data_LR4 # _chem_comp.id LR4 _chem_comp.name "(4~{S})-2-azanyl-4-[3-[6-[(2~{S})-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 N7 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(4S)-2-azanyl-4-[3-[6-[(2S)-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-11 _chem_comp.pdbx_modified_date 2023-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LR4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AZR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LR4 C4 C1 C 0 1 N N S 18.020 0.054 6.123 -3.338 -1.285 -0.770 C4 LR4 1 LR4 C5 C2 C 0 1 Y N N 16.138 0.297 4.424 -5.089 0.012 0.495 C5 LR4 2 LR4 C6 C3 C 0 1 Y N N 17.160 -0.427 4.956 -3.989 -0.006 -0.266 C6 LR4 3 LR4 C7 C4 C 0 1 Y N N 17.270 -1.713 4.352 -3.492 1.328 -0.554 C7 LR4 4 LR4 C8 C5 C 0 1 Y N N 16.316 -1.940 3.362 -4.247 2.319 0.008 C8 LR4 5 LR4 C10 C6 C 0 1 N N N 17.668 -0.756 7.385 -3.696 -1.498 -2.242 C10 LR4 6 LR4 C17 C7 C 0 1 Y N N 22.831 -1.113 6.090 1.276 -0.664 1.029 C17 LR4 7 LR4 C20 C8 C 0 1 Y N N 25.255 -2.137 6.839 3.408 -0.191 2.665 C20 LR4 8 LR4 C21 C9 C 0 1 Y N N 24.106 -2.577 7.470 2.142 -0.231 3.221 C21 LR4 9 LR4 C22 C10 C 0 1 Y N N 22.878 -2.068 7.098 1.059 -0.472 2.389 C22 LR4 10 LR4 C26 C11 C 0 1 N N S 26.095 0.393 4.110 4.760 -0.564 -0.725 C26 LR4 11 LR4 C1 C12 C 0 1 N N N 15.679 1.644 4.901 -5.830 -1.228 0.957 C1 LR4 12 LR4 C11 C13 C 0 1 Y N N 19.503 -0.111 5.760 -1.841 -1.184 -0.623 C11 LR4 13 LR4 C14 C14 C 0 1 Y N N 21.532 -0.536 5.685 0.124 -0.923 0.130 C14 LR4 14 LR4 C19 C15 C 0 1 Y N N 25.128 -1.160 5.816 3.556 -0.381 1.293 C19 LR4 15 LR4 C2 C16 C 0 1 N N N 16.252 1.915 6.300 -5.387 -2.415 0.097 C2 LR4 16 LR4 C23 C17 C 0 1 N N N 18.258 -2.697 4.673 -2.327 1.580 -1.348 C23 LR4 17 LR4 C27 C18 C 0 1 N N N 26.962 0.206 2.848 6.179 -0.593 -1.298 C27 LR4 18 LR4 C29 C19 C 0 1 N N N 28.372 -1.423 4.028 6.918 0.899 0.459 C29 LR4 19 LR4 C3 C20 C 0 1 N N N 17.737 1.563 6.354 -3.856 -2.461 0.060 C3 LR4 20 LR4 C30 C21 C 0 1 N N N 27.598 -1.224 5.339 5.499 0.928 1.032 C30 LR4 21 LR4 C31 C22 C 0 1 N N N 29.238 -0.274 2.017 8.194 0.718 -1.591 C31 LR4 22 LR4 C32 C23 C 0 1 N N N 26.353 1.740 4.768 3.967 0.569 -1.380 C32 LR4 23 LR4 N13 N1 N 0 1 Y N N 21.348 0.178 4.607 0.183 -1.218 -1.143 N13 LR4 24 LR4 N15 N2 N 0 1 Y N N 20.390 -0.742 6.440 -1.184 -0.902 0.474 N15 LR4 25 LR4 N16 N3 N 0 1 N N N 16.137 -3.044 2.608 -3.987 3.673 -0.117 N16 LR4 26 LR4 N18 N4 N 0 1 Y N N 23.926 -0.661 5.454 2.504 -0.614 0.526 N18 LR4 27 LR4 N24 N5 N 0 1 N N N 19.061 -3.489 4.886 -1.403 1.779 -1.977 N24 LR4 28 LR4 N25 N6 N 0 1 N N N 26.234 -0.710 5.085 4.824 -0.342 0.726 N25 LR4 29 LR4 N28 N7 N 0 1 N N N 28.371 -0.162 3.227 6.853 0.677 -0.992 N28 LR4 30 LR4 O12 O1 O 0 1 Y N N 19.953 0.474 4.646 -0.934 -1.372 -1.588 O12 LR4 31 LR4 S9 S1 S 0 1 Y N N 15.290 -0.564 3.175 -5.551 1.661 0.882 S9 LR4 32 LR4 H1 H1 H 0 1 N N N 18.286 -0.411 8.227 -4.779 -1.565 -2.346 H1 LR4 33 LR4 H2 H2 H 0 1 N N N 16.605 -0.612 7.628 -3.326 -0.659 -2.831 H2 LR4 34 LR4 H3 H3 H 0 1 N N N 17.861 -1.823 7.201 -3.238 -2.421 -2.597 H3 LR4 35 LR4 H4 H4 H 0 1 N N N 26.223 -2.526 7.117 4.272 -0.013 3.287 H4 LR4 36 LR4 H5 H5 H 0 1 N N N 24.169 -3.318 8.253 2.001 -0.087 4.282 H5 LR4 37 LR4 H6 H6 H 0 1 N N N 21.973 -2.405 7.581 0.057 -0.509 2.793 H6 LR4 38 LR4 H7 H7 H 0 1 N N N 25.048 0.400 3.772 4.267 -1.516 -0.925 H7 LR4 39 LR4 H8 H8 H 0 1 N N N 16.031 2.419 4.204 -5.594 -1.426 2.003 H8 LR4 40 LR4 H9 H9 H 0 1 N N N 14.580 1.662 4.945 -6.903 -1.075 0.844 H9 LR4 41 LR4 H10 H10 H 0 1 N N N 16.125 2.980 6.542 -5.769 -3.340 0.528 H10 LR4 42 LR4 H11 H11 H 0 1 N N N 15.709 1.304 7.037 -5.772 -2.296 -0.915 H11 LR4 43 LR4 H12 H12 H 0 1 N N N 26.975 1.145 2.275 6.735 -1.417 -0.850 H12 LR4 44 LR4 H13 H13 H 0 1 N N N 26.532 -0.596 2.229 6.132 -0.729 -2.378 H13 LR4 45 LR4 H14 H14 H 0 1 N N N 27.896 -2.224 3.444 7.410 1.851 0.660 H14 LR4 46 LR4 H15 H15 H 0 1 N N N 29.410 -1.705 4.259 7.482 0.092 0.927 H15 LR4 47 LR4 H16 H16 H 0 1 N N N 18.126 1.844 7.344 -3.531 -3.398 -0.393 H16 LR4 48 LR4 H17 H17 H 0 1 N N N 18.261 2.139 5.577 -3.465 -2.391 1.075 H17 LR4 49 LR4 H18 H18 H 0 1 N N N 27.526 -2.189 5.862 5.545 1.064 2.112 H18 LR4 50 LR4 H19 H19 H 0 1 N N N 28.140 -0.504 5.970 4.943 1.752 0.585 H19 LR4 51 LR4 H20 H20 H 0 1 N N N 30.260 -0.543 2.321 8.111 0.618 -2.673 H20 LR4 52 LR4 H21 H21 H 0 1 N N N 28.837 -1.051 1.350 8.671 1.668 -1.349 H21 LR4 53 LR4 H22 H22 H 0 1 N N N 29.255 0.690 1.488 8.794 -0.101 -1.195 H22 LR4 54 LR4 H23 H23 H 0 1 N N N 25.720 1.839 5.662 4.461 1.520 -1.181 H23 LR4 55 LR4 H24 H24 H 0 1 N N N 27.412 1.809 5.059 3.920 0.403 -2.457 H24 LR4 56 LR4 H25 H25 H 0 1 N N N 26.114 2.546 4.059 2.957 0.590 -0.971 H25 LR4 57 LR4 H26 H26 H 0 1 N N N 15.365 -2.903 1.988 -3.223 3.974 -0.633 H26 LR4 58 LR4 H27 H27 H 0 1 N N N 16.965 -3.222 2.075 -4.568 4.320 0.312 H27 LR4 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LR4 C31 N28 SING N N 1 LR4 N16 C8 SING N N 2 LR4 C27 N28 SING N N 3 LR4 C27 C26 SING N N 4 LR4 S9 C8 SING Y N 5 LR4 S9 C5 SING Y N 6 LR4 N28 C29 SING N N 7 LR4 C8 C7 DOUB Y N 8 LR4 C29 C30 SING N N 9 LR4 C26 C32 SING N N 10 LR4 C26 N25 SING N N 11 LR4 C7 C23 SING N N 12 LR4 C7 C6 SING Y N 13 LR4 C5 C1 SING N N 14 LR4 C5 C6 DOUB Y N 15 LR4 N13 O12 SING Y N 16 LR4 N13 C14 DOUB Y N 17 LR4 O12 C11 SING Y N 18 LR4 C23 N24 TRIP N N 19 LR4 C1 C2 SING N N 20 LR4 C6 C4 SING N N 21 LR4 N25 C30 SING N N 22 LR4 N25 C19 SING N N 23 LR4 N18 C19 DOUB Y N 24 LR4 N18 C17 SING Y N 25 LR4 C14 C17 SING N N 26 LR4 C14 N15 SING Y N 27 LR4 C11 C4 SING N N 28 LR4 C11 N15 DOUB Y N 29 LR4 C19 C20 SING Y N 30 LR4 C17 C22 DOUB Y N 31 LR4 C4 C3 SING N N 32 LR4 C4 C10 SING N N 33 LR4 C2 C3 SING N N 34 LR4 C20 C21 DOUB Y N 35 LR4 C22 C21 SING Y N 36 LR4 C10 H1 SING N N 37 LR4 C10 H2 SING N N 38 LR4 C10 H3 SING N N 39 LR4 C20 H4 SING N N 40 LR4 C21 H5 SING N N 41 LR4 C22 H6 SING N N 42 LR4 C26 H7 SING N N 43 LR4 C1 H8 SING N N 44 LR4 C1 H9 SING N N 45 LR4 C2 H10 SING N N 46 LR4 C2 H11 SING N N 47 LR4 C27 H12 SING N N 48 LR4 C27 H13 SING N N 49 LR4 C29 H14 SING N N 50 LR4 C29 H15 SING N N 51 LR4 C3 H16 SING N N 52 LR4 C3 H17 SING N N 53 LR4 C30 H18 SING N N 54 LR4 C30 H19 SING N N 55 LR4 C31 H20 SING N N 56 LR4 C31 H21 SING N N 57 LR4 C31 H22 SING N N 58 LR4 C32 H23 SING N N 59 LR4 C32 H24 SING N N 60 LR4 C32 H25 SING N N 61 LR4 N16 H26 SING N N 62 LR4 N16 H27 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LR4 InChI InChI 1.06 "InChI=1S/C23H27N7OS/c1-14-13-29(3)10-11-30(14)18-8-4-6-16(26-18)21-27-22(31-28-21)23(2)9-5-7-17-19(23)15(12-24)20(25)32-17/h4,6,8,14H,5,7,9-11,13,25H2,1-3H3/t14-,23-/m0/s1" LR4 InChIKey InChI 1.06 YZNVUBRDUJUVPB-PSLXWICFSA-N LR4 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CN(C)CCN1c2cccc(n2)c3noc(n3)[C@@]4(C)CCCc5sc(N)c(C#N)c45" LR4 SMILES CACTVS 3.385 "C[CH]1CN(C)CCN1c2cccc(n2)c3noc(n3)[C]4(C)CCCc5sc(N)c(C#N)c45" LR4 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1CN(CCN1c2cccc(n2)c3nc(on3)[C@]4(CCCc5c4c(c(s5)N)C#N)C)C" LR4 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CN(CCN1c2cccc(n2)c3nc(on3)C4(CCCc5c4c(c(s5)N)C#N)C)C" # _pdbx_chem_comp_identifier.comp_id LR4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(4~{S})-2-azanyl-4-[3-[6-[(2~{S})-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LR4 _pdbx_chem_comp_synonyms.name "(4S)-2-azanyl-4-[3-[6-[(2S)-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LR4 "Create component" 2022-09-12 PDBE LR4 "Initial release" 2023-06-07 RCSB #