data_LP0 # _chem_comp.id LP0 _chem_comp.name "(7Z)-7-(2-amino-1,3-thiazol-4-yl)-1,1,3-trihydroxy-10,10-dimethyl-1,6-dioxo-2,9-dioxa-5,8-diaza-1lambda~5~-phospha-3-boraundec-7-en-11-oic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 B N4 O9 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.105 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LP0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6PWL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LP0 O5 O1 O 0 1 N N N N N N 15.639 -11.897 43.030 -4.399 2.035 -1.431 O5 LP0 1 LP0 P1 P1 P 0 1 N N N N N N 16.882 -12.387 42.333 -5.123 1.135 -0.309 P1 LP0 2 LP0 O2 O2 O 0 1 N N N N N N 17.441 -13.519 43.167 -6.451 1.884 0.206 O2 LP0 3 LP0 O3 O3 O 0 1 N N N N N N 17.956 -11.330 42.194 -5.490 -0.176 -0.890 O3 LP0 4 LP0 O20 O4 O 0 1 N N N N N N 16.542 -12.907 40.861 -4.119 0.911 0.929 O20 LP0 5 LP0 B1 B1 B 0 1 N N N N N N 16.962 -12.194 39.677 -2.909 0.254 0.581 B1 LP0 6 LP0 O21 O5 O 0 1 N N N N N N 16.798 -10.679 39.724 -2.677 -0.141 -0.763 O21 LP0 7 LP0 C1 C1 C 0 1 N N N N N N 18.475 -12.584 39.270 -1.828 -0.036 1.682 C1 LP0 8 LP0 N2 N1 N 0 1 N N N N N N 19.391 -11.494 39.563 -0.682 -0.717 1.074 N2 LP0 9 LP0 C3 C2 C 0 1 N N N N N N 20.417 -11.183 38.772 0.387 -0.005 0.668 C3 LP0 10 LP0 O4 O6 O 0 1 N N N N N N 20.724 -11.758 37.730 0.363 1.209 0.718 O4 LP0 11 LP0 C5 C3 C 0 1 N N N N N N 21.263 -10.067 39.175 1.593 -0.702 0.161 C5 LP0 12 LP0 N6 N2 N 0 1 N N N N N N 21.883 -10.128 40.280 2.664 -0.021 -0.132 N6 LP0 13 LP0 O7 O7 O 0 1 N N N N N N 21.748 -11.132 41.042 2.716 1.369 0.137 O7 LP0 14 LP0 C8 C4 C 0 1 N N N N N N 21.811 -11.051 42.471 3.949 1.987 -0.235 C8 LP0 15 LP0 C11 C5 C 0 1 N N N N N N 20.718 -10.123 42.952 3.893 3.457 0.095 C11 LP0 16 LP0 O13 O8 O 0 1 N N N N N N 19.935 -10.484 43.863 4.948 4.244 -0.169 O13 LP0 17 LP0 O12 O9 O 0 1 N N N N N N 20.640 -8.997 42.416 2.899 3.926 0.598 O12 LP0 18 LP0 C10 C6 C 0 1 N N N N N N 21.609 -12.453 43.055 5.099 1.335 0.535 C10 LP0 19 LP0 C9 C7 C 0 1 N N N N N N 23.164 -10.476 42.892 4.175 1.811 -1.738 C9 LP0 20 LP0 C14 C8 C 0 1 Y N N N N N 21.411 -8.940 38.240 1.580 -2.170 -0.013 C14 LP0 21 LP0 N18 N3 N 0 1 Y N N N N N 20.947 -8.954 36.930 0.547 -2.925 0.363 N18 LP0 22 LP0 C17 C9 C 0 1 Y N N N N N 21.255 -7.788 36.308 0.647 -4.201 0.156 C17 LP0 23 LP0 N19 N4 N 0 1 N N N N N N 20.898 -7.484 34.964 -0.318 -5.140 0.476 N19 LP0 24 LP0 S16 S1 S 0 1 Y N N N N N 22.111 -6.651 37.273 2.199 -4.554 -0.596 S16 LP0 25 LP0 C15 C10 C 0 1 Y N N N N N 22.086 -7.757 38.593 2.609 -2.841 -0.567 C15 LP0 26 LP0 H1 H1 H 0 1 N N N N N N 15.748 -10.984 43.268 -4.130 2.911 -1.119 H1 LP0 27 LP0 H2 H2 H 0 1 N N N N N N 18.335 -13.317 43.417 -7.102 2.052 -0.489 H2 LP0 28 LP0 H3 H3 H 0 1 N N N N N N 17.121 -10.351 40.555 -1.827 -0.580 -0.903 H3 LP0 29 LP0 H4 H4 H 0 1 N N N N N N 18.512 -12.805 38.193 -1.499 0.904 2.125 H4 LP0 30 LP0 H5 H5 H 0 1 N N N N N N 18.782 -13.474 39.838 -2.259 -0.671 2.456 H5 LP0 31 LP0 H6 H6 H 0 1 N N N N N N 19.245 -10.955 40.393 -0.694 -1.681 0.963 H6 LP0 32 LP0 H7 H7 H 0 1 N N N N N N 19.320 -9.784 44.048 4.865 5.180 0.061 H7 LP0 33 LP0 H8 H8 H 0 1 N N N N N N 21.655 -12.404 44.153 5.140 0.272 0.296 H8 LP0 34 LP0 H9 H9 H 0 1 N N N N N N 20.627 -12.840 42.747 6.040 1.807 0.251 H9 LP0 35 LP0 H10 H10 H 0 1 N N N N N N 22.400 -13.122 42.684 4.938 1.461 1.605 H10 LP0 36 LP0 H11 H11 H 0 1 N N N N N N 23.211 -10.414 43.989 3.356 2.275 -2.286 H11 LP0 37 LP0 H12 H12 H 0 1 N N N N N N 23.970 -11.130 42.527 5.116 2.283 -2.021 H12 LP0 38 LP0 H13 H13 H 0 1 N N N N N N 23.284 -9.470 42.463 4.216 0.748 -1.976 H13 LP0 39 LP0 H14 H14 H 0 1 N N N N N N 20.397 -8.254 34.569 -1.150 -4.860 0.890 H14 LP0 40 LP0 H15 H15 H 0 1 N N N N N N 20.321 -6.668 34.949 -0.163 -6.079 0.287 H15 LP0 41 LP0 H16 H16 H 0 1 N N N N N N 22.528 -7.568 39.560 3.525 -2.403 -0.934 H16 LP0 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LP0 N19 C17 SING N N 1 LP0 C17 N18 DOUB Y N 2 LP0 C17 S16 SING Y N 3 LP0 N18 C14 SING Y N 4 LP0 S16 C15 SING Y N 5 LP0 O4 C3 DOUB N N 6 LP0 C14 C15 DOUB Y N 7 LP0 C14 C5 SING N N 8 LP0 C3 C5 SING N N 9 LP0 C3 N2 SING N N 10 LP0 C5 N6 DOUB N Z 11 LP0 C1 N2 SING N N 12 LP0 C1 B1 SING N N 13 LP0 B1 O21 SING N N 14 LP0 B1 O20 SING N N 15 LP0 N6 O7 SING N N 16 LP0 O20 P1 SING N N 17 LP0 O7 C8 SING N N 18 LP0 O3 P1 DOUB N N 19 LP0 P1 O5 SING N N 20 LP0 P1 O2 SING N N 21 LP0 O12 C11 DOUB N N 22 LP0 C8 C9 SING N N 23 LP0 C8 C11 SING N N 24 LP0 C8 C10 SING N N 25 LP0 C11 O13 SING N N 26 LP0 O5 H1 SING N N 27 LP0 O2 H2 SING N N 28 LP0 O21 H3 SING N N 29 LP0 C1 H4 SING N N 30 LP0 C1 H5 SING N N 31 LP0 N2 H6 SING N N 32 LP0 O13 H7 SING N N 33 LP0 C10 H8 SING N N 34 LP0 C10 H9 SING N N 35 LP0 C10 H10 SING N N 36 LP0 C9 H11 SING N N 37 LP0 C9 H12 SING N N 38 LP0 C9 H13 SING N N 39 LP0 N19 H14 SING N N 40 LP0 N19 H15 SING N N 41 LP0 C15 H16 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LP0 SMILES ACDLabs 12.01 "OP(O)(=O)OB(O)CNC(\C(=N/OC(C)(C(O)=O)C)c1csc(n1)N)=O" LP0 InChI InChI 1.03 "InChI=1S/C10H16BN4O9PS/c1-10(2,8(17)18)23-15-6(5-3-26-9(12)14-5)7(16)13-4-11(19)24-25(20,21)22/h3,19H,4H2,1-2H3,(H2,12,14)(H,13,16)(H,17,18)(H2,20,21,22)/b15-6-" LP0 InChIKey InChI 1.03 NLJWLRKAKQZXHE-UUASQNMZSA-N LP0 SMILES_CANONICAL CACTVS 3.385 "CC(C)(O\N=C(/C(=O)NCB(O)O[P](O)(O)=O)c1csc(N)n1)C(O)=O" LP0 SMILES CACTVS 3.385 "CC(C)(ON=C(C(=O)NCB(O)O[P](O)(O)=O)c1csc(N)n1)C(O)=O" LP0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B(CNC(=O)/C(=N\OC(C)(C)C(=O)O)/c1csc(n1)N)(O)OP(=O)(O)O" LP0 SMILES "OpenEye OEToolkits" 2.0.7 "B(CNC(=O)C(=NOC(C)(C)C(=O)O)c1csc(n1)N)(O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LP0 "SYSTEMATIC NAME" ACDLabs 12.01 "(7Z)-7-(2-amino-1,3-thiazol-4-yl)-1,1,3-trihydroxy-10,10-dimethyl-1,6-dioxo-2,9-dioxa-5,8-diaza-1lambda~5~-phospha-3-boraundec-7-en-11-oic acid" LP0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(~{Z})-[1-(2-azanyl-1,3-thiazol-4-yl)-2-oxidanylidene-2-[[oxidanyl(phosphonooxy)boranyl]methylamino]ethylidene]amino]oxy-2-methyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LP0 "Create component" 2019-07-25 RCSB LP0 "Initial release" 2020-10-21 RCSB LP0 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id LP0 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #