data_LPE # _chem_comp.id LPE _chem_comp.name 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H57 N O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms LPC-ETHER _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2002-03-29 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.708 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LPE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LPE C1 C1 C 0 1 N N N 53.174 22.947 -11.809 -13.660 1.938 7.981 C1 LPE 1 LPE O1 O1 O 0 1 N N N 52.028 23.760 -11.808 -13.855 0.698 7.313 O1 LPE 2 LPE C2 C2 C 0 1 N N R 53.916 23.119 -13.108 -13.762 3.068 6.966 C2 LPE 3 LPE O2H O2H O 0 1 N N N 54.211 24.513 -13.270 -15.060 3.009 6.369 O2H LPE 4 LPE C3 C3 C 0 1 N N N 55.192 22.339 -13.079 -13.591 4.430 7.629 C3 LPE 5 LPE C11 C11 C 0 1 N N N 50.918 23.096 -11.257 -13.750 -0.400 8.207 C11 LPE 6 LPE C12 C12 C 0 1 N N N 49.628 23.667 -11.808 -13.964 -1.708 7.455 C12 LPE 7 LPE O3 O3 O 0 1 N N N 55.724 22.137 -14.367 -13.688 5.460 6.651 O3 LPE 8 LPE P P P 0 1 N N R 57.314 21.900 -14.526 -13.534 6.994 7.137 P LPE 9 LPE O31 O31 O 0 1 N N N 57.960 22.444 -13.260 -12.225 7.329 7.792 O31 LPE 10 LPE O32 O32 O 0 1 N N N 57.595 20.471 -14.919 -13.838 7.843 5.793 O32 LPE 11 LPE O33 O33 O 0 1 N N N 57.691 22.912 -15.709 -14.842 7.219 8.064 O33 LPE 12 LPE C31 C31 C 0 1 N N N 57.743 24.314 -15.415 -16.133 6.936 7.551 C31 LPE 13 LPE C32 C32 C 0 1 N N N 57.622 25.121 -16.711 -17.176 7.229 8.612 C32 LPE 14 LPE N N N 1 1 N N N 56.230 25.590 -16.872 -18.522 6.894 8.081 N LPE 15 LPE C1N C1N C 0 1 N N N 56.139 27.065 -17.000 -18.849 7.748 6.849 C1N LPE 16 LPE C2N C2N C 0 1 N N N 55.637 24.988 -18.093 -18.593 5.417 7.672 C2N LPE 17 LPE C3N C3N C 0 1 N N N 55.429 25.151 -15.703 -19.603 7.150 9.140 C3N LPE 18 LPE C13 C13 C 0 1 N N N 49.872 24.470 -13.070 -13.875 -2.927 8.379 C13 LPE 19 LPE C14 C14 C 0 1 N N N 49.926 25.964 -12.759 -14.110 -4.257 7.656 C14 LPE 20 LPE C15 C15 C 0 1 N N N 49.064 26.718 -13.798 -14.052 -5.473 8.583 C15 LPE 21 LPE C16 C16 C 0 1 N N N 49.982 27.600 -14.683 -14.220 -6.776 7.798 C16 LPE 22 LPE C17 C17 C 0 1 N N N ? ? ? -14.124 -7.994 8.718 C17 LPE 23 LPE C18 C18 C 0 1 N N N ? ? ? -14.265 -9.330 7.981 C18 LPE 24 LPE C19 C19 C 0 1 N N N ? ? ? -14.092 -10.587 8.839 C19 LPE 25 LPE C20 C20 C 0 1 N N N ? ? ? -14.299 -11.889 8.062 C20 LPE 26 LPE C21 C21 C 0 1 N N N ? ? ? -14.105 -13.110 8.965 C21 LPE 27 LPE C22 C22 C 0 1 N N N ? ? ? -14.348 -14.411 8.198 C22 LPE 28 LPE C23 C23 C 0 1 N N N ? ? ? -14.185 -15.667 9.059 C23 LPE 29 LPE C24 C24 C 0 1 N N N ? ? ? -14.500 -16.996 8.365 C24 LPE 30 LPE C25 C25 C 0 1 N N N ? ? ? -14.267 -18.217 9.258 C25 LPE 31 LPE C26 C26 C 0 1 N N N ? ? ? -14.589 -19.545 8.565 C26 LPE 32 LPE C27 C27 C 0 1 N N N ? ? ? -14.292 -20.806 9.380 C27 LPE 33 LPE C28 C28 C 0 1 N N N ? ? ? -14.676 -22.095 8.670 C28 LPE 34 LPE H11 1H1 H 0 1 N N N 53.828 23.236 -10.973 -14.430 2.027 8.754 H11 LPE 35 LPE H12 2H1 H 0 1 N N N 52.875 21.895 -11.696 -12.671 1.918 8.451 H12 LPE 36 LPE H21 1H2 H 0 1 N N N 53.301 22.754 -13.944 -13.036 2.928 6.157 H21 LPE 37 LPE HO21 1HO2 H 0 0 N N N 54.276 24.925 -12.416 -15.470 2.193 6.691 HO21 LPE 38 LPE H31 1H3 H 0 1 N N N 55.928 22.895 -12.480 -12.617 4.520 8.120 H31 LPE 39 LPE H32 2H3 H 0 1 N N N 54.975 21.352 -12.644 -14.377 4.610 8.369 H32 LPE 40 LPE H111 1H11 H 0 0 N N N 50.976 22.027 -11.511 -12.764 -0.377 8.681 H111 LPE 41 LPE H112 2H11 H 0 0 N N N 50.929 23.231 -10.165 -14.515 -0.285 8.982 H112 LPE 42 LPE H121 1H12 H 0 0 N N N 48.944 22.838 -12.042 -13.205 -1.802 6.669 H121 LPE 43 LPE H122 2H12 H 0 0 N N N 49.193 24.335 -11.050 -14.946 -1.673 6.971 H122 LPE 44 LPE HO31 1HO3 H 0 0 N N N 57.654 20.408 -15.865 -13.124 7.947 5.127 HO31 LPE 45 LPE H311 1H31 H 0 0 N N N 56.913 24.577 -14.743 -16.164 5.875 7.283 H311 LPE 46 LPE H312 2H31 H 0 0 N N N 58.702 24.548 -14.930 -16.296 7.532 6.648 H312 LPE 47 LPE H321 1H32 H 0 0 N N N 58.298 25.988 -16.668 -17.205 8.289 8.879 H321 LPE 48 LPE H322 2H32 H 0 0 N N N 57.895 24.485 -17.566 -17.029 6.616 9.504 H322 LPE 49 LPE H1N1 1H1N H 0 0 N N N 56.116 27.520 -15.999 -19.896 7.575 6.591 H1N1 LPE 50 LPE H1N2 2H1N H 0 0 N N N 57.013 27.439 -17.553 -18.677 8.794 7.111 H1N2 LPE 51 LPE H1N3 3H1N H 0 0 N N N 55.220 27.330 -17.543 -18.188 7.433 6.039 H1N3 LPE 52 LPE H2N1 1H2N H 0 0 N N N 55.490 25.769 -18.853 -19.327 4.927 8.315 H2N1 LPE 53 LPE H2N2 2H2N H 0 0 N N N 56.314 24.216 -18.487 -18.899 5.375 6.625 H2N2 LPE 54 LPE H2N3 3H2N H 0 0 N N N 54.667 24.533 -17.843 -17.600 4.984 7.809 H2N3 LPE 55 LPE H3N1 1H3N H 0 0 N N N 56.086 25.042 -14.828 -19.351 6.561 10.024 H3N1 LPE 56 LPE H3N2 2H3N H 0 0 N N N 54.653 25.901 -15.488 -19.604 8.218 9.366 H3N2 LPE 57 LPE H3N3 3H3N H 0 0 N N N 54.954 24.184 -15.927 -20.561 6.837 8.720 H3N3 LPE 58 LPE H131 1H13 H 0 0 N N N 50.830 24.161 -13.513 -12.878 -2.964 8.837 H131 LPE 59 LPE H132 2H13 H 0 0 N N N 49.046 24.285 -13.772 -14.594 -2.822 9.200 H132 LPE 60 LPE H141 1H14 H 0 0 N N N 49.534 26.147 -11.748 -15.078 -4.229 7.141 H141 LPE 61 LPE H142 2H14 H 0 0 N N N 50.966 26.319 -12.807 -13.343 -4.363 6.880 H142 LPE 62 LPE H151 1H15 H 0 0 N N N 48.531 25.992 -14.430 -14.842 -5.408 9.340 H151 LPE 63 LPE H152 2H15 H 0 0 N N N 48.333 27.354 -13.278 -13.092 -5.485 9.114 H152 LPE 64 LPE H161 1H16 H 0 0 N N N 50.628 28.456 -14.928 -15.192 -6.764 7.291 H161 LPE 65 LPE H162 2H16 H 0 0 N N N 50.857 27.866 -15.295 -13.448 -6.841 7.021 H162 LPE 66 LPE H171 1H17 H 0 0 N N N ? ? ? -14.876 -7.922 9.512 H171 LPE 67 LPE H172 2H17 H 0 0 N N N ? ? ? -13.148 -7.987 9.221 H172 LPE 68 LPE H181 1H18 H 0 0 N N N ? ? ? -13.531 -9.354 7.166 H181 LPE 69 LPE H182 2H18 H 0 0 N N N ? ? ? -15.253 -9.369 7.507 H182 LPE 70 LPE H191 1H19 H 0 0 N N N ? ? ? -14.819 -10.541 9.659 H191 LPE 71 LPE H192 2H19 H 0 0 N N N ? ? ? -13.101 -10.588 9.309 H192 LPE 72 LPE H201 1H20 H 0 0 N N N ? ? ? -13.590 -11.947 7.229 H201 LPE 73 LPE H202 2H20 H 0 0 N N N ? ? ? -15.308 -11.904 7.633 H202 LPE 74 LPE H211 1H21 H 0 0 N N N ? ? ? -13.086 -13.094 9.368 H211 LPE 75 LPE H212 2H21 H 0 0 N N N ? ? ? -14.794 -13.052 9.817 H212 LPE 76 LPE H221 1H22 H 0 0 N N N ? ? ? -13.680 -14.462 7.330 H221 LPE 77 LPE H222 2H22 H 0 0 N N N ? ? ? -15.369 -14.404 7.797 H222 LPE 78 LPE H231 1H23 H 0 0 N N N ? ? ? -14.831 -15.567 9.941 H231 LPE 79 LPE H232 2H23 H 0 0 N N N ? ? ? -13.156 -15.708 9.436 H232 LPE 80 LPE H241 1H24 H 0 0 N N N ? ? ? -13.859 -17.074 7.477 H241 LPE 81 LPE H242 2H24 H 0 0 N N N ? ? ? -15.532 -16.983 7.999 H242 LPE 82 LPE H251 1H25 H 0 0 N N N ? ? ? -14.855 -18.133 10.178 H251 LPE 83 LPE H252 2H25 H 0 0 N N N ? ? ? -13.213 -18.240 9.564 H252 LPE 84 LPE H261 1H26 H 0 0 N N N ? ? ? -14.024 -19.590 7.626 H261 LPE 85 LPE H262 2H26 H 0 0 N N N ? ? ? -15.650 -19.553 8.286 H262 LPE 86 LPE H271 1H27 H 0 0 N N N ? ? ? -14.854 -20.747 10.321 H271 LPE 87 LPE H272 2H27 H 0 0 N N N ? ? ? -13.233 -20.842 9.656 H272 LPE 88 LPE H281 1H28 H 0 0 N N N ? ? ? -14.541 -22.948 9.341 H281 LPE 89 LPE H282 2H28 H 0 0 N N N ? ? ? -14.054 -22.267 7.787 H282 LPE 90 LPE H283 3H28 H 0 0 N N N ? ? ? -15.725 -22.073 8.356 H283 LPE 91 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LPE C1 O1 SING N N 1 LPE C1 C2 SING N N 2 LPE C1 H11 SING N N 3 LPE C1 H12 SING N N 4 LPE O1 C11 SING N N 5 LPE C2 O2H SING N N 6 LPE C2 C3 SING N N 7 LPE C2 H21 SING N N 8 LPE O2H HO21 SING N N 9 LPE C3 O3 SING N N 10 LPE C3 H31 SING N N 11 LPE C3 H32 SING N N 12 LPE C11 C12 SING N N 13 LPE C11 H111 SING N N 14 LPE C11 H112 SING N N 15 LPE C12 C13 SING N N 16 LPE C12 H121 SING N N 17 LPE C12 H122 SING N N 18 LPE O3 P SING N N 19 LPE P O31 DOUB N N 20 LPE P O32 SING N N 21 LPE P O33 SING N N 22 LPE O32 HO31 SING N N 23 LPE O33 C31 SING N N 24 LPE C31 C32 SING N N 25 LPE C31 H311 SING N N 26 LPE C31 H312 SING N N 27 LPE C32 N SING N N 28 LPE C32 H321 SING N N 29 LPE C32 H322 SING N N 30 LPE N C1N SING N N 31 LPE N C2N SING N N 32 LPE N C3N SING N N 33 LPE C1N H1N1 SING N N 34 LPE C1N H1N2 SING N N 35 LPE C1N H1N3 SING N N 36 LPE C2N H2N1 SING N N 37 LPE C2N H2N2 SING N N 38 LPE C2N H2N3 SING N N 39 LPE C3N H3N1 SING N N 40 LPE C3N H3N2 SING N N 41 LPE C3N H3N3 SING N N 42 LPE C13 C14 SING N N 43 LPE C13 H131 SING N N 44 LPE C13 H132 SING N N 45 LPE C14 C15 SING N N 46 LPE C14 H141 SING N N 47 LPE C14 H142 SING N N 48 LPE C15 C16 SING N N 49 LPE C15 H151 SING N N 50 LPE C15 H152 SING N N 51 LPE C16 C17 SING N N 52 LPE C16 H161 SING N N 53 LPE C16 H162 SING N N 54 LPE C17 C18 SING N N 55 LPE C17 H171 SING N N 56 LPE C17 H172 SING N N 57 LPE C18 C19 SING N N 58 LPE C18 H181 SING N N 59 LPE C18 H182 SING N N 60 LPE C19 C20 SING N N 61 LPE C19 H191 SING N N 62 LPE C19 H192 SING N N 63 LPE C20 C21 SING N N 64 LPE C20 H201 SING N N 65 LPE C20 H202 SING N N 66 LPE C21 C22 SING N N 67 LPE C21 H211 SING N N 68 LPE C21 H212 SING N N 69 LPE C22 C23 SING N N 70 LPE C22 H221 SING N N 71 LPE C22 H222 SING N N 72 LPE C23 C24 SING N N 73 LPE C23 H231 SING N N 74 LPE C23 H232 SING N N 75 LPE C24 C25 SING N N 76 LPE C24 H241 SING N N 77 LPE C24 H242 SING N N 78 LPE C25 C26 SING N N 79 LPE C25 H251 SING N N 80 LPE C25 H252 SING N N 81 LPE C26 C27 SING N N 82 LPE C26 H261 SING N N 83 LPE C26 H262 SING N N 84 LPE C27 C28 SING N N 85 LPE C27 H271 SING N N 86 LPE C27 H272 SING N N 87 LPE C28 H281 SING N N 88 LPE C28 H282 SING N N 89 LPE C28 H283 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LPE SMILES ACDLabs 10.04 "O=P(OCC(O)COCCCCCCCCCCCCCCCCCC)(OCC[N+](C)(C)C)O" LPE SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCCCCCCCCCCOC[C@@H](O)CO[P@](O)(=O)OCC[N+](C)(C)C" LPE SMILES CACTVS 3.341 "CCCCCCCCCCCCCCCCCCOC[CH](O)CO[P](O)(=O)OCC[N+](C)(C)C" LPE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCCCCCCOC[C@H](CO[P@@](=O)(O)OCC[N+](C)(C)C)O" LPE SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCCCCCCOCC(COP(=O)(O)OCC[N+](C)(C)C)O" LPE InChI InChI 1.03 "InChI=1S/C26H56NO6P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-22-31-24-26(28)25-33-34(29,30)32-23-21-27(2,3)4/h26,28H,5-25H2,1-4H3/p+1/t26-/m1/s1" LPE InChIKey InChI 1.03 XKBJVQHMEXMFDZ-AREMUKBSSA-O # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LPE "SYSTEMATIC NAME" ACDLabs 10.04 "(4S,7R)-4,7-dihydroxy-N,N,N-trimethyl-3,5,9-trioxa-4-phosphaheptacosan-1-aminium 4-oxide" LPE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[hydroxy-[(2R)-2-hydroxy-3-octadecoxy-propoxy]phosphoryl]oxyethyl-trimethyl-azanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LPE "Create component" 2002-03-29 RCSB LPE "Modify descriptor" 2011-06-04 RCSB LPE "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LPE _pdbx_chem_comp_synonyms.name LPC-ETHER _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##