data_LPV # _chem_comp.id LPV _chem_comp.name "(2~{R},3~{S})-3-azanyl-~{N}-[(2~{R})-4-(4-butylphenoxy)-1-phenyl-butan-2-yl]-2-oxidanyl-butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H34 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.538 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LPV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AB5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LPV N1 N1 N 0 1 N N N N N N 27.732 -7.127 -1.952 -2.192 0.064 -0.833 N1 LPV 1 LPV C4 C1 C 0 1 N N N N N N 29.311 -2.734 -2.393 -1.996 -4.365 -1.266 C4 LPV 2 LPV C5 C2 C 0 1 N N N N N N 27.037 -9.336 -1.049 -3.191 2.288 -0.641 C5 LPV 3 LPV C6 C3 C 0 1 N N R N N N 27.594 -8.580 -2.243 -1.966 1.423 -0.336 C6 LPV 4 LPV C7 C4 C 0 1 N N N N N N 28.953 -9.136 -2.634 -0.737 2.020 -1.025 C7 LPV 5 LPV C8 C5 C 0 1 N N N N N N 28.821 -10.420 -3.445 0.509 1.229 -0.621 C8 LPV 6 LPV C10 C6 C 0 1 Y N N N N N 24.838 -8.098 -1.144 -4.635 2.258 1.403 C10 LPV 7 LPV C13 C7 C 0 1 Y N N N N N 24.655 -8.150 1.644 -6.288 0.340 0.291 C13 LPV 8 LPV C15 C8 C 0 1 Y N N N N N 30.225 -11.859 -4.805 2.854 1.196 -1.009 C15 LPV 9 LPV C17 C9 C 0 1 Y N N N N N 29.892 -14.269 -4.959 5.226 1.083 -1.340 C17 LPV 10 LPV C20 C10 C 0 1 Y N N N N N 31.060 -11.908 -5.916 2.922 0.099 -0.162 C20 LPV 11 LPV C21 C11 C 0 1 N N N N N N 30.985 -15.666 -6.793 6.617 -0.669 -0.218 C21 LPV 12 LPV C22 C12 C 0 1 N N N N N N 29.690 -16.364 -7.234 7.259 -0.013 1.007 C22 LPV 13 LPV C24 C13 C 0 1 N N N N N N 27.807 -16.309 -8.881 9.249 -0.023 2.517 C24 LPV 14 LPV C23 C14 C 0 1 N N N N N N 29.262 -15.909 -8.633 8.607 -0.678 1.293 C23 LPV 15 LPV C18 C15 C 0 1 Y N N N N N 30.722 -14.323 -6.076 5.290 -0.014 -0.500 C18 LPV 16 LPV C19 C16 C 0 1 Y N N N N N 31.304 -13.133 -6.540 4.139 -0.503 0.090 C19 LPV 17 LPV C16 C17 C 0 1 Y N N N N N 29.641 -13.050 -4.335 4.010 1.685 -1.600 C16 LPV 18 LPV O3 O1 O 0 1 N N N N N N 30.011 -10.605 -4.186 1.657 1.786 -1.264 O3 LPV 19 LPV C1 C18 C 0 1 N N N N N N 27.283 -6.146 -2.762 -2.857 -0.829 -0.073 C1 LPV 20 LPV O1 O2 O 0 1 N N N N N N 26.580 -6.331 -3.790 -3.263 -0.509 1.023 O1 LPV 21 LPV C2 C19 C 0 1 N N R N N N 27.616 -4.660 -2.336 -3.095 -2.226 -0.586 C2 LPV 22 LPV O2 O3 O 0 1 N N N N N N 26.791 -3.824 -3.150 -3.914 -2.941 0.341 O2 LPV 23 LPV C3 C20 C 0 1 N N S N N N 29.101 -4.253 -2.559 -1.755 -2.947 -0.745 C3 LPV 24 LPV N2 N2 N 0 1 N N N Y Y N 29.501 -4.678 -3.901 -1.077 -3.012 0.557 N2 LPV 25 LPV C9 C21 C 0 1 Y N N N N N 25.835 -8.686 -0.385 -4.375 1.772 0.135 C9 LPV 26 LPV C11 C22 C 0 1 Y N N N N N 23.749 -7.520 -0.511 -5.722 1.784 2.115 C11 LPV 27 LPV C12 C23 C 0 1 Y N N N N N 23.665 -7.546 0.879 -6.548 0.826 1.559 C12 LPV 28 LPV C14 C24 C 0 1 Y N N N N N 25.736 -8.741 1.008 -5.201 0.814 -0.421 C14 LPV 29 LPV H1 H1 H 0 1 N N N N N N 28.186 -6.861 -1.102 -1.867 -0.193 -1.710 H1 LPV 30 LPV H2 H2 H 0 1 N N N N N N 29.006 -2.430 -1.381 -2.621 -4.910 -0.558 H2 LPV 31 LPV H3 H3 H 0 1 N N N N N N 30.373 -2.492 -2.544 -2.499 -4.316 -2.232 H3 LPV 32 LPV H4 H4 H 0 1 N N N N N N 28.703 -2.197 -3.136 -1.041 -4.878 -1.379 H4 LPV 33 LPV H5 H5 H 0 1 N N N N N N 26.739 -10.339 -1.388 -2.989 3.319 -0.352 H5 LPV 34 LPV H6 H6 H 0 1 N N N N N N 27.836 -9.425 -0.298 -3.409 2.246 -1.708 H6 LPV 35 LPV H7 H7 H 0 1 N N N N N N 26.906 -8.710 -3.091 -1.800 1.394 0.740 H7 LPV 36 LPV H8 H8 H 0 1 N N N N N N 29.528 -9.348 -1.721 -0.865 1.968 -2.106 H8 LPV 37 LPV H9 H9 H 0 1 N N N N N N 29.486 -8.386 -3.237 -0.620 3.061 -0.723 H9 LPV 38 LPV H10 H10 H 0 1 N N N N N N 27.965 -10.340 -4.131 0.637 1.281 0.461 H10 LPV 39 LPV H11 H11 H 0 1 N N N N N N 28.669 -11.273 -2.768 0.392 0.188 -0.923 H11 LPV 40 LPV H12 H12 H 0 1 N N N N N N 24.908 -8.090 -2.222 -3.987 3.003 1.839 H12 LPV 41 LPV H13 H13 H 0 1 N N N N N N 24.583 -8.159 2.722 -6.934 -0.408 -0.144 H13 LPV 42 LPV H14 H14 H 0 1 N N N N N N 29.443 -15.174 -4.576 6.126 1.463 -1.800 H14 LPV 43 LPV H15 H15 H 0 1 N N N N N N 31.516 -11.005 -6.293 2.024 -0.284 0.299 H15 LPV 44 LPV H16 H16 H 0 1 N N N N N N 31.528 -16.332 -6.106 7.273 -0.548 -1.081 H16 LPV 45 LPV H17 H17 H 0 1 N N N N N N 31.603 -15.475 -7.683 6.465 -1.730 -0.024 H17 LPV 46 LPV H18 H18 H 0 1 N N N N N N 28.891 -16.122 -6.518 7.412 1.048 0.812 H18 LPV 47 LPV H19 H19 H 0 1 N N N N N N 29.855 -17.451 -7.246 6.604 -0.134 1.869 H19 LPV 48 LPV H20 H20 H 0 1 N N N N N N 27.502 -15.981 -9.886 10.210 -0.497 2.721 H20 LPV 49 LPV H21 H21 H 0 1 N N N N N N 27.710 -17.402 -8.807 9.402 1.038 2.323 H21 LPV 50 LPV H22 H22 H 0 1 N N N N N N 27.162 -15.832 -8.128 8.594 -0.144 3.380 H22 LPV 51 LPV H23 H23 H 0 1 N N N N N N 29.906 -16.386 -9.386 8.455 -1.740 1.487 H23 LPV 52 LPV H24 H24 H 0 1 N N N N N N 29.359 -14.816 -8.708 9.263 -0.557 0.430 H24 LPV 53 LPV H25 H25 H 0 1 N N N N N N 31.956 -13.166 -7.400 4.193 -1.357 0.750 H25 LPV 54 LPV H26 H26 H 0 1 N N N N N N 28.987 -13.018 -3.476 3.959 2.536 -2.264 H26 LPV 55 LPV H27 H27 H 0 1 N Y N N N N 27.367 -4.535 -1.272 -3.598 -2.177 -1.553 H27 LPV 56 LPV H28 H28 H 0 1 N N N N N N 26.318 -4.359 -3.777 -3.528 -3.023 1.224 H28 LPV 57 LPV H29 H29 H 0 1 N N N N N N 29.717 -4.773 -1.811 -1.130 -2.401 -1.452 H29 LPV 58 LPV H30 H30 H 0 1 N N N Y Y N 29.360 -5.664 -3.995 -1.663 -3.457 1.248 H30 LPV 59 LPV H31 H31 H 0 1 N Y N Y Y N 28.949 -4.196 -4.582 -0.189 -3.484 0.479 H31 LPV 60 LPV H33 H33 H 0 1 N N N N N N 22.969 -7.052 -1.093 -5.925 2.164 3.105 H33 LPV 61 LPV H34 H34 H 0 1 N N N N N N 22.818 -7.090 1.369 -7.397 0.456 2.115 H34 LPV 62 LPV H35 H35 H 0 1 N N N N N N 26.498 -9.242 1.587 -4.998 0.434 -1.412 H35 LPV 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LPV C24 C23 SING N N 1 LPV C23 C22 SING N N 2 LPV C22 C21 SING N N 3 LPV C21 C18 SING N N 4 LPV C19 C18 DOUB Y N 5 LPV C19 C20 SING Y N 6 LPV C18 C17 SING Y N 7 LPV C20 C15 DOUB Y N 8 LPV C17 C16 DOUB Y N 9 LPV C15 C16 SING Y N 10 LPV C15 O3 SING N N 11 LPV O3 C8 SING N N 12 LPV N2 C3 SING N N 13 LPV O1 C1 DOUB N N 14 LPV C8 C7 SING N N 15 LPV O2 C2 SING N N 16 LPV C1 C2 SING N N 17 LPV C1 N1 SING N N 18 LPV C7 C6 SING N N 19 LPV C3 C4 SING N N 20 LPV C3 C2 SING N N 21 LPV C6 N1 SING N N 22 LPV C6 C5 SING N N 23 LPV C10 C11 DOUB Y N 24 LPV C10 C9 SING Y N 25 LPV C5 C9 SING N N 26 LPV C11 C12 SING Y N 27 LPV C9 C14 DOUB Y N 28 LPV C12 C13 DOUB Y N 29 LPV C14 C13 SING Y N 30 LPV N1 H1 SING N N 31 LPV C4 H2 SING N N 32 LPV C4 H3 SING N N 33 LPV C4 H4 SING N N 34 LPV C5 H5 SING N N 35 LPV C5 H6 SING N N 36 LPV C6 H7 SING N N 37 LPV C7 H8 SING N N 38 LPV C7 H9 SING N N 39 LPV C8 H10 SING N N 40 LPV C8 H11 SING N N 41 LPV C10 H12 SING N N 42 LPV C13 H13 SING N N 43 LPV C17 H14 SING N N 44 LPV C20 H15 SING N N 45 LPV C21 H16 SING N N 46 LPV C21 H17 SING N N 47 LPV C22 H18 SING N N 48 LPV C22 H19 SING N N 49 LPV C24 H20 SING N N 50 LPV C24 H21 SING N N 51 LPV C24 H22 SING N N 52 LPV C23 H23 SING N N 53 LPV C23 H24 SING N N 54 LPV C19 H25 SING N N 55 LPV C16 H26 SING N N 56 LPV C2 H27 SING N N 57 LPV O2 H28 SING N N 58 LPV C3 H29 SING N N 59 LPV N2 H30 SING N N 60 LPV N2 H31 SING N N 61 LPV C11 H33 SING N N 62 LPV C12 H34 SING N N 63 LPV C14 H35 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LPV InChI InChI 1.06 "InChI=1S/C24H34N2O3/c1-3-4-8-19-11-13-22(14-12-19)29-16-15-21(17-20-9-6-5-7-10-20)26-24(28)23(27)18(2)25/h5-7,9-14,18,21,23,27H,3-4,8,15-17,25H2,1-2H3,(H,26,28)/t18-,21-,23+/m0/s1" LPV InChIKey InChI 1.06 NJJDDOXTSSONSJ-AVCGJXAMSA-N LPV SMILES_CANONICAL CACTVS 3.385 "CCCCc1ccc(OCC[C@@H](Cc2ccccc2)NC(=O)[C@H](O)[C@H](C)N)cc1" LPV SMILES CACTVS 3.385 "CCCCc1ccc(OCC[CH](Cc2ccccc2)NC(=O)[CH](O)[CH](C)N)cc1" LPV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCc1ccc(cc1)OCC[C@@H](Cc2ccccc2)NC(=O)[C@@H]([C@H](C)N)O" LPV SMILES "OpenEye OEToolkits" 2.0.7 "CCCCc1ccc(cc1)OCCC(Cc2ccccc2)NC(=O)C(C(C)N)O" # _pdbx_chem_comp_identifier.comp_id LPV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S})-3-azanyl-~{N}-[(2~{R})-4-(4-butylphenoxy)-1-phenyl-butan-2-yl]-2-oxidanyl-butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LPV "Create component" 2022-07-07 PDBE LPV "Modify descriptor" 2022-08-22 RCSB LPV "Initial release" 2023-10-25 RCSB LPV "Modify backbone" 2023-11-03 PDBE LPV "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id LPV _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #