data_LP6 # _chem_comp.id LP6 _chem_comp.name 6-piperidin-1-yl-L-norleucine _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H22 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-01-06 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 214.305 _chem_comp.one_letter_code K _chem_comp.three_letter_code LP6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2W7Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LP6 N N N 0 1 N N N Y Y N 31.602 0.592 55.240 3.649 1.761 -0.042 N LP6 1 LP6 CA CA C 0 1 N N S Y N N 31.101 1.904 55.621 3.457 0.377 0.414 CA LP6 2 LP6 CB CB C 0 1 N N N N N N 31.340 2.080 57.125 2.147 -0.170 -0.157 CB LP6 3 LP6 CG CG C 0 1 N N N N N N 30.346 1.286 57.965 0.969 0.615 0.424 CG LP6 4 LP6 CD CD C 0 1 N N N N N N 30.260 1.820 59.395 -0.340 0.067 -0.147 CD LP6 5 LP6 CE CE C 0 1 N N N N N N 29.372 3.075 59.481 -1.518 0.852 0.435 CE LP6 6 LP6 NZ NZ N 0 1 N N N N N N 28.979 3.440 60.876 -2.775 0.326 -0.114 NZ LP6 7 LP6 CM CM C 0 1 N N N N N N 30.092 3.921 61.749 -3.905 1.198 0.232 CM LP6 8 LP6 C C C 0 1 N N N Y N Y 31.827 3.027 54.882 4.606 -0.473 -0.062 C LP6 9 LP6 C13 C13 C 0 1 N N N N N N 29.489 4.560 62.997 -5.169 0.701 -0.474 C13 LP6 10 LP6 O O O 0 1 N N N Y N Y 32.995 2.881 54.476 5.290 -0.102 -0.987 O LP6 11 LP6 CCA CCA C 0 1 N N N N N N 28.630 3.559 63.772 -5.459 -0.738 -0.039 CCA LP6 12 LP6 CCC CCC C 0 1 N N N N N N 27.533 3.022 62.846 -4.247 -1.616 -0.366 CCC LP6 13 LP6 CCD CCD C 0 1 N N N N N N 28.111 2.430 61.549 -3.010 -1.052 0.337 CCD LP6 14 LP6 OXT OXT O 0 1 N Y N Y N Y 31.126 4.149 54.731 4.871 -1.642 0.542 OXT LP6 15 LP6 H HN1 H 0 1 N N N Y Y N 31.717 0.554 54.247 4.474 2.167 0.373 HN1 LP6 16 LP6 H2 HN2 H 0 1 N Y N Y Y N 32.483 0.430 55.684 3.690 1.807 -1.049 HN2 LP6 17 LP6 HA HA H 0 1 N N N Y N N 30.033 1.961 55.363 3.415 0.356 1.503 HA LP6 18 LP6 HB1C HB1C H 0 0 N N N N N N 32.356 1.730 57.361 2.152 -0.067 -1.242 HB1C LP6 19 LP6 HB2C HB2C H 0 0 N N N N N N 31.211 3.146 57.366 2.048 -1.223 0.107 HB2C LP6 20 LP6 HG1C HG1C H 0 0 N N N N N N 29.352 1.360 57.500 0.964 0.511 1.509 HG1C LP6 21 LP6 HG2C HG2C H 0 0 N N N N N N 30.689 0.242 58.008 1.069 1.668 0.160 HG2C LP6 22 LP6 HD1C HD1C H 0 0 N N N N N N 29.831 1.038 60.039 -0.335 0.170 -1.232 HD1C LP6 23 LP6 HD2C HD2C H 0 0 N N N N N N 31.274 2.093 59.722 -0.440 -0.986 0.118 HD2C LP6 24 LP6 HE1C HE1C H 0 0 N N N N N N 29.932 3.919 59.052 -1.523 0.749 1.520 HE1C LP6 25 LP6 HE2C HE2C H 0 0 N N N N N N 28.445 2.854 58.931 -1.418 1.905 0.170 HE2C LP6 26 LP6 HM1C HM1C H 0 0 N N N N N N 30.732 3.074 62.037 -4.061 1.180 1.310 HM1C LP6 27 LP6 HM2C HM2C H 0 0 N N N N N N 30.703 4.658 61.207 -3.688 2.217 -0.087 HM2C LP6 28 LP6 HCD1 HCD1 H 0 0 N N N N N N 27.287 2.151 60.876 -2.143 -1.666 0.095 HCD1 LP6 29 LP6 HCD2 HCD2 H 0 0 N N N N N N 28.710 1.540 61.791 -3.170 -1.059 1.415 HCD2 LP6 30 LP6 H131 H131 H 0 0 N N N N N N 30.304 4.909 63.648 -6.011 1.339 -0.205 H131 LP6 31 LP6 H132 H132 H 0 0 N N N N N N 28.851 5.400 62.685 -5.019 0.731 -1.553 H132 LP6 32 LP6 HXT HOT H 0 1 N Y N Y N Y 31.654 4.794 54.276 5.619 -2.152 0.201 HOT LP6 33 LP6 HCA1 HCA1 H 0 0 N N N N N N 29.258 2.727 64.123 -5.647 -0.763 1.035 HCA1 LP6 34 LP6 HCA2 HCA2 H 0 0 N N N N N N 28.173 4.056 64.641 -6.333 -1.111 -0.572 HCA2 LP6 35 LP6 HCC1 HCC1 H 0 0 N N N N N N 26.981 2.233 63.377 -4.431 -2.633 -0.019 HCC1 LP6 36 LP6 HCC2 HCC2 H 0 0 N N N N N N 26.876 3.861 62.574 -4.082 -1.622 -1.443 HCC2 LP6 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LP6 N CA SING N N 1 LP6 CA CB SING N N 2 LP6 CA C SING N N 3 LP6 CB CG SING N N 4 LP6 CG CD SING N N 5 LP6 CD CE SING N N 6 LP6 CE NZ SING N N 7 LP6 NZ CM SING N N 8 LP6 NZ CCD SING N N 9 LP6 CM C13 SING N N 10 LP6 C O DOUB N N 11 LP6 C OXT SING N N 12 LP6 C13 CCA SING N N 13 LP6 CCA CCC SING N N 14 LP6 CCC CCD SING N N 15 LP6 N H SING N N 16 LP6 N H2 SING N N 17 LP6 CA HA SING N N 18 LP6 CB HB1C SING N N 19 LP6 CB HB2C SING N N 20 LP6 CG HG1C SING N N 21 LP6 CG HG2C SING N N 22 LP6 CD HD1C SING N N 23 LP6 CD HD2C SING N N 24 LP6 CE HE1C SING N N 25 LP6 CE HE2C SING N N 26 LP6 CM HM1C SING N N 27 LP6 CM HM2C SING N N 28 LP6 CCD HCD1 SING N N 29 LP6 CCD HCD2 SING N N 30 LP6 C13 H131 SING N N 31 LP6 C13 H132 SING N N 32 LP6 OXT HXT SING N N 33 LP6 CCA HCA1 SING N N 34 LP6 CCA HCA2 SING N N 35 LP6 CCC HCC1 SING N N 36 LP6 CCC HCC2 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LP6 SMILES ACDLabs 10.04 "O=C(O)C(N)CCCCN1CCCCC1" LP6 SMILES_CANONICAL CACTVS 3.352 "N[C@@H](CCCCN1CCCCC1)C(O)=O" LP6 SMILES CACTVS 3.352 "N[CH](CCCCN1CCCCC1)C(O)=O" LP6 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C1CCN(CC1)CCCC[C@@H](C(=O)O)N" LP6 SMILES "OpenEye OEToolkits" 1.6.1 "C1CCN(CC1)CCCCC(C(=O)O)N" LP6 InChI InChI 1.03 "InChI=1S/C11H22N2O2/c12-10(11(14)15)6-2-5-9-13-7-3-1-4-8-13/h10H,1-9,12H2,(H,14,15)/t10-/m0/s1" LP6 InChIKey InChI 1.03 UCDGEGRDGSSPQT-JTQLQIEISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LP6 "SYSTEMATIC NAME" ACDLabs 10.04 6-piperidin-1-yl-L-norleucine LP6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-amino-6-piperidin-1-yl-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LP6 "Create component" 2009-01-06 EBI LP6 "Modify descriptor" 2011-06-04 RCSB LP6 "Modify backbone" 2023-11-03 PDBE #