data_LQ6 # _chem_comp.id LQ6 _chem_comp.name "(2~{S})-4-[[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-6-yl]carbonyl]-1-(3,4-dichlorophenyl)-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H19 Cl2 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-07 _chem_comp.pdbx_modified_date 2022-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 508.378 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LQ6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ACD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LQ6 N1 N1 N 0 1 N N N 11.503 1.564 19.625 2.202 -0.739 0.853 N1 LQ6 1 LQ6 N3 N2 N 0 1 N N N 11.803 -0.184 16.994 4.650 -0.210 -1.325 N3 LQ6 2 LQ6 C4 C1 C 0 1 Y N N 9.906 2.014 23.512 -0.927 1.950 0.953 C4 LQ6 3 LQ6 C5 C2 C 0 1 N N N 11.142 2.914 21.613 1.402 1.563 0.856 C5 LQ6 4 LQ6 C6 C3 C 0 1 N N N 12.120 2.522 20.534 2.497 0.613 1.350 C6 LQ6 5 LQ6 C7 C4 C 0 1 N N N 11.062 0.363 20.331 0.856 -1.287 1.081 C7 LQ6 6 LQ6 C8 C5 C 0 1 N N S 10.082 0.728 21.443 -0.175 -0.261 0.598 C8 LQ6 7 LQ6 C10 C6 C 0 1 N N N 10.113 -2.100 23.982 -3.366 -2.362 0.833 C10 LQ6 8 LQ6 C13 C7 C 0 1 Y N N 8.760 -0.653 27.226 -3.700 -5.968 -0.080 C13 LQ6 9 LQ6 C15 C8 C 0 1 N N N 11.373 1.796 18.313 3.138 -1.456 0.199 C15 LQ6 10 LQ6 C17 C9 C 0 1 N N N 11.469 -1.234 16.184 5.831 0.353 -1.629 C17 LQ6 11 LQ6 C20 C10 C 0 1 Y N N 8.529 1.755 23.571 -1.251 2.237 -0.366 C20 LQ6 12 LQ6 N N3 N 0 1 N N N 10.650 1.736 22.347 0.087 1.033 1.241 N LQ6 13 LQ6 C C11 C 0 1 Y N N 7.821 2.039 24.728 -2.251 3.149 -0.648 C LQ6 14 LQ6 O O1 O 0 1 N N N 8.790 -1.276 21.657 -2.261 -0.054 1.681 O LQ6 15 LQ6 C1 C12 C 0 1 Y N N 8.475 2.569 25.829 -2.928 3.776 0.384 C1 LQ6 16 LQ6 C11 C13 C 0 1 Y N N 9.343 -1.573 25.149 -3.633 -3.691 0.175 C11 LQ6 17 LQ6 C12 C14 C 0 1 Y N N 9.834 -1.034 26.366 -3.367 -4.883 0.712 C12 LQ6 18 LQ6 C14 C15 C 0 1 Y N N 7.548 -0.893 26.672 -4.232 -5.657 -1.264 C14 LQ6 19 LQ6 C16 C16 C 0 1 N N N 10.872 0.720 17.441 4.452 -0.845 -0.118 C16 LQ6 20 LQ6 C18 C17 C 0 1 N N N 9.563 0.605 17.101 5.471 -0.906 0.778 C18 LQ6 21 LQ6 C19 C18 C 0 1 N N N 9.146 -0.460 16.258 6.753 -0.288 0.421 C19 LQ6 22 LQ6 C2 C19 C 0 1 Y N N 9.829 2.838 25.771 -2.606 3.492 1.699 C2 LQ6 23 LQ6 C3 C20 C 0 1 Y N N 10.542 2.564 24.618 -1.608 2.581 1.986 C3 LQ6 24 LQ6 C9 C21 C 0 1 N N N 9.720 -0.604 22.101 -1.560 -0.732 0.959 C9 LQ6 25 LQ6 N2 N4 N 0 1 N N N 10.492 -0.999 23.121 -2.020 -1.905 0.481 N2 LQ6 26 LQ6 N4 N5 N 0 1 N N N 10.147 -1.320 15.838 6.869 0.325 -0.775 N4 LQ6 27 LQ6 O1 O2 O 0 1 N N N 12.295 -2.067 15.822 5.964 0.904 -2.705 O1 LQ6 28 LQ6 O2 O3 O 0 1 N N N 7.986 -0.674 15.906 7.693 -0.320 1.194 O2 LQ6 29 LQ6 O3 O4 O 0 1 N N N 11.661 2.877 17.815 2.906 -2.602 -0.129 O3 LQ6 30 LQ6 S S1 S 0 1 Y N N 7.642 -1.581 25.112 -4.341 -3.909 -1.421 S LQ6 31 LQ6 CL CL1 CL 0 0 N N N 6.105 1.754 24.763 -2.658 3.508 -2.297 CL LQ6 32 LQ6 CL1 CL2 CL 0 0 N N N 7.622 2.867 27.308 -4.182 4.922 0.027 CL1 LQ6 33 LQ6 H15 H1 H 0 1 N N N 12.758 -0.071 17.270 3.922 -0.166 -1.965 H15 LQ6 34 LQ6 H3 H2 H 0 1 N N N 11.642 3.593 22.320 1.543 2.546 1.306 H3 LQ6 35 LQ6 H4 H3 H 0 1 N N N 10.288 3.430 21.151 1.456 1.648 -0.229 H4 LQ6 36 LQ6 H6 H4 H 0 1 N N N 13.008 2.066 20.996 2.513 0.606 2.440 H6 LQ6 37 LQ6 H5 H5 H 0 1 N N N 12.419 3.418 19.971 3.465 0.940 0.970 H5 LQ6 38 LQ6 H7 H6 H 0 1 N N N 10.567 -0.314 19.620 0.739 -2.215 0.522 H7 LQ6 39 LQ6 H8 H7 H 0 1 N N N 11.936 -0.141 20.769 0.714 -1.475 2.145 H8 LQ6 40 LQ6 H H8 H 0 1 N N N 9.173 1.138 20.978 -0.099 -0.151 -0.484 H LQ6 41 LQ6 H11 H9 H 0 1 N N N 9.487 -2.808 23.419 -4.099 -1.633 0.489 H11 LQ6 42 LQ6 H10 H10 H 0 1 N N N 11.017 -2.614 24.340 -3.442 -2.471 1.915 H10 LQ6 43 LQ6 H13 H11 H 0 1 N N N 8.898 -0.222 28.207 -3.537 -6.988 0.234 H13 LQ6 44 LQ6 H18 H12 H 0 1 N N N 8.021 1.335 22.716 -0.723 1.748 -1.171 H18 LQ6 45 LQ6 H12 H13 H 0 1 N N N 10.881 -0.926 26.609 -2.925 -4.993 1.692 H12 LQ6 46 LQ6 H14 H14 H 0 1 N N N 6.614 -0.671 27.168 -4.547 -6.370 -2.011 H14 LQ6 47 LQ6 H17 H15 H 0 1 N N N 8.842 1.320 17.469 5.341 -1.398 1.731 H17 LQ6 48 LQ6 H1 H16 H 0 1 N N N 10.331 3.263 26.627 -3.135 3.983 2.503 H1 LQ6 49 LQ6 H2 H17 H 0 1 N N N 11.600 2.779 24.577 -1.357 2.361 3.013 H2 LQ6 50 LQ6 H9 H18 H 0 1 N N N 11.353 -0.521 23.293 -1.459 -2.447 -0.096 H9 LQ6 51 LQ6 H16 H19 H 0 1 N N N 9.881 -2.068 15.230 7.709 0.741 -1.025 H16 LQ6 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LQ6 O1 C17 DOUB N N 1 LQ6 N4 C17 SING N N 2 LQ6 N4 C19 SING N N 3 LQ6 O2 C19 DOUB N N 4 LQ6 C17 N3 SING N N 5 LQ6 C19 C18 SING N N 6 LQ6 N3 C16 SING N N 7 LQ6 C18 C16 DOUB N N 8 LQ6 C16 C15 SING N N 9 LQ6 O3 C15 DOUB N N 10 LQ6 C15 N1 SING N N 11 LQ6 N1 C7 SING N N 12 LQ6 N1 C6 SING N N 13 LQ6 C7 C8 SING N N 14 LQ6 C6 C5 SING N N 15 LQ6 C8 C9 SING N N 16 LQ6 C8 N SING N N 17 LQ6 C5 N SING N N 18 LQ6 O C9 DOUB N N 19 LQ6 C9 N2 SING N N 20 LQ6 N C4 SING N N 21 LQ6 N2 C10 SING N N 22 LQ6 C4 C20 DOUB Y N 23 LQ6 C4 C3 SING Y N 24 LQ6 C20 C SING Y N 25 LQ6 C10 C11 SING N N 26 LQ6 C3 C2 DOUB Y N 27 LQ6 C CL SING N N 28 LQ6 C C1 DOUB Y N 29 LQ6 S C11 SING Y N 30 LQ6 S C14 SING Y N 31 LQ6 C11 C12 DOUB Y N 32 LQ6 C2 C1 SING Y N 33 LQ6 C1 CL1 SING N N 34 LQ6 C12 C13 SING Y N 35 LQ6 C14 C13 DOUB Y N 36 LQ6 N3 H15 SING N N 37 LQ6 C5 H3 SING N N 38 LQ6 C5 H4 SING N N 39 LQ6 C6 H6 SING N N 40 LQ6 C6 H5 SING N N 41 LQ6 C7 H7 SING N N 42 LQ6 C7 H8 SING N N 43 LQ6 C8 H SING N N 44 LQ6 C10 H11 SING N N 45 LQ6 C10 H10 SING N N 46 LQ6 C13 H13 SING N N 47 LQ6 C20 H18 SING N N 48 LQ6 C12 H12 SING N N 49 LQ6 C14 H14 SING N N 50 LQ6 C18 H17 SING N N 51 LQ6 C2 H1 SING N N 52 LQ6 C3 H2 SING N N 53 LQ6 N2 H9 SING N N 54 LQ6 N4 H16 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LQ6 InChI InChI 1.06 "InChI=1S/C21H19Cl2N5O4S/c22-14-4-3-12(8-15(14)23)28-6-5-27(20(31)16-9-18(29)26-21(32)25-16)11-17(28)19(30)24-10-13-2-1-7-33-13/h1-4,7-9,17H,5-6,10-11H2,(H,24,30)(H2,25,26,29,32)/t17-/m0/s1" LQ6 InChIKey InChI 1.06 PBLOKSLGZKWIQI-KRWDZBQOSA-N LQ6 SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(cc1Cl)N2CCN(C[C@H]2C(=O)NCc3sccc3)C(=O)C4=CC(=O)NC(=O)N4" LQ6 SMILES CACTVS 3.385 "Clc1ccc(cc1Cl)N2CCN(C[CH]2C(=O)NCc3sccc3)C(=O)C4=CC(=O)NC(=O)N4" LQ6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)CNC(=O)[C@@H]2CN(CCN2c3ccc(c(c3)Cl)Cl)C(=O)C4=CC(=O)NC(=O)N4" LQ6 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)CNC(=O)C2CN(CCN2c3ccc(c(c3)Cl)Cl)C(=O)C4=CC(=O)NC(=O)N4" # _pdbx_chem_comp_identifier.comp_id LQ6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-[[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-6-yl]carbonyl]-1-(3,4-dichlorophenyl)-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LQ6 "Create component" 2022-07-07 PDBE LQ6 "Modify descriptor" 2022-08-22 RCSB LQ6 "Initial release" 2022-09-28 RCSB #