data_LR1 # _chem_comp.id LR1 _chem_comp.name "(1R,2S,3S,4R,5R)-4-[(4-bromophenyl)methylamino]-5-(hydroxymethyl)cyclopentane-1,2,3-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 Br N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-01-17 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.190 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LR1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZJ8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LR1 CAH CAH C 0 1 Y N N -50.382 -33.112 27.856 -1.590 -1.307 -0.267 CAH LR1 1 LR1 CAF CAF C 0 1 Y N N -49.429 -34.054 27.427 -2.899 -1.056 -0.633 CAF LR1 2 LR1 CAM CAM C 0 1 Y N N -48.053 -33.750 27.448 -3.641 -0.113 0.056 CAM LR1 3 LR1 BR BR BR 0 0 N N N -46.711 -35.102 26.884 -5.432 0.231 -0.443 BR LR1 4 LR1 CAG CAG C 0 1 Y N N -47.618 -32.498 27.894 -3.072 0.577 1.111 CAG LR1 5 LR1 CAI CAI C 0 1 Y N N -48.557 -31.549 28.311 -1.763 0.326 1.476 CAI LR1 6 LR1 CAN CAN C 0 1 Y N N -49.930 -31.842 28.278 -1.022 -0.616 0.787 CAN LR1 7 LR1 CAK CAK C 0 1 N N N -50.855 -30.881 28.715 0.405 -0.891 1.186 CAK LR1 8 LR1 NAL NAL N 0 1 N N N -51.183 -29.794 27.773 1.303 0.001 0.439 NAL LR1 9 LR1 CAS CAS C 0 1 N N R -52.342 -29.053 28.313 2.705 -0.239 0.803 CAS LR1 10 LR1 CAQ CAQ C 0 1 N N S -52.344 -27.590 27.810 3.289 -1.375 -0.062 CAQ LR1 11 LR1 OAD OAD O 0 1 N N N -52.418 -26.681 28.896 3.264 -2.612 0.654 OAD LR1 12 LR1 CAO CAO C 0 1 N N S -53.618 -27.436 26.999 4.749 -0.935 -0.334 CAO LR1 13 LR1 OAB OAB O 0 1 N N N -53.435 -26.418 26.013 5.251 -1.552 -1.521 OAB LR1 14 LR1 CAP CAP C 0 1 N N R -53.722 -28.846 26.426 4.614 0.596 -0.526 CAP LR1 15 LR1 OAC OAC O 0 1 N N N -54.992 -29.104 25.862 5.857 1.245 -0.253 OAC LR1 16 LR1 CAR CAR C 0 1 N N R -53.649 -29.598 27.755 3.548 1.014 0.508 CAR LR1 17 LR1 CAJ CAJ C 0 1 N N N -53.599 -31.121 27.559 2.661 2.118 -0.071 CAJ LR1 18 LR1 OAA OAA O 0 1 N N N -53.822 -31.427 26.188 3.429 3.312 -0.232 OAA LR1 19 LR1 HAH HAH H 0 1 N N N -51.434 -33.354 27.862 -1.012 -2.046 -0.803 HAH LR1 20 LR1 HAF HAF H 0 1 N N N -49.756 -35.022 27.077 -3.342 -1.595 -1.457 HAF LR1 21 LR1 HAG HAG H 0 1 N N N -46.564 -32.265 27.916 -3.650 1.314 1.649 HAG LR1 22 LR1 HAI HAI H 0 1 N N N -48.224 -30.583 28.661 -1.319 0.865 2.300 HAI LR1 23 LR1 HAK1 HAK1 H 0 0 N N N -51.791 -31.406 28.956 0.524 -0.715 2.255 HAK1 LR1 24 LR1 HAK2 HAK2 H 0 0 N N N -50.449 -30.419 29.627 0.653 -1.928 0.959 HAK2 LR1 25 LR1 HAL HAL H 0 1 N N N -50.400 -29.178 27.680 1.165 -0.098 -0.556 HAL LR1 26 LR1 HAS HAS H 0 1 N N N -52.352 -29.077 29.413 2.778 -0.499 1.859 HAS LR1 27 LR1 HAQ HAQ H 0 1 N N N -51.462 -27.407 27.179 2.735 -1.466 -0.997 HAQ LR1 28 LR1 HAR HAR H 0 1 N N N -54.494 -29.321 28.403 4.030 1.363 1.421 HAR LR1 29 LR1 HAD HAD H 0 1 N N N -52.418 -25.791 28.565 3.619 -3.361 0.157 HAD LR1 30 LR1 HAO HAO H 0 1 N N N -54.473 -27.223 27.657 5.387 -1.166 0.520 HAO LR1 31 LR1 HAB HAB H 0 1 N N N -54.232 -26.321 25.505 5.279 -2.518 -1.480 HAB LR1 32 LR1 HAP HAP H 0 1 N N N -52.878 -29.090 25.764 4.278 0.825 -1.537 HAP LR1 33 LR1 HAC HAC H 0 1 N N N -55.013 -29.990 25.519 6.579 0.975 -0.837 HAC LR1 34 LR1 HAJ1 HAJ1 H 0 0 N N N -52.612 -31.498 27.864 2.274 1.802 -1.040 HAJ1 LR1 35 LR1 HAJ2 HAJ2 H 0 0 N N N -54.378 -31.596 28.173 1.829 2.309 0.607 HAJ2 LR1 36 LR1 HAA HAA H 0 1 N N N -53.792 -32.368 26.064 2.930 4.056 -0.596 HAA LR1 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LR1 CAH CAF SING Y N 1 LR1 CAH CAN DOUB Y N 2 LR1 CAF CAM DOUB Y N 3 LR1 CAM BR SING N N 4 LR1 CAM CAG SING Y N 5 LR1 CAG CAI DOUB Y N 6 LR1 CAI CAN SING Y N 7 LR1 CAN CAK SING N N 8 LR1 CAK NAL SING N N 9 LR1 NAL CAS SING N N 10 LR1 CAS CAQ SING N N 11 LR1 CAS CAR SING N N 12 LR1 CAQ OAD SING N N 13 LR1 CAQ CAO SING N N 14 LR1 CAO OAB SING N N 15 LR1 CAO CAP SING N N 16 LR1 CAP OAC SING N N 17 LR1 CAP CAR SING N N 18 LR1 CAR CAJ SING N N 19 LR1 CAJ OAA SING N N 20 LR1 CAH HAH SING N N 21 LR1 CAF HAF SING N N 22 LR1 CAG HAG SING N N 23 LR1 CAI HAI SING N N 24 LR1 CAK HAK1 SING N N 25 LR1 CAK HAK2 SING N N 26 LR1 NAL HAL SING N N 27 LR1 CAS HAS SING N N 28 LR1 CAQ HAQ SING N N 29 LR1 CAR HAR SING N N 30 LR1 OAD HAD SING N N 31 LR1 CAO HAO SING N N 32 LR1 OAB HAB SING N N 33 LR1 CAP HAP SING N N 34 LR1 OAC HAC SING N N 35 LR1 CAJ HAJ1 SING N N 36 LR1 CAJ HAJ2 SING N N 37 LR1 OAA HAA SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LR1 SMILES ACDLabs 12.01 "Brc1ccc(cc1)CNC2C(C(O)C(O)C2O)CO" LR1 InChI InChI 1.03 "InChI=1S/C13H18BrNO4/c14-8-3-1-7(2-4-8)5-15-10-9(6-16)11(17)13(19)12(10)18/h1-4,9-13,15-19H,5-6H2/t9-,10+,11+,12-,13-/m0/s1" LR1 InChIKey InChI 1.03 BSQKACVWQISROJ-QWQWKMKNSA-N LR1 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1NCc2ccc(Br)cc2" LR1 SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]1NCc2ccc(Br)cc2" LR1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1CN[C@@H]2[C@@H]([C@H]([C@@H]([C@H]2O)O)O)CO)Br" LR1 SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1CNC2C(C(C(C2O)O)O)CO)Br" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LR1 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,3S,4R,5R)-4-[(4-bromobenzyl)amino]-5-(hydroxymethyl)cyclopentane-1,2,3-triol" LR1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(1R,2S,3S,4R,5R)-4-[(4-bromophenyl)methylamino]-5-(hydroxymethyl)cyclopentane-1,2,3-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LR1 "Create component" 2013-01-17 EBI LR1 "Initial release" 2014-02-05 RCSB LR1 "Modify descriptor" 2014-09-05 RCSB #