data_LNK # _chem_comp.id LNK _chem_comp.name PENTANE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-05-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 72.149 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LNK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1IN3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LNK C1 C1 C 0 1 N N N N N N -4.205 -3.032 -13.109 -0.343 0.000 2.498 C1 LNK 1 LNK C2 C2 C 0 1 N N N N N N -4.827 -1.793 -12.455 0.539 0.000 1.249 C2 LNK 2 LNK C3 C3 C 0 1 N N N N N N -4.600 -0.506 -13.254 -0.343 0.000 0.000 C3 LNK 3 LNK C4 C4 C 0 1 N N N N N N -3.122 -0.096 -13.238 0.539 0.000 -1.249 C4 LNK 4 LNK C5 C5 C 0 1 N N N N N N -2.960 1.366 -13.645 -0.343 0.000 -2.498 C5 LNK 5 LNK H11 H11 H 0 1 N N N N N N -4.845 -3.383 -13.919 0.285 0.000 3.388 H11 LNK 6 LNK H12 H12 H 0 1 N N N N N N -3.224 -2.799 -13.517 -0.972 0.890 2.498 H12 LNK 7 LNK H13 H13 H 0 1 N N N N N N -3.118 -2.873 -13.303 -0.972 -0.890 2.498 H13 LNK 8 LNK H21 H21 H 0 1 N N N N N N -5.899 -1.962 -12.349 1.169 0.890 1.249 H21 LNK 9 LNK H22 H22 H 0 1 N N N N N N -4.403 -1.653 -11.459 1.169 -0.890 1.249 H22 LNK 10 LNK H31 H31 H 0 1 N N N N N N -4.945 -0.631 -14.281 -0.972 -0.890 0.000 H31 LNK 11 LNK H32 H32 H 0 1 N N N N N N -5.188 0.281 -12.779 -0.972 0.890 0.000 H32 LNK 12 LNK H41 H41 H 0 1 N N N N N N -2.559 -0.713 -13.939 1.169 0.890 -1.249 H41 LNK 13 LNK H42 H42 H 0 1 N N N N N N -2.716 -0.223 -12.233 1.169 -0.890 -1.249 H42 LNK 14 LNK H51 H51 H 0 1 N N N N N N -3.336 1.496 -14.660 0.285 0.000 -3.388 H51 LNK 15 LNK H52 H52 H 0 1 N N N N N N -3.533 1.990 -12.958 -0.972 -0.890 -2.498 H52 LNK 16 LNK H23 H23 H 0 1 N N N N N N -3.582 2.041 -13.012 -0.972 0.890 -2.498 H23 LNK 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LNK C1 C2 SING N N 1 LNK C1 H11 SING N N 2 LNK C1 H12 SING N N 3 LNK C1 H13 SING N N 4 LNK C2 C3 SING N N 5 LNK C2 H21 SING N N 6 LNK C2 H22 SING N N 7 LNK C3 C4 SING N N 8 LNK C3 H31 SING N N 9 LNK C3 H32 SING N N 10 LNK C4 C5 SING N N 11 LNK C4 H41 SING N N 12 LNK C4 H42 SING N N 13 LNK C5 H51 SING N N 14 LNK C5 H52 SING N N 15 LNK C5 H23 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LNK SMILES ACDLabs 10.04 CCCCC LNK SMILES_CANONICAL CACTVS 3.341 CCCCC LNK SMILES CACTVS 3.341 CCCCC LNK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCC LNK SMILES "OpenEye OEToolkits" 1.5.0 CCCCC LNK InChI InChI 1.03 InChI=1S/C5H12/c1-3-5-4-2/h3-5H2,1-2H3 LNK InChIKey InChI 1.03 OFBQJSOFQDEBGM-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LNK "SYSTEMATIC NAME" ACDLabs 10.04 pentane LNK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 pentane # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LNK "Create component" 2001-05-15 RCSB LNK "Modify descriptor" 2011-06-04 RCSB LNK "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 LNK GLN None Crosslinker "Amino-acid side chain" "Any position" C1 NE2 ? ? 2 LNK GLN None Crosslinker "Amino-acid side chain" "Any position" C5 NE2 ? ? #