LN9 H12 H12 H 0 1 N N N N N N 85.956 74.984 73.494 2.814 -2.493 -0.422 H12 LN9 43 LN9 H13 H13 H 0 1 N N N N N N 87.629 74.306 75.928 5.076 -1.697 1.469 H13 LN9 44 LN9 H14 H14 H 0 1 N N N N N N 84.663 74.805 75.503 4.986 -1.847 -1.581 H14 LN9 45 LN9 H15 H15 H 0 1 N N N N N N 86.482 72.497 76.268 5.203 0.555 0.293 H15 LN9 46 LN9 H16 H16 H 0 1 N N N N N N 84.460 72.308 77.640 6.475 0.715 -1.868 H16 LN9 47 LN9 H17 H17 H 0 1 N N N N N N 83.452 72.501 76.165 4.958 0.398 -2.744 H17 LN9 48 LN9 H18 H18 H 0 1 N N N N N N 83.902 70.270 76.660 5.365 2.737 -2.487 H18 LN9 49 LN9 H19 H19 H 0 1 N N N N N N 84.588 74.396 77.782 7.107 -2.316 -0.582 H19 LN9 50 LN9 H20 H20 H 0 1 N N N N N N 87.007 76.430 76.600 4.732 -4.047 1.196 H20 LN9 51 LN9 H21 H21 H 0 1 N N N N N N 88.106 75.866 73.426 1.649 -2.608 1.663 H21 LN9 52 LN9 H22 H22 H 0 1 N N N N N N 85.008 75.836 70.111 2.143 4.479 1.839 H22 LN9 53 LN9 H23 H23 H 0 1 N N N N N N 83.691 69.844 69.827 -2.868 2.491 1.200 H23 LN9 54 LN9 H24 H24 H 0 1 N N N N N N 82.301 63.704 67.777 -9.677 -1.294 -0.658 H24 LN9 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LN9 C2 C1 DOUB Y N 1 LN9 C2 C3 SING Y N 2 LN9 O10 C3 SING N N 3 LN9 C1 C6 SING Y N 4 LN9 C3 C4 DOUB Y N 5 LN9 C6 C7 SING N N 6 LN9 C6 C5 DOUB Y N 7 LN9 C4 C5 SING Y N 8 LN9 O9 C11 SING N N 9 LN9 C7 C8 SING N N 10 LN9 C12 C11 DOUB Y N 11 LN9 C12 C13 SING Y N 12 LN9 O8 C13 SING N N 13 LN9 C11 C10 SING Y N 14 LN9 C13 C14 DOUB Y N 15 LN9 C8 C9 SING N N 16 LN9 C10 C15 DOUB Y N 17 LN9 C10 C9 SING N N 18 LN9 C14 C15 SING Y N 19 LN9 C15 O2 SING N N 20 LN9 C9 O1 DOUB N N 21 LN9 O2 C16 SING N N 22 LN9 O7 C17 SING N N 23 LN9 C16 C17 SING N N 24 LN9 C16 O3 SING N N 25 LN9 C17 C18 SING N N 26 LN9 O3 C20 SING N N 27 LN9 C18 O6 SING N N 28 LN9 C18 C19 SING N N 29 LN9 C20 C19 SING N N 30 LN9 C20 C21 SING N N 31 LN9 C19 O5 SING N N 32 LN9 O4 C21 SING N N 33 LN9 C1 H1 SING N N 34 LN9 C2 H2 SING N N 35 LN9 C4 H3 SING N N 36 LN9 C5 H4 SING N N 37 LN9 C7 H5 SING N N 38 LN9 C7 H6 SING N N 39 LN9 C8 H7 SING N N 40 LN9 C8 H8 SING N N 41 LN9 C12 H9 SING N N 42 LN9 C14 H10 SING N N 43 LN9 C16 H11 SING N N 44 LN9 C17 H12 SING N N 45 LN9 C18 H13 SING N N 46 LN9 C19 H14 SING N N 47 LN9 C20 H15 SING N N 48 LN9 C21 H16 SING N N 49 LN9 C21 H17 SING N N 50 LN9 O4 H18 SING N N 51 LN9 O5 H19 SING N N 52 LN9 O6 H20 SING N N 53 LN9 O7 H21 SING N N 54 LN9 O8 H22 SING N N 55 LN9 O9 H23 SING N N 56 LN9 O10 H24 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LN9 InChI InChI 1.06 "InChI=1S/C21H24O10/c22-9-16-18(27)19(28)20(29)21(31-16)30-15-8-12(24)7-14(26)17(15)13(25)6-3-10-1-4-11(23)5-2-10/h1-2,4-5,7-8,16,18-24,26-29H,3,6,9H2/t16-,18-,19+,20-,21-/m1/s1" LN9 InChIKey InChI 1.06 IOUVKUPGCMBWBT-QNDFHXLGSA-N LN9 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](Oc2cc(O)cc(O)c2C(=O)CCc3ccc(O)cc3)[C@H](O)[C@@H](O)[C@@H]1O" LN9 SMILES CACTVS 3.385 "OC[CH]1O[CH](Oc2cc(O)cc(O)c2C(=O)CCc3ccc(O)cc3)[CH](O)[CH](O)[CH]1O" LN9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCC(=O)c2c(cc(cc2O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O)O" LN9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCC(=O)c2c(cc(cc2OC3C(C(C(C(O3)CO)O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id LN9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[2-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,6-bis(oxidanyl)phenyl]-3-(4-hydroxyphenyl)propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LN9 "Create component" 2022-12-01 PDBJ LN9 "Initial release" 2023-11-22 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LN9 _pdbx_chem_comp_synonyms.name Phlorizin _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #