data_LPD
# 
_chem_comp.id                                    LPD 
_chem_comp.name                                  L-PROLINAMIDE 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C5 H10 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               PRO 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-08-24 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        114.146 
_chem_comp.one_letter_code                       P 
_chem_comp.three_letter_code                     LPD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2H9E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LPD O    O    O 0 1 N N N N N N 46.654 -9.264 64.795 1.223  -0.232 -0.052 O    LPD 1  
LPD C    C    C 0 1 N N N N N N 46.597 -8.529 63.794 0.429  -0.215 -0.989 C    LPD 2  
LPD N2   N2   N 0 1 N N N N N N 47.175 -8.851 62.656 -0.206 0.918  -1.442 N2   LPD 3  
LPD CA   CA   C 0 1 N N S N N N 45.766 -7.243 63.788 0.050  -1.458 -1.734 CA   LPD 4  
LPD N    N    N 0 1 N N N N N N 44.569 -7.513 64.571 0.765  -2.586 -1.138 N    LPD 5  
LPD CD   CD   C 0 1 N N N N N N 44.711 -6.944 65.900 -0.105 -3.129 -0.100 CD   LPD 6  
LPD CG   CG   C 0 1 N N N N N N 45.964 -6.064 65.887 -1.477 -3.051 -0.736 CG   LPD 7  
LPD CB   CB   C 0 1 N N N N N N 46.465 -6.063 64.462 -1.432 -1.782 -1.579 CB   LPD 8  
LPD HN21 1HN2 H 0 0 N N N N N N 47.040 -8.159 61.947 -0.006 1.802  -0.987 HN21 LPD 9  
LPD HN22 2HN2 H 0 0 N N N N N N 47.693 -9.695 62.516 -0.867 0.904  -2.212 HN22 LPD 10 
LPD HA   HA   H 0 1 N N N N N N 45.576 -6.973 62.739 0.331  -1.321 -2.782 HA   LPD 11 
LPD H    HN   H 0 1 N N N N N N 43.777 -7.103 64.118 1.673  -2.317 -0.765 H    LPD 12 
LPD HD3  1HD  H 0 1 N N N N N N 43.826 -6.341 66.152 -0.057 -2.514 0.806  HD3  LPD 13 
LPD HD2  2HD  H 0 1 N N N N N N 44.802 -7.739 66.655 0.170  -4.155 0.161  HD2  LPD 14 
LPD HG3  1HG  H 0 1 N N N N N N 45.721 -5.041 66.212 -2.280 -3.024 0.007  HG3  LPD 15 
LPD HG2  2HG  H 0 1 N N N N N N 46.728 -6.448 66.578 -1.647 -3.919 -1.385 HG2  LPD 16 
LPD HB2  1HB  H 0 1 N N N N N N 47.558 -6.184 64.430 -1.907 -1.964 -2.549 HB2  LPD 17 
LPD HB3  2HB  H 0 1 N N N N N N 46.245 -5.113 63.953 -1.981 -0.974 -1.082 HB3  LPD 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LPD O  C    DOUB N N 1  
LPD C  N2   SING N N 2  
LPD C  CA   SING N N 3  
LPD N2 HN21 SING N N 4  
LPD N2 HN22 SING N N 5  
LPD CA N    SING N N 6  
LPD CA CB   SING N N 7  
LPD CA HA   SING N N 8  
LPD N  CD   SING N N 9  
LPD N  H    SING N N 10 
LPD CD CG   SING N N 11 
LPD CD HD3  SING N N 12 
LPD CD HD2  SING N N 13 
LPD CG CB   SING N N 14 
LPD CG HG3  SING N N 15 
LPD CG HG2  SING N N 16 
LPD CB HB2  SING N N 17 
LPD CB HB3  SING N N 18 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LPD SMILES           ACDLabs              10.04 "O=C(N)C1NCCC1"                                                       
LPD SMILES_CANONICAL CACTVS               3.341 "NC(=O)[C@@H]1CCCN1"                                                  
LPD SMILES           CACTVS               3.341 "NC(=O)[CH]1CCCN1"                                                    
LPD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1C[C@H](NC1)C(=O)N"                                                 
LPD SMILES           "OpenEye OEToolkits" 1.5.0 "C1CC(NC1)C(=O)N"                                                     
LPD InChI            InChI                1.03  "InChI=1S/C5H10N2O/c6-5(8)4-2-1-3-7-4/h4,7H,1-3H2,(H2,6,8)/t4-/m0/s1" 
LPD InChIKey         InChI                1.03  VLJNHYLEOZPXFW-BYPYZUCNSA-N                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LPD "SYSTEMATIC NAME" ACDLabs              10.04 L-prolinamide                    
LPD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LPD "Create component"  2006-08-24 RCSB 
LPD "Modify descriptor" 2011-06-04 RCSB 
LPD "Modify PCM"        2024-09-27 PDBE 
#