data_LNA # _chem_comp.id LNA _chem_comp.name "(9E,12Z)-10-nitrooctadeca-9,12-dienoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H31 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-05-05 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.443 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LNA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3CWD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LNA O20 O20 O 0 1 N N N -18.570 -14.684 11.949 9.135 2.140 -0.124 O20 LNA 1 LNA C1 C1 C 0 1 N N N -18.909 -13.769 11.173 8.113 1.388 0.313 C1 LNA 2 LNA O19 O19 O 0 1 N N N -18.914 -12.571 11.475 8.198 0.808 1.369 O19 LNA 3 LNA C2 C2 C 0 1 N N N -19.348 -14.128 9.793 6.859 1.267 -0.514 C2 LNA 4 LNA C3 C3 C 0 1 N N N -20.779 -14.577 9.869 5.859 0.359 0.205 C3 LNA 5 LNA C4 C4 C 0 1 N N N -21.488 -14.298 8.573 4.586 0.237 -0.634 C4 LNA 6 LNA C5 C5 C 0 1 N N N -22.963 -14.256 8.895 3.587 -0.671 0.085 C5 LNA 7 LNA C6 C6 C 0 1 N N N -23.118 -14.172 10.392 2.313 -0.794 -0.755 C6 LNA 8 LNA C7 C7 C 0 1 N N N -24.242 -15.034 10.880 1.314 -1.701 -0.036 C7 LNA 9 LNA C8 C8 C 0 1 N N N -23.642 -15.969 11.884 0.041 -1.824 -0.875 C8 LNA 10 LNA C9 C9 C 0 1 N N N -23.574 -17.275 11.158 -0.944 -2.718 -0.167 C9 LNA 11 LNA C10 C10 C 0 1 N N N -24.069 -18.425 11.604 -2.122 -2.256 0.172 C10 LNA 12 LNA N21 N21 N 1 1 N N N -23.917 -19.368 10.827 -3.139 -3.169 0.742 N21 LNA 13 LNA O22 O22 O 0 1 N N N -23.368 -19.207 9.787 -2.880 -4.349 0.896 O22 LNA 14 LNA O23 O23 O -1 1 N N N -24.326 -20.449 11.111 -4.235 -2.739 1.056 O23 LNA 15 LNA C11 C11 C 0 1 N N N -24.605 -18.641 13.038 -2.443 -0.796 -0.019 C11 LNA 16 LNA C12 C12 C 0 1 N N N -25.306 -20.020 13.207 -2.981 -0.578 -1.410 C12 LNA 17 LNA C13 C13 C 0 1 N N N -25.742 -20.145 14.495 -4.122 0.042 -1.581 C13 LNA 18 LNA C14 C14 C 0 1 N N N -25.353 -18.993 15.436 -4.800 0.708 -0.412 C14 LNA 19 LNA C15 C15 C 0 1 N N N -24.552 -19.367 16.693 -5.093 2.170 -0.757 C15 LNA 20 LNA C16 C16 C 0 1 N N N -23.103 -19.764 16.411 -5.782 2.846 0.430 C16 LNA 21 LNA C17 C17 C 0 1 N N N -22.636 -21.057 17.097 -6.075 4.307 0.085 C17 LNA 22 LNA C18 C18 C 0 1 N N N -22.525 -22.240 16.175 -6.764 4.984 1.272 C18 LNA 23 LNA H2 H2 H 0 1 N N N -19.262 -13.254 9.131 6.419 2.255 -0.653 H2 LNA 24 LNA H2A H2A H 0 1 N N N -18.715 -14.930 9.386 7.105 0.839 -1.486 H2A LNA 25 LNA H3 H3 H 0 1 N N N -20.807 -15.658 10.070 6.300 -0.628 0.344 H3 LNA 26 LNA H3A H3A H 0 1 N N N -21.283 -14.026 10.677 5.614 0.788 1.177 H3A LNA 27 LNA H4 H4 H 0 1 N N N -21.158 -13.337 8.152 4.146 1.224 -0.773 H4 LNA 28 LNA H4A H4A H 0 1 N N N -21.266 -15.072 7.824 4.832 -0.191 -1.606 H4A LNA 29 LNA H5 H5 H 0 1 N N N -23.424 -13.377 8.421 4.027 -1.658 0.224 H5 LNA 30 LNA H5A H5A H 0 1 N N N -23.460 -15.160 8.513 3.341 -0.243 1.057 H5A LNA 31 LNA H6 H6 H 0 1 N N N -22.183 -14.509 10.864 1.873 0.194 -0.894 H6 LNA 32 LNA H6A H6A H 0 1 N N N -23.343 -13.129 10.657 2.559 -1.222 -1.727 H6A LNA 33 LNA H7 H7 H 0 1 N N N -25.028 -14.420 11.344 1.754 -2.689 0.103 H7 LNA 34 LNA H7A H7A H 0 1 N N N -24.713 -15.584 10.052 1.068 -1.273 0.936 H7A LNA 35 LNA H8 H8 H 0 1 N N N -22.643 -15.632 12.200 -0.400 -0.837 -1.014 H8 LNA 36 LNA H8A H8A H 0 1 N N N -24.231 -16.030 12.811 0.286 -2.252 -1.847 H8A LNA 37 LNA H9 H9 H 0 1 N N N -23.084 -17.284 10.196 -0.678 -3.740 0.062 H9 LNA 38 LNA H11 H11 H 0 1 N N N -23.758 -18.591 13.739 -3.191 -0.490 0.712 H11 LNA 39 LNA H11A H11A H 0 0 N N N -25.349 -17.857 13.242 -1.537 -0.205 0.117 H11A LNA 40 LNA H12 H12 H 0 1 N N N -25.428 -20.760 12.430 -2.425 -0.933 -2.266 H12 LNA 41 LNA H13 H13 H 0 1 N N N -26.320 -20.994 14.829 -4.577 0.076 -2.560 H13 LNA 42 LNA H14 H14 H 0 1 N N N -24.734 -18.294 14.854 -5.735 0.192 -0.191 H14 LNA 43 LNA H14A H14A H 0 0 N N N -26.304 -18.584 15.806 -4.147 0.665 0.460 H14A LNA 44 LNA H15 H15 H 0 1 N N N -24.541 -18.493 17.361 -4.159 2.686 -0.977 H15 LNA 45 LNA H15A H15A H 0 0 N N N -25.044 -20.244 17.138 -5.746 2.213 -1.629 H15A LNA 46 LNA H16 H16 H 0 1 N N N -23.002 -19.908 15.325 -6.716 2.330 0.650 H16 LNA 47 LNA H16A H16A H 0 0 N N N -22.476 -18.955 16.815 -5.129 2.803 1.302 H16A LNA 48 LNA H17 H17 H 0 1 N N N -21.642 -20.871 17.529 -5.141 4.823 -0.135 H17 LNA 49 LNA H17A H17A H 0 0 N N N -23.397 -21.311 17.850 -6.728 4.351 -0.787 H17A LNA 50 LNA H18 H18 H 0 1 N N N -22.498 -21.891 15.132 -7.698 4.468 1.492 H18 LNA 51 LNA H18A H18A H 0 0 N N N -21.602 -22.795 16.400 -6.111 4.940 2.144 H18A LNA 52 LNA H18B H18B H 0 0 N N N -23.394 -22.899 16.319 -6.973 6.025 1.026 H18B LNA 53 LNA HO20 HO20 H 0 0 N N N -18.323 -14.313 12.788 9.919 2.188 0.441 HO20 LNA 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LNA O20 C1 SING N N 1 LNA C1 O19 DOUB N N 2 LNA C1 C2 SING N N 3 LNA C2 C3 SING N N 4 LNA C3 C4 SING N N 5 LNA C4 C5 SING N N 6 LNA C5 C6 SING N N 7 LNA C6 C7 SING N N 8 LNA C7 C8 SING N N 9 LNA C8 C9 SING N N 10 LNA C9 C10 DOUB N N 11 LNA C10 N21 SING N N 12 LNA C10 C11 SING N N 13 LNA N21 O22 DOUB N N 14 LNA N21 O23 SING N N 15 LNA C11 C12 SING N N 16 LNA C12 C13 DOUB N N 17 LNA C13 C14 SING N N 18 LNA C14 C15 SING N N 19 LNA C15 C16 SING N N 20 LNA C16 C17 SING N N 21 LNA C17 C18 SING N N 22 LNA C2 H2 SING N N 23 LNA C2 H2A SING N N 24 LNA C3 H3 SING N N 25 LNA C3 H3A SING N E 26 LNA C4 H4 SING N N 27 LNA C4 H4A SING N N 28 LNA C5 H5 SING N N 29 LNA C5 H5A SING N N 30 LNA C6 H6 SING N N 31 LNA C6 H6A SING N N 32 LNA C7 H7 SING N N 33 LNA C7 H7A SING N N 34 LNA C8 H8 SING N Z 35 LNA C8 H8A SING N N 36 LNA C9 H9 SING N N 37 LNA C11 H11 SING N N 38 LNA C11 H11A SING N N 39 LNA C12 H12 SING N N 40 LNA C13 H13 SING N N 41 LNA C14 H14 SING N N 42 LNA C14 H14A SING N N 43 LNA C15 H15 SING N N 44 LNA C15 H15A SING N N 45 LNA C16 H16 SING N N 46 LNA C16 H16A SING N N 47 LNA C17 H17 SING N N 48 LNA C17 H17A SING N N 49 LNA C18 H18 SING N N 50 LNA C18 H18A SING N N 51 LNA C18 H18B SING N N 52 LNA O20 HO20 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LNA SMILES ACDLabs 10.04 "[O-][N+](=O)/C(=C/CCCCCCCC(=O)O)C\C=C/CCCCC" LNA SMILES_CANONICAL CACTVS 3.341 "CCCCC\C=C/CC(=C/CCCCCCCC(O)=O)\[N+]([O-])=O" LNA SMILES CACTVS 3.341 "CCCCCC=CCC(=CCCCCCCCC(O)=O)[N+]([O-])=O" LNA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCC\C=C/C/C(=C\CCCCCCCC(=O)O)/[N+](=O)[O-]" LNA SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCC=CCC(=CCCCCCCCC(=O)O)[N+](=O)[O-]" LNA InChI InChI 1.03 "InChI=1S/C18H31NO4/c1-2-3-4-5-8-11-14-17(19(22)23)15-12-9-6-7-10-13-16-18(20)21/h8,11,15H,2-7,9-10,12-14,16H2,1H3,(H,20,21)/b11-8-,17-15+" LNA InChIKey InChI 1.03 LELVHAQTWXTCLY-XYWKCAQWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LNA "SYSTEMATIC NAME" ACDLabs 10.04 "(9E,12Z)-10-nitrooctadeca-9,12-dienoic acid" LNA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(9E,12Z)-10-nitrooctadeca-9,12-dienoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LNA "Create component" 2008-05-05 RCSB LNA "Modify descriptor" 2011-06-04 RCSB #