data_LNT # _chem_comp.id LNT _chem_comp.name "N-[(2S)-2-amino-1,1-dihydroxy-4-methylpentyl]-L-threonine" _chem_comp.type PEPTIDE-LIKE _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H22 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-11-07 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 250.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LNT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3b7v _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LNT N14 N14 N 0 1 N N N 18.072 24.888 18.127 -1.660 1.559 0.901 N14 LNT 1 LNT CA C15 C 0 1 N N S 17.272 23.840 18.782 -1.646 0.192 0.364 CA LNT 2 LNT C16 C16 C 0 1 N N N 15.755 24.030 18.438 -0.374 -0.020 -0.460 C16 LNT 3 LNT C17 C17 C 0 1 N N N 17.503 23.782 20.293 -2.872 -0.019 -0.527 C17 LNT 4 LNT C18 C18 C 0 1 N N N 18.907 23.615 20.902 -4.141 0.069 0.322 C18 LNT 5 LNT C19 C19 C 0 1 N N N 19.934 23.032 19.915 -5.369 -0.016 -0.586 C19 LNT 6 LNT C20 C20 C 0 1 N N N 19.474 24.940 21.470 -4.166 -1.087 1.324 C20 LNT 7 LNT O21 O21 O 0 1 N N N 15.028 23.405 19.446 -0.361 -1.350 -0.983 O21 LNT 8 LNT O22 O22 O 0 1 N N N 15.429 25.417 18.563 -0.345 0.916 -1.539 O22 LNT 9 LNT N23 N23 N 0 1 N N N 15.499 23.537 17.090 0.803 0.182 0.396 N23 LNT 10 LNT C24 C24 C 0 1 N N S 14.292 22.780 16.766 2.045 -0.013 -0.363 C24 LNT 11 LNT C C25 C 0 1 N N N 14.363 21.359 17.378 2.655 -1.341 0.004 C LNT 12 LNT O O26 O 0 1 N N N 15.402 20.710 17.477 2.110 -2.052 0.815 O LNT 13 LNT C27 C27 C 0 1 N N R 14.030 22.692 15.242 3.029 1.110 -0.029 C27 LNT 14 LNT OG1 OG1 O 0 1 N N N 12.693 22.246 14.994 3.300 1.104 1.374 OG1 LNT 15 LNT C29 C29 C 0 1 N N N 14.901 21.652 14.520 2.420 2.457 -0.424 C29 LNT 16 LNT H HN14 H 0 1 N N N 17.886 24.885 17.144 -0.896 1.703 1.543 H LNT 17 LNT H2 HN1A H 0 1 N Y N 17.830 25.780 18.509 -1.640 2.240 0.156 H2 LNT 18 LNT H15 H15 H 0 1 N N N 17.606 22.869 18.387 -1.668 -0.522 1.187 H15 LNT 19 LNT H17 H17 H 0 1 N N N 17.126 24.739 20.684 -2.897 0.751 -1.299 H17 LNT 20 LNT H17A H17A H 0 0 N N N 16.926 22.914 20.644 -2.816 -1.001 -0.996 H17A LNT 21 LNT H18 H18 H 0 1 N N N 18.758 22.898 21.723 -4.153 1.017 0.860 H18 LNT 22 LNT H19 H19 H 0 1 N N N 20.910 22.940 20.413 -5.358 -0.964 -1.125 H19 LNT 23 LNT H19A H19A H 0 0 N N N 19.598 22.039 19.580 -6.274 0.047 0.019 H19A LNT 24 LNT H19B H19B H 0 0 N N N 20.027 23.700 19.046 -5.352 0.807 -1.300 H19B LNT 25 LNT H20 H20 H 0 1 N N N 20.475 24.761 21.890 -3.291 -1.026 1.971 H20 LNT 26 LNT H20A H20A H 0 0 N N N 19.543 25.685 20.663 -5.070 -1.024 1.929 H20A LNT 27 LNT H20B H20B H 0 0 N N N 18.807 25.315 22.260 -4.154 -2.034 0.785 H20B LNT 28 LNT HO21 HO21 H 0 0 N N N 14.099 23.499 19.272 -0.379 -2.039 -0.304 HO21 LNT 29 LNT HO22 HO22 H 0 0 N N N 14.511 25.547 18.357 -0.352 1.842 -1.258 HO22 LNT 30 LNT HN23 HN23 H 0 0 N N N 15.471 24.349 16.508 0.783 1.094 0.828 HN23 LNT 31 LNT H24 H24 H 0 1 N N N 13.447 23.329 17.207 1.825 0.003 -1.431 H24 LNT 32 LNT OXT O5 O 0 1 N Y N 13.151 20.768 17.854 3.803 -1.734 -0.570 OXT LNT 33 LNT H27 H27 H 0 1 N N N 14.246 23.705 14.871 3.958 0.956 -0.578 H27 LNT 34 LNT HOG1 HOG1 H 0 0 N N N 12.544 22.196 14.057 3.918 1.791 1.659 HOG1 LNT 35 LNT H29 H29 H 0 1 N N N 14.657 21.650 13.447 3.159 3.245 -0.283 H29 LNT 36 LNT H29A H29A H 0 0 N N N 15.963 21.907 14.654 2.118 2.425 -1.471 H29A LNT 37 LNT H29B H29B H 0 0 N N N 14.707 20.655 14.942 1.549 2.659 0.199 H29B LNT 38 LNT HXT H22 H 0 1 N Y N 13.335 19.903 18.201 4.155 -2.594 -0.302 HXT LNT 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LNT N14 CA SING N N 1 LNT N14 H SING N N 2 LNT N14 H2 SING N N 3 LNT CA C17 SING N N 4 LNT CA H15 SING N N 5 LNT C16 CA SING N N 6 LNT C16 O22 SING N N 7 LNT C16 O21 SING N N 8 LNT C17 C18 SING N N 9 LNT C17 H17 SING N N 10 LNT C17 H17A SING N N 11 LNT C18 C20 SING N N 12 LNT C18 H18 SING N N 13 LNT C19 C18 SING N N 14 LNT C19 H19 SING N N 15 LNT C19 H19A SING N N 16 LNT C19 H19B SING N N 17 LNT C20 H20 SING N N 18 LNT C20 H20A SING N N 19 LNT C20 H20B SING N N 20 LNT O21 HO21 SING N N 21 LNT O22 HO22 SING N N 22 LNT N23 C16 SING N N 23 LNT N23 HN23 SING N N 24 LNT C24 N23 SING N N 25 LNT C24 C SING N N 26 LNT C24 H24 SING N N 27 LNT C O DOUB N N 28 LNT C OXT SING N N 29 LNT C27 C24 SING N N 30 LNT C27 H27 SING N N 31 LNT OG1 C27 SING N N 32 LNT OG1 HOG1 SING N N 33 LNT C29 C27 SING N N 34 LNT C29 H29 SING N N 35 LNT C29 H29A SING N N 36 LNT C29 H29B SING N N 37 LNT OXT HXT SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LNT SMILES ACDLabs 12.01 "O=C(O)C(NC(O)(O)C(N)CC(C)C)C(O)C" LNT SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](N)C(O)(O)N[C@@H]([C@@H](C)O)C(O)=O" LNT SMILES CACTVS 3.370 "CC(C)C[CH](N)C(O)(O)N[CH]([CH](C)O)C(O)=O" LNT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H]([C@@H](C(=O)O)NC([C@H](CC(C)C)N)(O)O)O" LNT SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)CC(C(NC(C(C)O)C(=O)O)(O)O)N" LNT InChI InChI 1.03 "InChI=1S/C10H22N2O5/c1-5(2)4-7(11)10(16,17)12-8(6(3)13)9(14)15/h5-8,12-13,16-17H,4,11H2,1-3H3,(H,14,15)/t6-,7+,8+/m1/s1" LNT InChIKey InChI 1.03 JUVAHRIWFDXYGV-CSMHCCOUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LNT "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-2-amino-1,1-dihydroxy-4-methylpentyl]-L-threonine" LNT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R)-2-[[(2S)-2-azanyl-1,1-dihydroxy-4-methyl-pentyl]amino]-3-hydroxy-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LNT "Create component" 2007-11-07 RCSB LNT "Other modification" 2010-09-25 RCSB LNT "Modify descriptor" 2011-06-04 RCSB #