data_LNV # _chem_comp.id LNV _chem_comp.name "5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C13 H22 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid; Laninamivir ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-09-01 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.336 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LNV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3TI3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 LNV "5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid" PDB ? 2 LNV Laninamivir PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LNV C2 CAA C 0 1 N N N 29.446 13.207 -22.779 -0.203 -2.156 -0.147 C2 LNV 1 LNV C3 CAB C 0 1 N N N 30.878 13.723 -22.626 -1.424 -1.718 0.124 C3 LNV 2 LNV C4 CAC C 0 1 N N S 31.221 14.531 -21.369 -1.708 -0.275 0.440 C4 LNV 3 LNV C5 CAD C 0 1 N N R 30.019 14.857 -20.440 -0.533 0.591 -0.026 C5 LNV 4 LNV C6 CAE C 0 1 N N R 28.581 14.562 -20.941 0.768 -0.065 0.456 C6 LNV 5 LNV O6 OAF O 0 1 N N N 28.367 13.762 -22.088 0.884 -1.346 -0.170 O6 LNV 6 LNV C1 CAG C 0 1 N N N 29.045 12.568 -24.061 -0.017 -3.589 -0.431 C1 LNV 7 LNV O1B OAH O 0 1 N N N 30.014 11.973 -24.835 1.211 -4.068 -0.711 O1B LNV 8 LNV O1A OAI O 0 1 N N N 27.852 12.496 -24.328 -0.972 -4.341 -0.414 O1A LNV 9 LNV C7 CAJ C 0 1 N N R 27.489 14.428 -19.942 1.962 0.809 0.065 C7 LNV 10 LNV C8 CAK C 0 1 N N R 26.126 14.687 -20.546 3.262 0.092 0.437 C8 LNV 11 LNV C9 CAL C 0 1 N N N 25.006 14.368 -19.585 4.450 1.018 0.168 C9 LNV 12 LNV O9 OAM O 0 1 N N N 24.972 15.189 -18.437 5.668 0.315 0.420 O9 LNV 13 LNV O7 OAW O 0 1 N N N 27.619 13.167 -19.416 1.936 1.049 -1.343 O7 LNV 14 LNV C13 CAX C 0 1 N N N 27.665 13.010 -18.039 2.238 2.397 -1.709 C13 LNV 15 LNV O8 OAY O 0 1 N N N 26.021 15.941 -21.113 3.234 -0.258 1.822 O8 LNV 16 LNV N4 NAZ N 0 1 N N N 32.543 14.365 -20.813 -2.929 0.146 -0.253 N4 LNV 17 LNV C12 CBA C 0 1 N N N 33.307 15.399 -20.170 -4.157 -0.085 0.319 C12 LNV 18 LNV N12 NBB N 0 1 N N N 34.402 15.035 -19.540 -4.236 -0.677 1.477 N12 LNV 19 LNV N13 NBC N 0 1 N N N 32.974 16.684 -20.271 -5.303 0.310 -0.331 N13 LNV 20 LNV C10 CBD C 0 1 N N N 30.832 15.429 -18.086 -1.408 2.865 -0.067 C10 LNV 21 LNV C11 CBE C 0 1 N N N 30.968 16.584 -17.148 -1.529 4.246 0.523 C11 LNV 22 LNV O10 OBF O 0 1 N N N 31.060 14.278 -17.725 -1.992 2.591 -1.094 O10 LNV 23 LNV N5 NBG N 0 1 N N N 30.153 15.730 -19.308 -0.650 1.934 0.547 N5 LNV 24 LNV H3 HAB H 0 1 N N N 31.625 13.524 -23.381 -2.243 -2.421 0.117 H3 LNV 25 LNV H4 HAC H 0 1 N N N 31.412 15.544 -21.752 -1.842 -0.157 1.515 H4 LNV 26 LNV H5 HAD H 0 1 N N N 30.280 13.956 -19.866 -0.531 0.654 -1.115 H5 LNV 27 LNV H6 HAE H 0 1 N N N 28.491 15.581 -21.345 0.739 -0.186 1.538 H6 LNV 28 LNV H7 HAJ H 0 1 N N N 27.571 15.186 -19.149 1.906 1.758 0.597 H7 LNV 29 LNV H8 HAK H 0 1 N N N 26.015 13.982 -21.383 3.363 -0.812 -0.164 H8 LNV 30 LNV H91 HAL H 0 1 N N N 24.054 14.498 -20.121 4.427 1.346 -0.871 H91 LNV 31 LNV H92 HALA H 0 1 N N N 25.133 13.327 -19.252 4.389 1.886 0.825 H92 LNV 32 LNV HO9 HOAM H 0 1 N N N 24.245 14.930 -17.883 6.465 0.843 0.270 HO9 LNV 33 LNV H131 HAX H 0 0 N N N 27.770 11.943 -17.794 3.272 2.621 -1.447 H131 LNV 34 LNV H132 HAXA H 0 0 N N N 28.525 13.565 -17.635 2.100 2.522 -2.783 H132 LNV 35 LNV H133 HAXB H 0 0 N N N 26.736 13.398 -17.595 1.573 3.076 -1.175 H133 LNV 36 LNV HO8 HOAY H 0 1 N N N 25.150 16.053 -21.476 3.145 0.499 2.417 HO8 LNV 37 LNV HN4 HNAZ H 0 1 N N N 32.960 13.459 -20.881 -2.870 0.586 -1.115 HN4 LNV 38 LNV HN12 HNBB H 0 0 N N N 34.904 15.820 -19.178 -5.103 -0.840 1.881 HN12 LNV 39 LNV HN14 HNBC H 0 0 N N N 33.560 17.386 -19.865 -5.244 0.751 -1.193 HN14 LNV 40 LNV HN13 HNBA H 0 0 N N N 32.138 16.948 -20.753 -6.170 0.147 0.073 HN13 LNV 41 LNV H111 HBE H 0 0 N N N 31.285 16.219 -16.160 -2.177 4.855 -0.108 H111 LNV 42 LNV H112 HBEA H 0 0 N N N 31.719 17.286 -17.538 -1.955 4.178 1.523 H112 LNV 43 LNV H113 HBEB H 0 0 N N N 29.999 17.097 -17.055 -0.542 4.705 0.579 H113 LNV 44 LNV HN5 HNBG H 0 1 N N N 29.732 16.634 -19.381 -0.183 2.154 1.368 HN5 LNV 45 LNV HOB1 HOAH H 0 0 N N N 29.605 11.526 -25.567 1.283 -5.015 -0.890 HOB1 LNV 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LNV C2 C3 DOUB N N 1 LNV C2 O6 SING N N 2 LNV C2 C1 SING N N 3 LNV C3 C4 SING N N 4 LNV C4 C5 SING N N 5 LNV C4 N4 SING N N 6 LNV C5 C6 SING N N 7 LNV C5 N5 SING N N 8 LNV C6 O6 SING N N 9 LNV C6 C7 SING N N 10 LNV C1 O1B SING N N 11 LNV C1 O1A DOUB N N 12 LNV C7 C8 SING N N 13 LNV C7 O7 SING N N 14 LNV C8 C9 SING N N 15 LNV C8 O8 SING N N 16 LNV C9 O9 SING N N 17 LNV O7 C13 SING N N 18 LNV N4 C12 SING N N 19 LNV C12 N12 DOUB N N 20 LNV C12 N13 SING N N 21 LNV C10 C11 SING N N 22 LNV C10 O10 DOUB N N 23 LNV C10 N5 SING N N 24 LNV C3 H3 SING N N 25 LNV C4 H4 SING N N 26 LNV C5 H5 SING N N 27 LNV C6 H6 SING N N 28 LNV C7 H7 SING N N 29 LNV C8 H8 SING N N 30 LNV C9 H91 SING N N 31 LNV C9 H92 SING N N 32 LNV O9 HO9 SING N N 33 LNV C13 H131 SING N N 34 LNV C13 H132 SING N N 35 LNV C13 H133 SING N N 36 LNV O8 HO8 SING N N 37 LNV N4 HN4 SING N N 38 LNV N12 HN12 SING N N 39 LNV N13 HN14 SING N N 40 LNV N13 HN13 SING N N 41 LNV C11 H111 SING N N 42 LNV C11 H112 SING N N 43 LNV C11 H113 SING N N 44 LNV N5 HN5 SING N N 45 LNV O1B HOB1 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LNV SMILES ACDLabs 12.01 "O=C(O)C=1OC(C(OC)C(O)CO)C(NC(=O)C)C(C=1)NC(=[N@H])N" LNV InChI InChI 1.03 "InChI=1S/C13H22N4O7/c1-5(19)16-9-6(17-13(14)15)3-8(12(21)22)24-11(9)10(23-2)7(20)4-18/h3,6-7,9-11,18,20H,4H2,1-2H3,(H,16,19)(H,21,22)(H4,14,15,17)/t6-,7+,9+,10+,11+/m0/s1" LNV InChIKey InChI 1.03 QNRRHYPPQFELSF-CNYIRLTGSA-N LNV SMILES_CANONICAL CACTVS 3.370 "CO[C@H]([C@H](O)CO)[C@@H]1OC(=C[C@H](NC(N)=N)[C@H]1NC(C)=O)C(O)=O" LNV SMILES CACTVS 3.370 "CO[CH]([CH](O)CO)[CH]1OC(=C[CH](NC(N)=N)[CH]1NC(C)=O)C(O)=O" LNV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[H]/N=C(\N)/N[C@H]1C=C(O[C@H]([C@@H]1NC(=O)C)[C@@H]([C@@H](CO)O)OC)C(=O)O" LNV SMILES "OpenEye OEToolkits" 1.7.2 "CC(=O)NC1C(C=C(OC1C(C(CO)O)OC)C(=O)O)NC(=N)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LNV "SYSTEMATIC NAME" ACDLabs 12.01 "5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-D-glycero-D-galacto-non-2-enonic acid" LNV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 ;(2R,3R,4S)-3-acetamido-4-carbamimidamido-2-[(1R,2R)-1-methoxy-2,3-bis(oxidanyl)propyl]-3,4-dihydro-2H-pyran-6-carboxyli c acid ; # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support LNV "CARBOHYDRATE ISOMER" D PDB ? LNV "CARBOHYDRATE RING" dihydropyran PDB ? LNV "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LNV "Create component" 2011-09-01 PDBJ LNV "Other modification" 2020-07-03 RCSB LNV "Modify name" 2020-07-17 RCSB LNV "Modify synonyms" 2020-07-17 RCSB LNV "Modify internal type" 2020-07-17 RCSB LNV "Modify linking type" 2020-07-17 RCSB LNV "Modify atom id" 2020-07-17 RCSB LNV "Modify component atom id" 2020-07-17 RCSB ##