data_LOY # _chem_comp.id LOY _chem_comp.name "5'-deoxy-5'-[({(2R)-2-({2-[(N-{(2R)-4-[(dioxo-lambda~5~-phosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-beta-alanyl)amino]ethyl}sulfanyl)-2-[(2R)-pyrrolidin-2-yl]ethyl}sulfonyl)amino]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H44 N9 O11 P S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-07 _chem_comp.pdbx_modified_date 2020-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 765.796 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LOY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6O6E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LOY N N1 N 0 1 N N N -85.625 27.000 -3.680 -4.053 5.305 2.036 N LOY 1 LOY S S1 S 0 1 N N N -82.051 29.372 -1.238 -3.370 2.808 -1.757 S LOY 2 LOY C1 C1 C 0 1 N N N -83.889 26.646 -5.200 -2.255 6.824 1.433 C1 LOY 3 LOY N1 N2 N 0 1 N N N -81.220 30.048 -2.409 -3.882 1.238 -1.624 N1 LOY 4 LOY O1 O1 O 0 1 N N N -82.703 30.308 -0.373 -4.424 3.463 -2.449 O1 LOY 5 LOY C2 C2 C 0 1 N N N -85.201 26.663 -5.999 -3.102 7.440 2.578 C2 LOY 6 LOY N2 N3 N 0 1 Y N N -80.889 30.802 -7.130 -4.927 -3.520 0.412 N2 LOY 7 LOY O2 O2 O 0 1 N N N -80.317 31.038 -4.900 -4.722 -1.415 -0.700 O2 LOY 8 LOY C3 C3 C 0 1 N N R -84.224 27.308 -3.864 -2.718 5.352 1.411 C3 LOY 9 LOY N3 N4 N 0 1 Y N N -82.280 29.323 -8.059 -3.925 -4.122 2.255 N3 LOY 10 LOY O3 O3 O 0 1 N N N -79.853 34.013 -5.785 -7.793 -3.125 -1.132 O3 LOY 11 LOY C4 C4 C 0 1 N N R -83.370 27.153 -2.612 -2.803 4.854 -0.033 C4 LOY 12 LOY C5 C5 C 0 1 N N N -83.339 28.576 -1.997 -3.270 3.398 -0.044 C5 LOY 13 LOY C6 C6 C 0 1 N N N -81.877 31.113 -3.097 -5.214 0.945 -1.089 C6 LOY 14 LOY N6 N5 N 0 1 Y N N -79.542 31.191 -9.103 -5.636 -5.821 -0.240 N6 LOY 15 LOY N7 N6 N 0 1 N N N -79.672 23.897 -1.948 2.081 2.904 0.465 N7 LOY 16 LOY C8 C7 C 0 1 N N R -80.199 31.672 -6.168 -5.437 -2.670 -0.667 C8 LOY 17 LOY O10 O4 O 0 1 N N N -68.621 19.425 0.030 9.675 -2.942 -3.110 O10 LOY 18 LOY P P1 P 0 1 N N N -69.136 19.757 -1.354 8.155 -3.139 -2.329 P LOY 19 LOY O9 O5 O 0 1 N N N -68.973 21.169 -1.767 6.763 -3.556 -3.248 O9 LOY 20 LOY O8 O6 O 0 1 N N N -70.736 19.540 -1.386 8.039 -2.938 -0.776 O8 LOY 21 LOY C26 C8 C 0 1 N N N -71.309 19.829 -2.665 8.401 -1.633 -0.252 C26 LOY 22 LOY C23 C9 C 0 1 N N N -72.790 19.550 -2.678 8.226 -1.628 1.268 C23 LOY 23 LOY C24 C10 C 0 1 N N N -73.037 18.046 -2.587 6.766 -1.930 1.614 C24 LOY 24 LOY C25 C11 C 0 1 N N N -73.314 20.159 -3.983 9.128 -2.695 1.890 C25 LOY 25 LOY C22 C12 C 0 1 N N R -73.380 20.208 -1.443 8.607 -0.253 1.821 C22 LOY 26 LOY O7 O7 O 0 1 N N N -72.857 21.515 -1.493 10.001 -0.023 1.606 O7 LOY 27 LOY C21 C13 C 0 1 N N N -74.883 20.214 -1.414 7.807 0.812 1.115 C21 LOY 28 LOY O6 O8 O 0 1 N N N -75.472 19.214 -1.065 8.354 1.566 0.339 O6 LOY 29 LOY N8 N7 N 0 1 N N N -75.550 21.313 -1.760 6.484 0.925 1.346 N8 LOY 30 LOY C20 C14 C 0 1 N N N -76.996 21.365 -1.666 5.685 1.879 0.573 C20 LOY 31 LOY C19 C15 C 0 1 N N N -77.535 22.753 -1.874 4.226 1.809 1.029 C19 LOY 32 LOY C18 C16 C 0 1 N N N -79.031 22.732 -1.981 3.404 2.791 0.234 C18 LOY 33 LOY O5 O9 O 0 1 N N N -79.580 21.675 -2.097 3.933 3.478 -0.614 O5 LOY 34 LOY C17 C17 C 0 1 N N N -81.082 24.009 -2.127 1.282 3.858 -0.308 C17 LOY 35 LOY C16 C18 C 0 1 N N N -81.633 25.335 -1.621 -0.177 3.789 0.148 C16 LOY 36 LOY S1 S2 S 0 1 N N N -81.811 26.436 -3.014 -1.167 4.970 -0.809 S1 LOY 37 LOY O O10 O 0 1 N N N -81.118 28.591 -0.464 -2.072 2.706 -2.326 O LOY 38 LOY C7 C19 C 0 1 N N R -80.949 31.891 -3.978 -5.586 -0.503 -1.412 C7 LOY 39 LOY C10 C20 C 0 1 N N S -81.743 32.855 -4.820 -7.007 -0.822 -0.897 C10 LOY 40 LOY O4 O11 O 0 1 N N N -82.027 34.059 -4.116 -7.958 -0.722 -1.959 O4 LOY 41 LOY C9 C21 C 0 1 N N R -80.840 33.021 -6.036 -6.907 -2.280 -0.396 C9 LOY 42 LOY C15 C22 C 0 1 Y N N -80.511 30.625 -8.382 -5.064 -4.882 0.506 C15 LOY 43 LOY C12 C23 C 0 1 Y N N -81.391 29.709 -8.990 -4.415 -5.255 1.696 C12 LOY 44 LOY C11 C24 C 0 1 Y N N -81.965 30.016 -6.909 -4.225 -3.103 1.503 C11 LOY 45 LOY C14 C25 C 0 1 Y N N -79.404 30.825 -10.429 -5.598 -7.085 0.128 C14 LOY 46 LOY N5 N8 N 0 1 Y N N -80.217 29.955 -11.062 -5.001 -7.483 1.236 N5 LOY 47 LOY C13 C26 C 0 1 Y N N -81.226 29.376 -10.343 -4.401 -6.616 2.045 C13 LOY 48 LOY N4 N9 N 0 1 N N N -82.066 28.479 -10.899 -3.778 -7.043 3.204 N4 LOY 49 LOY C27 C27 C 0 1 N N N -86.282 27.035 -4.999 -4.442 6.679 2.420 C27 LOY 50 LOY H1 H1 H 0 1 N N N -86.044 27.677 -3.075 -4.055 4.691 2.838 H1 LOY 51 LOY H3 H3 H 0 1 N N N -83.546 25.613 -5.043 -2.476 7.312 0.484 H3 LOY 52 LOY H4 H4 H 0 1 N N N -83.109 27.215 -5.727 -1.191 6.889 1.660 H4 LOY 53 LOY H5 H5 H 0 1 N N N -80.999 29.339 -3.079 -3.300 0.513 -1.901 H5 LOY 54 LOY H6 H6 H 0 1 N N N -85.150 27.410 -6.805 -2.651 7.238 3.549 H6 LOY 55 LOY H7 H7 H 0 1 N N N -85.401 25.671 -6.430 -3.241 8.510 2.428 H7 LOY 56 LOY H8 H8 H 0 1 N N N -84.194 28.386 -4.081 -2.021 4.735 1.978 H8 LOY 57 LOY H9 H9 H 0 1 N N N -80.271 34.862 -5.703 -8.730 -2.924 -0.998 H9 LOY 58 LOY H10 H10 H 0 1 N N N -83.865 26.466 -1.910 -3.512 5.468 -0.588 H10 LOY 59 LOY H11 H11 H 0 1 N N N -83.623 29.241 -2.826 -4.253 3.328 0.422 H11 LOY 60 LOY H12 H12 H 0 1 N N N -84.140 28.568 -1.243 -2.561 2.784 0.511 H12 LOY 61 LOY H13 H13 H 0 1 N N N -82.312 31.797 -2.353 -5.211 1.087 -0.008 H13 LOY 62 LOY H14 H14 H 0 1 N N N -82.679 30.689 -3.719 -5.943 1.617 -1.541 H14 LOY 63 LOY H15 H15 H 0 1 N N N -79.142 24.730 -1.791 1.658 2.355 1.143 H15 LOY 64 LOY H16 H16 H 0 1 N N N -79.142 31.788 -6.451 -5.349 -3.181 -1.626 H16 LOY 65 LOY H19 H19 H 0 1 N N N -70.820 19.203 -3.426 9.441 -1.418 -0.498 H19 LOY 66 LOY H20 H20 H 0 1 N N N -71.142 20.890 -2.901 7.758 -0.873 -0.694 H20 LOY 67 LOY H21 H21 H 0 1 N N N -72.642 17.666 -1.633 6.523 -2.948 1.309 H21 LOY 68 LOY H22 H22 H 0 1 N N N -74.118 17.848 -2.640 6.619 -1.827 2.689 H22 LOY 69 LOY H23 H23 H 0 1 N N N -72.530 17.540 -3.422 6.116 -1.229 1.090 H23 LOY 70 LOY H24 H24 H 0 1 N N N -74.398 19.990 -4.058 10.172 -2.434 1.717 H24 LOY 71 LOY H25 H25 H 0 1 N N N -73.110 21.240 -3.991 8.940 -2.751 2.962 H25 LOY 72 LOY H26 H26 H 0 1 N N N -72.810 19.684 -4.838 8.916 -3.662 1.433 H26 LOY 73 LOY H27 H27 H 0 1 N N N -73.008 19.683 -0.551 8.394 -0.219 2.889 H27 LOY 74 LOY H28 H28 H 0 1 N N N -73.175 22.012 -0.749 10.263 -0.039 0.675 H28 LOY 75 LOY H29 H29 H 0 1 N N N -75.047 22.113 -2.089 6.062 0.375 2.024 H29 LOY 76 LOY H30 H30 H 0 1 N N N -77.298 21.015 -0.668 6.068 2.887 0.733 H30 LOY 77 LOY H31 H31 H 0 1 N N N -77.424 20.702 -2.432 5.747 1.630 -0.486 H31 LOY 78 LOY H32 H32 H 0 1 N N N -77.113 23.169 -2.801 3.843 0.801 0.869 H32 LOY 79 LOY H33 H33 H 0 1 N N N -77.243 23.385 -1.022 4.165 2.058 2.089 H33 LOY 80 LOY H34 H34 H 0 1 N N N -81.309 23.919 -3.200 1.665 4.866 -0.148 H34 LOY 81 LOY H35 H35 H 0 1 N N N -81.573 23.191 -1.579 1.344 3.610 -1.367 H35 LOY 82 LOY H36 H36 H 0 1 N N N -80.938 25.771 -0.888 -0.560 2.781 -0.011 H36 LOY 83 LOY H37 H37 H 0 1 N N N -82.612 25.174 -1.147 -0.239 4.037 1.208 H37 LOY 84 LOY H38 H38 H 0 1 N N N -80.217 32.439 -3.367 -5.521 -0.680 -2.486 H38 LOY 85 LOY H39 H39 H 0 1 N N N -82.678 32.370 -5.136 -7.276 -0.152 -0.080 H39 LOY 86 LOY H40 H40 H 0 1 N N N -82.592 33.868 -3.377 -8.868 -0.911 -1.691 H40 LOY 87 LOY H41 H41 H 0 1 N N N -81.439 33.256 -6.928 -7.126 -2.335 0.671 H41 LOY 88 LOY H42 H42 H 0 1 N N N -82.498 29.941 -5.973 -3.953 -2.079 1.711 H42 LOY 89 LOY H43 H43 H 0 1 N N N -78.594 31.263 -10.993 -6.074 -7.823 -0.501 H43 LOY 90 LOY H44 H44 H 0 1 N N N -81.819 28.340 -11.858 -3.775 -7.985 3.434 H44 LOY 91 LOY H45 H45 H 0 1 N N N -81.999 27.610 -10.408 -3.344 -6.400 3.786 H45 LOY 92 LOY H46 H46 H 0 1 N N N -86.670 28.043 -5.209 -5.047 7.134 1.636 H46 LOY 93 LOY H47 H47 H 0 1 N N N -87.108 26.309 -5.037 -4.986 6.669 3.364 H47 LOY 94 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LOY N5 C14 DOUB Y N 1 LOY N5 C13 SING Y N 2 LOY N4 C13 SING N N 3 LOY C14 N6 SING Y N 4 LOY C13 C12 DOUB Y N 5 LOY N6 C15 DOUB Y N 6 LOY C12 C15 SING Y N 7 LOY C12 N3 SING Y N 8 LOY C15 N2 SING Y N 9 LOY N3 C11 DOUB Y N 10 LOY N2 C11 SING Y N 11 LOY N2 C8 SING N N 12 LOY C8 C9 SING N N 13 LOY C8 O2 SING N N 14 LOY C9 O3 SING N N 15 LOY C9 C10 SING N N 16 LOY C2 C1 SING N N 17 LOY C2 C27 SING N N 18 LOY C1 C3 SING N N 19 LOY C27 N SING N N 20 LOY O2 C7 SING N N 21 LOY C10 O4 SING N N 22 LOY C10 C7 SING N N 23 LOY C25 C23 SING N N 24 LOY C7 C6 SING N N 25 LOY C3 N SING N N 26 LOY C3 C4 SING N N 27 LOY C6 N1 SING N N 28 LOY S1 C4 SING N N 29 LOY S1 C16 SING N N 30 LOY C23 C26 SING N N 31 LOY C23 C24 SING N N 32 LOY C23 C22 SING N N 33 LOY C26 O8 SING N N 34 LOY C4 C5 SING N N 35 LOY N1 S SING N N 36 LOY C17 N7 SING N N 37 LOY C17 C16 SING N N 38 LOY O5 C18 DOUB N N 39 LOY C5 S SING N N 40 LOY C18 N7 SING N N 41 LOY C18 C19 SING N N 42 LOY C19 C20 SING N N 43 LOY O9 P DOUB N N 44 LOY N8 C20 SING N N 45 LOY N8 C21 SING N N 46 LOY O7 C22 SING N N 47 LOY C22 C21 SING N N 48 LOY C21 O6 DOUB N N 49 LOY O8 P SING N N 50 LOY P O10 DOUB N N 51 LOY S O DOUB N N 52 LOY S O1 DOUB N N 53 LOY N H1 SING N N 54 LOY C1 H3 SING N N 55 LOY C1 H4 SING N N 56 LOY N1 H5 SING N N 57 LOY C2 H6 SING N N 58 LOY C2 H7 SING N N 59 LOY C3 H8 SING N N 60 LOY O3 H9 SING N N 61 LOY C4 H10 SING N N 62 LOY C5 H11 SING N N 63 LOY C5 H12 SING N N 64 LOY C6 H13 SING N N 65 LOY C6 H14 SING N N 66 LOY N7 H15 SING N N 67 LOY C8 H16 SING N N 68 LOY C26 H19 SING N N 69 LOY C26 H20 SING N N 70 LOY C24 H21 SING N N 71 LOY C24 H22 SING N N 72 LOY C24 H23 SING N N 73 LOY C25 H24 SING N N 74 LOY C25 H25 SING N N 75 LOY C25 H26 SING N N 76 LOY C22 H27 SING N N 77 LOY O7 H28 SING N N 78 LOY N8 H29 SING N N 79 LOY C20 H30 SING N N 80 LOY C20 H31 SING N N 81 LOY C19 H32 SING N N 82 LOY C19 H33 SING N N 83 LOY C17 H34 SING N N 84 LOY C17 H35 SING N N 85 LOY C16 H36 SING N N 86 LOY C16 H37 SING N N 87 LOY C7 H38 SING N N 88 LOY C10 H39 SING N N 89 LOY O4 H40 SING N N 90 LOY C9 H41 SING N N 91 LOY C11 H42 SING N N 92 LOY C14 H43 SING N N 93 LOY N4 H44 SING N N 94 LOY N4 H45 SING N N 95 LOY C27 H46 SING N N 96 LOY C27 H47 SING N N 97 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LOY SMILES ACDLabs 12.01 "N1C(CCC1)C(CS(=O)(=O)NCC4OC(n2cnc3c2ncnc3N)C(O)C4O)SCCNC(CCNC(C(C(COP(=O)=O)(C)C)O)=O)=O" LOY InChI InChI 1.03 "InChI=1S/C27H44N9O11PS2/c1-27(2,12-46-48(42)43)22(40)25(41)31-7-5-18(37)30-8-9-49-17(15-4-3-6-29-15)11-50(44,45)35-10-16-20(38)21(39)26(47-16)36-14-34-19-23(28)32-13-33-24(19)36/h13-17,20-22,26,29,35,38-40H,3-12H2,1-2H3,(H,30,37)(H,31,41)(H2,28,32,33)/t15-,16-,17+,20-,21-,22+,26-/m1/s1" LOY InChIKey InChI 1.03 UUZQPBPCNSKBOR-NZQKSRFZSA-N LOY SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](=O)=O)[C@@H](O)C(=O)NCCC(=O)NCCS[C@@H](C[S](=O)(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)[C@H]4CCCN4" LOY SMILES CACTVS 3.385 "CC(C)(CO[P](=O)=O)[CH](O)C(=O)NCCC(=O)NCCS[CH](C[S](=O)(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)[CH]4CCCN4" LOY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)=O)[C@H](C(=O)NCCC(=O)NCCS[C@@H](CS(=O)(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)[C@H]4CCCN4)O" LOY SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)=O)C(C(=O)NCCC(=O)NCCSC(CS(=O)(=O)NCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)C4CCCN4)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LOY "SYSTEMATIC NAME" ACDLabs 12.01 "5'-deoxy-5'-[({(2R)-2-({2-[(N-{(2R)-4-[(dioxo-lambda~5~-phosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-beta-alanyl)amino]ethyl}sulfanyl)-2-[(2R)-pyrrolidin-2-yl]ethyl}sulfonyl)amino]adenosine" LOY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-~{N}-[3-[2-[(1~{R})-2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfamoyl]-1-[(2~{R})-pyrrolidin-2-yl]ethyl]sulfanylethylamino]-3-oxidanylidene-propyl]-3,3-dimethyl-2-oxidanyl-4-phosphooxy-butanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LOY "Create component" 2019-03-07 RCSB LOY "Initial release" 2020-04-08 RCSB ##