data_LNF # _chem_comp.id LNF _chem_comp.name "diethyl-[3-[[4-(4,5,9-trimethyl-10H-indolo[3,2-b]quinolin-5-ium-11-yl)phenyl]carbonylamino]propyl]azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H38 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4,N5,9-Trimethyl-11-(4-((3-diethylaminopropyl)carbamoyl)phenyl-10H-indolo[3,2-b]quinolinium" _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2022-07-07 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.670 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LNF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ABN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LNF C4 C1 C 0 1 Y N N 28.581 36.716 31.905 -5.112 2.897 -1.112 C4 LNF 1 LNF C6 C2 C 0 1 Y N N 26.035 31.845 30.167 -6.095 -2.606 -0.276 C6 LNF 2 LNF C7 C3 C 0 1 Y N N 25.467 30.597 29.842 -6.135 -3.984 -0.241 C7 LNF 3 LNF C8 C4 C 0 1 Y N N 25.236 29.622 30.831 -4.971 -4.712 -0.057 C8 LNF 4 LNF C13 C5 C 0 1 Y N N 29.360 33.094 37.640 0.735 1.414 2.075 C13 LNF 5 LNF C15 C6 C 0 1 Y N N 26.839 32.894 36.449 -0.058 0.278 -0.339 C15 LNF 6 LNF C17 C7 C 0 1 N N N 27.586 31.063 41.789 5.465 0.543 1.007 C17 LNF 7 LNF C20 C8 C 0 1 N N N 29.241 33.216 45.217 8.430 0.212 -2.071 C20 LNF 8 LNF C21 C9 C 0 1 N N N 30.443 32.281 45.398 9.147 -0.477 -3.234 C21 LNF 9 LNF C22 C10 C 0 1 N N N 26.867 33.536 45.489 9.972 -0.677 -0.462 C22 LNF 10 LNF C4C C11 C 0 1 Y N N 28.147 35.089 33.745 -3.211 1.906 -0.008 C4C LNF 11 LNF C11 C12 C 0 1 Y N N 27.697 33.822 34.315 -2.446 0.737 0.202 C11 LNF 12 LNF C11A C13 C 0 0 Y N N 27.900 33.449 35.706 -1.009 0.796 0.544 C11A LNF 13 LNF C12 C14 C 0 1 Y N N 29.167 33.530 36.317 -0.602 1.359 1.756 C12 LNF 14 LNF C13A C15 C 0 0 Y N N 28.295 32.550 38.398 1.687 0.906 1.187 C13A LNF 15 LNF C16A C16 C 0 0 N N N 28.539 32.102 39.737 3.123 0.970 1.527 C16A LNF 16 LNF O16 O1 O 0 1 N N N 29.664 32.129 40.242 3.477 1.464 2.579 O16 LNF 17 LNF N16 N1 N 0 1 N N N 27.499 31.648 40.450 4.040 0.480 0.669 N16 LNF 18 LNF C18 C17 C 0 1 N N N 27.574 32.170 42.849 6.285 -0.076 -0.127 C18 LNF 19 LNF C19 C18 C 0 1 N N N 27.673 31.550 44.261 7.772 -0.010 0.225 C19 LNF 20 LNF N20 N2 N 1 1 N N N 27.939 32.520 45.368 8.559 -0.610 -0.861 N20 LNF 21 LNF C23 C19 C 0 1 N N N 25.658 33.013 46.281 10.123 -1.631 0.724 C23 LNF 22 LNF C14 C20 C 0 1 Y N N 27.027 32.455 37.772 1.280 0.338 -0.023 C14 LNF 23 LNF C10A C21 C 0 0 Y N N 27.092 32.918 33.455 -3.096 -0.494 0.090 C10A LNF 24 LNF C5B C22 C 0 1 Y N N 26.930 33.284 32.154 -4.493 -0.512 -0.112 C5B LNF 25 LNF C5C C23 C 0 1 Y N N 26.343 32.139 31.520 -4.883 -1.937 -0.123 C5C LNF 26 LNF C9B C24 C 0 1 Y N N 26.147 31.114 32.505 -3.703 -2.677 0.059 C9B LNF 27 LNF N10 N3 N 0 1 Y N N 26.641 31.640 33.696 -2.644 -1.794 0.178 N10 LNF 28 LNF C9 C25 C 0 1 Y N N 25.582 29.872 32.171 -3.762 -4.067 0.093 C9 LNF 29 LNF C9A C26 C 0 1 N N N 25.360 28.806 33.227 -2.504 -4.873 0.293 C9A LNF 30 LNF N5 N4 N 1 1 Y N N 27.260 34.512 31.566 -5.168 0.617 -0.272 N5 LNF 31 LNF C5A C27 C 0 1 N N N 26.811 34.823 30.184 -6.619 0.558 -0.068 C5A LNF 32 LNF C4B C28 C 0 1 Y N N 28.001 35.476 32.329 -4.554 1.777 -0.485 C4B LNF 33 LNF C4A C29 C 0 1 N N N 28.687 37.184 30.459 -6.247 2.809 -2.103 C4A LNF 34 LNF C3 C30 C 0 1 Y N N 29.146 37.601 32.836 -4.570 4.133 -0.892 C3 LNF 35 LNF C2 C31 C 0 1 Y N N 29.186 37.288 34.191 -3.388 4.282 -0.176 C2 LNF 36 LNF C1 C32 C 0 1 Y N N 28.697 36.057 34.628 -2.705 3.184 0.257 C1 LNF 37 LNF H6 H1 H 0 1 N N N 26.234 32.571 29.393 -7.012 -2.057 -0.428 H6 LNF 38 LNF H7 H2 H 0 1 N N N 25.204 30.385 28.816 -7.079 -4.496 -0.358 H7 LNF 39 LNF H8 H3 H 0 1 N N N 24.790 28.677 30.559 -5.010 -5.791 -0.030 H8 LNF 40 LNF H13 H4 H 0 1 N N N 30.340 33.176 38.087 1.050 1.853 3.011 H13 LNF 41 LNF H15 H5 H 0 1 N N N 25.864 32.804 35.994 -0.373 -0.161 -1.274 H15 LNF 42 LNF H172 H6 H 0 0 N N N 26.727 30.395 41.951 5.760 1.583 1.143 H172 LNF 43 LNF H171 H7 H 0 0 N N N 28.519 30.487 41.875 5.645 -0.010 1.929 H171 LNF 44 LNF H202 H8 H 0 0 N N N 29.288 33.657 44.211 8.879 1.189 -1.896 H202 LNF 45 LNF H201 H9 H 0 0 N N N 29.301 34.015 45.971 7.375 0.335 -2.316 H201 LNF 46 LNF H212 H10 H 0 0 N N N 31.375 32.853 45.275 9.051 0.133 -4.133 H212 LNF 47 LNF H211 H11 H 0 0 N N N 30.415 31.838 46.405 10.202 -0.600 -2.990 H211 LNF 48 LNF H213 H12 H 0 0 N N N 30.402 31.481 44.644 8.698 -1.455 -3.409 H213 LNF 49 LNF H222 H13 H 0 0 N N N 27.273 34.419 46.004 10.569 -1.040 -1.299 H222 LNF 50 LNF H221 H14 H 0 0 N N N 26.533 33.821 44.480 10.316 0.317 -0.175 H221 LNF 51 LNF H12 H15 H 0 1 N N N 30.001 33.932 35.762 -1.338 1.752 2.443 H12 LNF 52 LNF H16 H16 H 0 1 N N N 26.592 31.714 40.034 3.758 0.086 -0.171 H16 LNF 53 LNF H182 H17 H 0 0 N N N 28.430 32.841 42.685 5.989 -1.116 -0.263 H182 LNF 54 LNF H181 H18 H 0 0 N N N 26.638 32.743 42.767 6.105 0.476 -1.049 H181 LNF 55 LNF H192 H19 H 0 0 N N N 26.722 31.041 44.476 8.069 1.030 0.357 H192 LNF 56 LNF H191 H20 H 0 0 N N N 28.489 30.813 44.252 7.951 -0.559 1.150 H191 LNF 57 LNF H232 H22 H 0 0 N N N 24.892 33.800 46.344 9.652 -2.585 0.485 H232 LNF 58 LNF H231 H23 H 0 0 N N N 25.239 32.133 45.771 11.181 -1.790 0.930 H231 LNF 59 LNF H233 H24 H 0 0 N N N 25.978 32.732 47.295 9.643 -1.199 1.602 H233 LNF 60 LNF H14 H25 H 0 1 N N N 26.193 32.040 38.319 2.014 -0.062 -0.706 H14 LNF 61 LNF H10 H26 H 0 1 N N N 26.664 31.169 34.578 -1.717 -2.054 0.304 H10 LNF 62 LNF H9A2 H27 H 0 0 N N N 26.255 28.171 33.302 -2.059 -5.098 -0.677 H9A2 LNF 63 LNF H9A1 H28 H 0 0 N N N 25.169 29.286 34.198 -1.797 -4.301 0.893 H9A1 LNF 64 LNF H9A3 H29 H 0 0 N N N 24.495 28.187 32.947 -2.746 -5.804 0.806 H9A3 LNF 65 LNF H5A2 H30 H 0 0 N N N 27.165 35.825 29.900 -6.852 0.818 0.964 H5A2 LNF 66 LNF H5A3 H31 H 0 0 N N N 27.223 34.078 29.488 -7.109 1.263 -0.740 H5A3 LNF 67 LNF H5A1 H32 H 0 0 N N N 25.712 34.796 30.141 -6.975 -0.451 -0.278 H5A1 LNF 68 LNF H4A1 H33 H 0 0 N N N 27.796 37.773 30.197 -7.197 2.880 -1.574 H4A1 LNF 69 LNF H4A3 H34 H 0 0 N N N 29.586 37.807 30.340 -6.167 3.627 -2.820 H4A3 LNF 70 LNF H4A2 H35 H 0 0 N N N 28.756 36.310 29.795 -6.195 1.857 -2.631 H4A2 LNF 71 LNF H3 H36 H 0 1 N N N 29.556 38.540 32.495 -5.074 5.003 -1.284 H3 LNF 72 LNF H2 H37 H 0 1 N N N 29.593 37.994 34.900 -3.007 5.268 0.039 H2 LNF 73 LNF H1 H38 H 0 1 N N N 28.738 35.830 35.683 -1.787 3.320 0.809 H1 LNF 74 LNF H20N H39 H 0 0 N N N 27.967 32.003 46.223 8.219 -1.541 -1.048 H20N LNF 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LNF C7 C6 DOUB Y N 1 LNF C7 C8 SING Y N 2 LNF C6 C5C SING Y N 3 LNF C5A N5 SING N N 4 LNF C4A C4 SING N N 5 LNF C8 C9 DOUB Y N 6 LNF C5C C5B SING Y N 7 LNF C5C C9B DOUB Y N 8 LNF N5 C5B DOUB Y N 9 LNF N5 C4B SING Y N 10 LNF C4 C4B DOUB Y N 11 LNF C4 C3 SING Y N 12 LNF C5B C10A SING Y N 13 LNF C9 C9B SING Y N 14 LNF C9 C9A SING N N 15 LNF C4B C4C SING Y N 16 LNF C9B N10 SING Y N 17 LNF C3 C2 DOUB Y N 18 LNF C10A N10 SING Y N 19 LNF C10A C11 DOUB Y N 20 LNF C4C C11 SING Y N 21 LNF C4C C1 DOUB Y N 22 LNF C2 C1 SING Y N 23 LNF C11 C11A SING N N 24 LNF C11A C12 DOUB Y N 25 LNF C11A C15 SING Y N 26 LNF C12 C13 SING Y N 27 LNF C15 C14 DOUB Y N 28 LNF C13 C13A DOUB Y N 29 LNF C14 C13A SING Y N 30 LNF C13A C16A SING N N 31 LNF C16A O16 DOUB N N 32 LNF C16A N16 SING N N 33 LNF N16 C17 SING N N 34 LNF C17 C18 SING N N 35 LNF C18 C19 SING N N 36 LNF C19 N20 SING N N 37 LNF C20 N20 SING N N 38 LNF C20 C21 SING N N 39 LNF N20 C22 SING N N 40 LNF C22 C23 SING N N 41 LNF C6 H6 SING N N 42 LNF C7 H7 SING N N 43 LNF C8 H8 SING N N 44 LNF C13 H13 SING N N 45 LNF C15 H15 SING N N 46 LNF C17 H172 SING N N 47 LNF C17 H171 SING N N 48 LNF C20 H202 SING N N 49 LNF C20 H201 SING N N 50 LNF C21 H212 SING N N 51 LNF C21 H211 SING N N 52 LNF C21 H213 SING N N 53 LNF C22 H222 SING N N 54 LNF C22 H221 SING N N 55 LNF C12 H12 SING N N 56 LNF N16 H16 SING N N 57 LNF C18 H182 SING N N 58 LNF C18 H181 SING N N 59 LNF C19 H192 SING N N 60 LNF C19 H191 SING N N 61 LNF C23 H232 SING N N 62 LNF C23 H231 SING N N 63 LNF C23 H233 SING N N 64 LNF C14 H14 SING N N 65 LNF N10 H10 SING N N 66 LNF C9A H9A2 SING N N 67 LNF C9A H9A1 SING N N 68 LNF C9A H9A3 SING N N 69 LNF C5A H5A2 SING N N 70 LNF C5A H5A3 SING N N 71 LNF C5A H5A1 SING N N 72 LNF C4A H4A1 SING N N 73 LNF C4A H4A3 SING N N 74 LNF C4A H4A2 SING N N 75 LNF C3 H3 SING N N 76 LNF C2 H2 SING N N 77 LNF C1 H1 SING N N 78 LNF N20 H20N SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LNF InChI InChI 1.06 "InChI=1S/C32H36N4O/c1-6-36(7-2)20-10-19-33-32(37)24-17-15-23(16-18-24)27-25-13-9-12-22(4)30(25)35(5)31-26-14-8-11-21(3)28(26)34-29(27)31/h8-9,11-18H,6-7,10,19-20H2,1-5H3,(H,33,37)/p+2" LNF InChIKey InChI 1.06 WLKGFBFIAFQINR-UHFFFAOYSA-P LNF SMILES_CANONICAL CACTVS 3.385 "CC[NH+](CC)CCCNC(=O)c1ccc(cc1)c2c3[nH]c4c(C)cccc4c3[n+](C)c5c(C)cccc25" LNF SMILES CACTVS 3.385 "CC[NH+](CC)CCCNC(=O)c1ccc(cc1)c2c3[nH]c4c(C)cccc4c3[n+](C)c5c(C)cccc25" LNF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[NH+](CC)CCCNC(=O)c1ccc(cc1)c2c3cccc(c3[n+](c4c2[nH]c5c4cccc5C)C)C" LNF SMILES "OpenEye OEToolkits" 2.0.7 "CC[NH+](CC)CCCNC(=O)c1ccc(cc1)c2c3cccc(c3[n+](c4c2[nH]c5c4cccc5C)C)C" # _pdbx_chem_comp_identifier.comp_id LNF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "diethyl-[3-[[4-(4,5,9-trimethyl-10~{H}-indolo[3,2-b]quinolin-5-ium-11-yl)phenyl]carbonylamino]propyl]azanium" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LNF _pdbx_chem_comp_synonyms.name "4,N5,9-Trimethyl-11-(4-((3-diethylaminopropyl)carbamoyl)phenyl-10H-indolo[3,2-b]quinolinium" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LNF "Create component" 2022-07-07 PDBE LNF "Modify synonyms" 2022-08-13 PDBE LNF "Modify charge" 2022-08-15 PDBE LNF "Modify descriptor" 2022-08-22 RCSB LNF "Initial release" 2022-11-16 RCSB #