data_LPH # _chem_comp.id LPH _chem_comp.name L-Propargylglycine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H7 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-2-aminopent-4-ynoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-10-03 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 113.115 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LPH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4WJ5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LPH CD CD C 0 1 N N N N N N -3.986 0.226 27.358 -3.388 0.280 -0.131 CD LPH 1 LPH CG CG C 0 1 N N N N N N -5.171 0.693 27.407 -2.267 0.400 0.197 CG LPH 2 LPH CB CB C 0 1 N N N N N N -6.523 1.250 27.477 -0.862 0.550 0.609 CB LPH 3 LPH CA CA C 0 1 N N S Y N N -7.480 0.871 26.416 0.045 -0.153 -0.403 CA LPH 4 LPH N N N 0 1 N N N Y Y N -7.150 1.188 25.079 -0.216 -1.599 -0.372 N LPH 5 LPH C C C 0 1 N N N Y N Y -8.888 0.926 26.864 1.487 0.104 -0.050 C LPH 6 LPH OXT OXT O 0 1 N Y N Y N Y -9.342 0.400 27.884 2.064 1.267 -0.391 OXT LPH 7 LPH O O O 0 1 N N N Y N Y -9.637 1.728 26.166 2.124 -0.736 0.541 O LPH 8 LPH H1 H1 H 0 1 N N N N N N -3.001 -0.162 27.317 -4.390 0.172 -0.425 H1 LPH 9 LPH H4 H2 H 0 1 N N N N N N -6.428 2.346 27.457 -0.607 1.609 0.651 H2 LPH 10 LPH H3 H3 H 0 1 N N N N N N -6.957 0.937 28.438 -0.722 0.104 1.594 H3 LPH 11 LPH HA H4 H 0 1 N N N Y N N -7.328 -0.218 26.404 -0.159 0.232 -1.402 H4 LPH 12 LPH H H5 H 0 1 N N N Y Y N -6.162 1.100 24.949 -0.035 -1.980 0.544 H5 LPH 13 LPH H2 H6 H 0 1 N Y N Y Y N -7.624 0.561 24.461 -1.160 -1.802 -0.668 H6 LPH 14 LPH HXT H8 H 0 1 N Y N Y N Y -10.239 0.683 28.014 2.991 1.386 -0.143 H8 LPH 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LPH N CA SING N N 1 LPH O C DOUB N N 2 LPH CA C SING N N 3 LPH CA CB SING N N 4 LPH C OXT SING N N 5 LPH CD CG TRIP N N 6 LPH CG CB SING N N 7 LPH CD H1 SING N N 8 LPH CB H4 SING N N 9 LPH CB H3 SING N N 10 LPH CA HA SING N N 11 LPH N H SING N N 12 LPH N H2 SING N N 13 LPH OXT HXT SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LPH SMILES ACDLabs 12.01 "O=C(O)C(N)CC#C" LPH InChI InChI 1.03 "InChI=1S/C5H7NO2/c1-2-3-4(6)5(7)8/h1,4H,3,6H2,(H,7,8)/t4-/m0/s1" LPH InChIKey InChI 1.03 DGYHPLMPMRKMPD-BYPYZUCNSA-N LPH SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CC#C)C(O)=O" LPH SMILES CACTVS 3.385 "N[CH](CC#C)C(O)=O" LPH SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C#CC[C@@H](C(=O)O)N" LPH SMILES "OpenEye OEToolkits" 1.9.2 "C#CCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LPH "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-aminopent-4-ynoic acid" LPH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanylpent-4-ynoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LPH "Create component" 2014-10-03 EBI LPH "Initial release" 2014-10-29 RCSB LPH "Modify synonyms" 2021-03-01 PDBE LPH "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LPH _pdbx_chem_comp_synonyms.name "(2S)-2-aminopent-4-ynoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #