data_LRM # _chem_comp.id LRM _chem_comp.name "2-amino-9-[(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(S)-({(2R,3R,4R,5R)-3-{[(R)-{[(2R,3R,4R,5R)-3-{[(S)-{[(2R,3R,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-3-{[(S)-hydroxy{[(2R,3R,4R,5R)-3-hydroxy-4-methoxy-5-(3-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methoxy}phosphoryl]oxy}-4-methoxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}-5-(6-amino-9H-purin-9-yl)-4-methoxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}-5-[6-(dimethylamino)-9H-purin-9-yl]-4-methoxytetrahydrofuran-2-yl}methoxy)(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2-yl]-7-methyl-6-oxo-6,9-dihydro-3H-purin-7-ium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C56 H79 N20 O38 P6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2019-03-13 _chem_comp.pdbx_modified_date 2019-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1826.180 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LRM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6O7Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LRM C1 C1 C 0 1 N N N -36.126 -15.461 9.671 -8.595 7.989 7.939 C1 LRM 1 LRM C2 C2 C 0 1 Y N N -35.797 -13.015 9.610 -7.318 6.939 6.267 C2 LRM 2 LRM C3 C3 C 0 1 Y N N -35.649 -10.587 9.487 -7.276 8.064 4.252 C3 LRM 3 LRM N4 N1 N 0 1 Y N N -32.319 -12.005 9.154 -5.319 5.002 4.081 N4 LRM 4 LRM C5 C4 C 0 1 Y N N -34.320 -13.032 9.479 -6.498 5.945 5.705 C5 LRM 5 LRM C6 C5 C 0 1 Y N N -32.161 -13.366 9.260 -5.259 4.237 5.208 C6 LRM 6 LRM C7 C6 C 0 1 N N R -31.280 -11.012 8.803 -4.670 4.711 2.800 C7 LRM 7 LRM C8 C7 C 0 1 N N R -30.843 -10.083 9.941 -3.314 5.438 2.723 C8 LRM 8 LRM C9 C8 C 0 1 N N N -31.354 -7.739 9.963 -3.720 7.667 1.940 C9 LRM 9 LRM N11 N2 N 0 1 N N N -34.351 -14.199 16.440 12.136 -0.267 -7.370 N11 LRM 10 LRM O12 O1 O 0 1 N N N -36.876 -11.726 21.718 6.751 -6.720 2.392 O12 LRM 11 LRM C13 C9 C 0 1 N N R -33.493 -9.187 13.152 3.601 7.236 -2.250 C13 LRM 12 LRM C14 C10 C 0 1 Y N N -32.889 -11.672 13.212 3.984 9.359 -0.942 C14 LRM 13 LRM O15 O2 O 0 1 N N N -38.474 -13.903 23.445 5.131 -8.281 5.126 O15 LRM 14 LRM C16 C11 C 0 1 Y N N -34.812 -12.630 13.145 4.683 10.712 -2.486 C16 LRM 15 LRM C17 C12 C 0 1 Y N N -35.984 -13.459 13.097 5.152 11.765 -3.290 C17 LRM 16 LRM O18 O3 O 0 1 N N N -32.755 -9.077 22.060 9.492 -2.910 1.538 O18 LRM 17 LRM C19 C13 C 0 1 N N R -33.701 -8.533 14.520 4.848 6.334 -2.167 C19 LRM 18 LRM C20 C14 C 0 1 N N N -35.396 -6.847 14.623 5.831 6.237 -4.351 C20 LRM 19 LRM C22 C15 C 0 1 N N N -33.291 -7.053 18.780 7.397 0.952 -0.625 C22 LRM 20 LRM C23 C16 C 0 1 N N R -34.726 -7.496 18.923 7.438 -0.294 -1.512 C23 LRM 21 LRM O24 O4 O 0 1 N N N -27.253 -15.138 6.853 -4.086 -1.667 1.007 O24 LRM 22 LRM C26 C17 C 0 1 N N N -33.792 -11.934 16.993 10.116 -1.370 -6.641 C26 LRM 23 LRM C27 C18 C 0 1 N N N -34.737 -12.999 16.873 11.203 -0.508 -6.389 C27 LRM 24 LRM C28 C19 C 0 1 N N N -36.509 -11.597 17.541 10.422 -0.157 -4.243 C28 LRM 25 LRM C29 C20 C 0 1 N N R -36.341 -9.070 19.587 9.091 -1.948 -2.195 C29 LRM 26 LRM C30 C21 C 0 1 N N N -38.702 -8.806 19.882 9.852 -4.109 -2.899 C30 LRM 27 LRM C31 C22 C 0 1 N N R -34.988 -8.518 20.019 8.436 -1.327 -0.941 C31 LRM 28 LRM C32 C23 C 0 1 N N N -36.329 -9.978 23.311 7.314 -4.468 3.150 C32 LRM 29 LRM O36 O5 O 0 1 N N N -29.291 -13.801 6.257 -2.798 -1.189 3.125 O36 LRM 30 LRM P3 P1 P 0 1 N N N -28.489 -14.281 7.404 -2.928 -0.792 1.705 P3 LRM 31 LRM O35 O6 O 0 1 N N N -29.161 -15.044 8.485 -1.531 -1.047 0.946 O35 LRM 32 LRM P4 P2 P 0 1 N N N -27.063 -16.702 6.616 -4.529 -3.212 1.099 P4 LRM 33 LRM O34 O7 O 0 1 N N N -28.332 -17.332 6.181 -3.477 -4.122 0.287 O34 LRM 34 LRM O33 O8 O 0 1 N N N -25.894 -16.892 5.649 -4.554 -3.635 2.518 O33 LRM 35 LRM O25 O9 O 0 1 N N N -26.586 -17.189 8.057 -5.996 -3.388 0.461 O25 LRM 36 LRM P5 P3 P 0 1 N N N -26.410 -18.592 8.792 -7.145 -4.509 0.591 P5 LRM 37 LRM O32 O10 O 0 1 N N N -26.829 -19.723 7.929 -7.318 -4.876 2.014 O32 LRM 38 LRM O27 O11 O 0 1 N N N -24.804 -18.689 9.135 -8.531 -3.925 0.015 O27 LRM 39 LRM C45 C24 C 0 1 N N N -24.212 -18.049 10.287 -9.766 -4.641 0.085 C45 LRM 40 LRM C46 C25 C 0 1 N N R -23.022 -17.235 9.845 -10.878 -3.804 -0.550 C46 LRM 41 LRM C55 C26 C 0 1 N N S -23.314 -15.985 9.022 -12.238 -4.522 -0.409 C55 LRM 42 LRM O31 O12 O 0 1 N N N -23.707 -14.876 9.825 -12.970 -3.993 0.698 O31 LRM 43 LRM C54 C27 C 0 1 N N R -21.987 -15.775 8.287 -12.966 -4.211 -1.737 C54 LRM 44 LRM O30 O13 O 0 1 N N N -20.988 -15.148 9.086 -14.170 -3.481 -1.489 O30 LRM 45 LRM C47 C28 C 0 1 N N R -21.563 -17.222 8.008 -11.959 -3.343 -2.523 C47 LRM 46 LRM N15 N3 N 0 1 Y N N -21.929 -17.714 6.680 -12.010 -3.668 -3.950 N15 LRM 47 LRM C50 C29 C 0 1 Y N N -21.179 -17.514 5.469 -12.877 -3.150 -4.863 C50 LRM 48 LRM N19 N4 N 0 1 N N N -20.093 -16.689 5.230 -13.904 -2.243 -4.811 N19 LRM 49 LRM C53 C30 C 0 1 N N N -19.599 -16.773 3.916 -14.602 -1.925 -5.933 C53 LRM 50 LRM N18 N5 N 0 1 N N N -18.506 -16.087 3.576 -15.620 -1.015 -5.839 N18 LRM 51 LRM N17 N6 N 0 1 N N N -20.159 -17.575 2.955 -14.336 -2.459 -7.106 N17 LRM 52 LRM C52 C31 C 0 1 N N N -21.257 -18.403 3.147 -13.350 -3.357 -7.257 C52 LRM 53 LRM O29 O14 O 0 1 N N N -21.675 -19.050 2.180 -13.113 -3.845 -8.351 O29 LRM 54 LRM C51 C32 C 0 1 Y N N -21.792 -18.366 4.503 -12.562 -3.739 -6.081 C51 LRM 55 LRM N16 N7 N 1 1 Y N N -22.864 -19.009 5.158 -11.528 -4.584 -5.866 N16 LRM 56 LRM C49 C33 C 0 1 N N N -23.830 -19.935 4.557 -10.880 -5.410 -6.888 C49 LRM 57 LRM C48 C34 C 0 1 Y N N -22.895 -18.599 6.417 -11.195 -4.541 -4.608 C48 LRM 58 LRM O28 O15 O 0 1 N N N -22.171 -18.038 8.998 -10.666 -3.686 -1.974 O28 LRM 59 LRM O26 O16 O 0 1 N N N -27.167 -18.496 10.130 -6.721 -5.813 -0.252 O26 LRM 60 LRM O23 O17 O 0 1 N N N -27.720 -13.028 8.037 -3.309 0.770 1.617 O23 LRM 61 LRM C44 C35 C 0 1 N N N -28.069 -12.527 9.346 -2.533 1.796 2.238 C44 LRM 62 LRM C43 C36 C 0 1 N N R -28.982 -11.341 9.174 -3.172 3.158 1.959 C43 LRM 63 LRM O37 O18 O 0 1 N N N -30.122 -11.704 8.363 -4.405 3.302 2.695 O37 LRM 64 LRM C4 C37 C 0 1 Y N N -33.659 -11.747 9.316 -6.099 6.094 4.366 C4 LRM 65 LRM N2 N8 N 0 1 Y N N -34.304 -10.505 9.322 -6.508 7.159 3.684 N2 LRM 66 LRM N1 N9 N 0 1 Y N N -36.415 -11.724 9.623 -7.677 7.968 5.506 N1 LRM 67 LRM N3 N10 N 0 1 Y N N -33.318 -14.037 9.452 -5.951 4.792 6.160 N3 LRM 68 LRM N N11 N 0 1 N N N -36.596 -14.065 9.660 -7.748 6.844 7.579 N LRM 69 LRM C C38 C 0 1 N N N -38.066 -13.958 9.638 -6.608 6.722 8.498 C LRM 70 LRM C10 C39 C 0 1 N N R -29.594 -10.798 10.459 -2.284 4.301 2.513 C10 LRM 71 LRM O O19 O 0 1 N N N -30.564 -8.787 9.420 -3.293 6.342 1.616 O LRM 72 LRM O1 O20 O 0 1 N N N -28.647 -9.861 11.015 -1.290 4.683 1.560 O1 LRM 73 LRM P P4 P 0 1 N N N -28.056 -9.902 12.503 0.280 4.754 1.912 P LRM 74 LRM O22 O21 O 0 1 N N N -26.673 -9.365 12.575 0.723 3.452 2.456 O22 LRM 75 LRM O21 O22 O 0 1 N N N -28.228 -11.345 13.033 0.533 5.908 3.006 O21 LRM 76 LRM O2 O23 O 0 1 N N N -29.085 -8.941 13.290 1.114 5.090 0.576 O2 LRM 77 LRM C11 C40 C 0 1 N N N -30.143 -9.487 14.101 2.542 5.118 0.537 C11 LRM 78 LRM C12 C41 C 0 1 N N R -31.364 -8.612 13.989 3.006 5.468 -0.878 C12 LRM 79 LRM C21 C42 C 0 1 N N R -32.331 -8.789 15.149 4.550 5.383 -0.983 C21 LRM 80 LRM O4 O24 O 0 1 N N N -34.034 -7.159 14.357 5.009 5.591 -3.377 O4 LRM 81 LRM N5 N12 N 0 1 Y N N -33.771 -10.626 13.117 3.991 8.640 -2.100 N5 LRM 82 LRM C15 C43 C 0 1 Y N N -35.012 -11.176 13.072 4.431 9.472 -3.098 C15 LRM 83 LRM N9 N13 N 0 1 Y N N -36.270 -10.559 12.967 4.641 9.342 -4.404 N9 LRM 84 LRM C18 C44 C 0 1 Y N N -37.291 -11.460 12.933 5.081 10.357 -5.117 C18 LRM 85 LRM N8 N14 N 0 1 Y N N -37.235 -12.846 12.986 5.333 11.540 -4.587 N8 LRM 86 LRM N7 N15 N 0 1 N N N -35.952 -14.834 13.157 5.420 13.008 -2.743 N7 LRM 87 LRM N6 N16 N 0 1 Y N N -33.444 -12.899 13.238 4.391 10.574 -1.171 N6 LRM 88 LRM O3 O25 O 0 1 N N N -32.129 -8.977 12.816 2.724 6.852 -1.179 O3 LRM 89 LRM O5 O26 O 0 1 N N N -31.959 -7.847 16.175 4.969 4.050 -1.281 O5 LRM 90 LRM P1 P5 P 0 1 N N N -31.234 -8.291 17.536 6.066 3.259 -0.407 P1 LRM 91 LRM O20 O27 O 0 1 N N N -30.652 -9.656 17.507 7.307 4.062 -0.328 O20 LRM 92 LRM O19 O28 O 0 1 N N N -30.234 -7.184 17.917 5.492 3.010 1.076 O19 LRM 93 LRM O6 O29 O 0 1 N N N -32.447 -8.208 18.577 6.387 1.843 -1.103 O6 LRM 94 LRM O9 O30 O 0 1 N N N -37.425 -8.184 19.833 8.826 -3.351 -2.255 O9 LRM 95 LRM C24 C45 C 0 1 N N R -36.104 -9.196 18.078 8.412 -1.217 -3.375 C24 LRM 96 LRM N10 N17 N 0 1 N N N -35.599 -10.532 17.650 9.377 -0.979 -4.451 N10 LRM 97 LRM O8 O31 O 0 1 N N N -37.697 -11.410 17.817 10.555 0.382 -3.156 O8 LRM 98 LRM N12 N18 N 0 1 N N N -36.040 -12.818 17.155 11.320 0.069 -5.200 N12 LRM 99 LRM C25 C46 C 0 1 N N N -34.256 -10.734 17.384 9.212 -1.591 -5.657 C25 LRM 100 LRM O7 O32 O 0 1 N N N -35.150 -8.198 17.732 7.956 0.035 -2.819 O7 LRM 101 LRM O10 O33 O 0 1 N N N -35.011 -8.006 21.368 7.746 -2.327 -0.189 O10 LRM 102 LRM P2 P6 P 0 1 N N N -34.111 -8.707 22.539 8.051 -2.622 1.364 P2 LRM 103 LRM O17 O34 O 0 1 N N N -34.133 -7.782 23.777 7.651 -1.334 2.243 O17 LRM 104 LRM O11 O35 O 0 1 N N N -34.950 -10.066 22.892 7.188 -3.891 1.849 O11 LRM 105 LRM C33 C47 C 0 1 N N R -37.020 -11.301 23.092 6.354 -5.652 3.279 C33 LRM 106 LRM C42 C48 C 0 1 N N R -36.523 -12.482 23.922 6.441 -6.263 4.695 C42 LRM 107 LRM O16 O36 O 0 1 N N N -37.019 -12.435 25.255 5.377 -5.777 5.516 O16 LRM 108 LRM C40 C49 C 0 1 N N R -37.113 -13.638 23.113 6.291 -7.782 4.459 C40 LRM 109 LRM C41 C50 C 0 1 N N N -38.907 -15.240 23.204 5.380 -8.751 6.452 C41 LRM 110 LRM C34 C51 C 0 1 N N R -37.017 -13.136 21.662 6.132 -7.910 2.927 C34 LRM 111 LRM N13 N19 N 0 1 N N N -35.902 -13.709 20.871 6.822 -9.107 2.441 N13 LRM 112 LRM C37 C52 C 0 1 N N N -34.697 -13.041 20.750 8.176 -9.222 2.602 C37 LRM 113 LRM C38 C53 C 0 1 N N N -33.643 -13.596 20.129 8.811 -10.325 2.154 C38 LRM 114 LRM C39 C54 C 0 1 N N N -33.739 -14.919 19.565 8.059 -11.345 1.523 C39 LRM 115 LRM O14 O37 O 0 1 N N N -32.828 -15.492 18.963 8.611 -12.348 1.107 O14 LRM 116 LRM N14 N20 N 0 1 N N N -34.984 -15.552 19.717 6.726 -11.194 1.384 N14 LRM 117 LRM C36 C55 C 0 1 N N N -35.111 -16.946 19.270 5.937 -12.243 0.733 C36 LRM 118 LRM C35 C56 C 0 1 N N N -36.100 -14.971 20.340 6.117 -10.086 1.844 C35 LRM 119 LRM O13 O38 O 0 1 N N N -37.178 -15.544 20.377 4.915 -9.963 1.712 O13 LRM 120 LRM H1 H1 H 0 1 N N N -36.991 -16.139 9.716 -9.468 8.015 7.287 H1 LRM 121 LRM H2 H2 H 0 1 N N N -35.550 -15.661 8.755 -8.918 7.890 8.976 H2 LRM 122 LRM H3 H3 H 0 1 N N N -35.485 -15.625 10.550 -8.027 8.912 7.823 H3 LRM 123 LRM H4 H4 H 0 1 N N N -36.182 -9.648 9.515 -7.590 8.918 3.670 H4 LRM 124 LRM H5 H5 H 0 1 N N N -31.200 -13.855 9.196 -4.717 3.307 5.298 H5 LRM 125 LRM H6 H6 H 0 1 N N N -31.661 -10.384 7.984 -5.310 5.032 1.979 H6 LRM 126 LRM H7 H7 H 0 1 N N N -31.616 -10.051 10.723 -3.112 5.969 3.654 H7 LRM 127 LRM H8 H8 H 0 1 N N N -31.065 -6.784 9.500 -4.743 7.639 2.313 H8 LRM 128 LRM H9 H9 H 0 1 N N N -32.417 -7.938 9.760 -3.065 8.082 2.706 H9 LRM 129 LRM H10 H10 H 0 1 N N N -31.192 -7.683 11.050 -3.675 8.291 1.048 H10 LRM 130 LRM H11 H11 H 0 1 N N N -35.023 -14.932 16.333 12.048 -0.691 -8.238 H11 LRM 131 LRM H12 H12 H 0 1 N N N -33.390 -14.366 16.222 12.883 0.327 -7.194 H12 LRM 132 LRM H13 H13 H 0 1 N N N -34.139 -8.677 12.423 3.102 7.091 -3.208 H13 LRM 133 LRM H14 H14 H 0 1 N N N -31.821 -11.522 13.263 3.682 8.978 0.023 H14 LRM 134 LRM H15 H15 H 0 1 N N N -34.479 -9.073 15.080 5.738 6.931 -1.964 H15 LRM 135 LRM H16 H16 H 0 1 N N N -35.562 -5.770 14.473 6.827 6.398 -3.938 H16 LRM 136 LRM H17 H17 H 0 1 N N N -36.043 -7.416 13.939 5.904 5.609 -5.239 H17 LRM 137 LRM H18 H18 H 0 1 N N N -35.637 -7.114 15.663 5.390 7.197 -4.620 H18 LRM 138 LRM H19 H19 H 0 1 N N N -32.977 -6.526 19.693 7.170 0.662 0.400 H19 LRM 139 LRM H20 H20 H 0 1 N N N -33.201 -6.377 17.917 8.366 1.452 -0.655 H20 LRM 140 LRM H21 H21 H 0 1 N N N -35.363 -6.615 19.091 6.444 -0.733 -1.594 H21 LRM 141 LRM H22 H22 H 0 1 N N N -32.745 -12.087 16.778 10.004 -1.844 -7.605 H22 LRM 142 LRM H23 H23 H 0 1 N N N -36.511 -10.062 20.031 10.165 -1.763 -2.196 H23 LRM 143 LRM H24 H24 H 0 1 N N N -39.473 -8.046 20.076 9.972 -3.760 -3.925 H24 LRM 144 LRM H25 H25 H 0 1 N N N -38.907 -9.299 18.920 10.791 -3.982 -2.360 H25 LRM 145 LRM H26 H26 H 0 1 N N N -38.714 -9.555 20.688 9.576 -5.163 -2.905 H26 LRM 146 LRM H27 H27 H 0 1 N N N -34.239 -9.320 19.939 9.186 -0.832 -0.324 H27 LRM 147 LRM H28 H28 H 0 1 N N N -36.369 -9.718 24.379 8.338 -4.812 3.297 H28 LRM 148 LRM H29 H29 H 0 1 N N N -36.839 -9.199 22.725 7.071 -3.719 3.904 H29 LRM 149 LRM H30 H30 H 0 1 N N N -30.086 -15.131 8.284 -1.544 -0.809 0.009 H30 LRM 150 LRM H31 H31 H 0 1 N N N -28.202 -17.763 5.345 -3.409 -3.900 -0.652 H31 LRM 151 LRM H32 H32 H 0 1 N N N -24.953 -17.389 10.763 -9.669 -5.585 -0.452 H32 LRM 152 LRM H33 H33 H 0 1 N N N -23.887 -18.815 11.007 -10.012 -4.840 1.128 H33 LRM 153 LRM H34 H34 H 0 1 N N N -22.459 -16.932 10.740 -10.919 -2.817 -0.090 H34 LRM 154 LRM H35 H35 H 0 1 N N N -24.096 -16.218 8.284 -12.094 -5.596 -0.293 H35 LRM 155 LRM H36 H36 H 0 1 N N N -24.534 -15.070 10.251 -13.833 -4.408 0.834 H36 LRM 156 LRM H37 H37 H 0 1 N N N -22.154 -15.237 7.342 -13.183 -5.132 -2.277 H37 LRM 157 LRM H38 H38 H 0 1 N N N -21.242 -14.250 9.264 -14.814 -3.957 -0.947 H38 LRM 158 LRM H39 H39 H 0 1 N N N -20.470 -17.277 8.114 -12.167 -2.284 -2.366 H39 LRM 159 LRM H40 H40 H 0 1 N N N -19.697 -16.090 5.926 -14.134 -1.824 -3.967 H40 LRM 160 LRM H41 H41 H 0 1 N N N -18.130 -16.171 2.653 -15.831 -0.610 -4.984 H41 LRM 161 LRM H42 H42 H 0 1 N N N -18.063 -15.489 4.244 -16.130 -0.775 -6.628 H42 LRM 162 LRM H43 H43 H 0 1 N N N -24.545 -20.268 5.324 -10.057 -4.854 -7.337 H43 LRM 163 LRM H44 H44 H 0 1 N N N -24.372 -19.425 3.747 -10.495 -6.321 -6.429 H44 LRM 164 LRM H45 H45 H 0 1 N N N -23.297 -20.807 4.149 -11.606 -5.671 -7.659 H45 LRM 165 LRM H46 H46 H 0 1 N N N -23.616 -18.940 7.145 -10.400 -5.114 -4.154 H46 LRM 166 LRM H47 H47 H 0 1 N N N -27.801 -19.201 10.187 -6.590 -5.646 -1.196 H47 LRM 167 LRM H48 H48 H 0 1 N N N -28.584 -13.312 9.919 -2.498 1.625 3.314 H48 LRM 168 LRM H49 H49 H 0 1 N N N -27.158 -12.220 9.881 -1.520 1.780 1.835 H49 LRM 169 LRM H50 H50 H 0 1 N N N -28.422 -10.531 8.683 -3.343 3.289 0.890 H50 LRM 170 LRM H51 H51 H 0 1 N N N -38.508 -14.964 9.689 -5.969 7.599 8.402 H51 LRM 171 LRM H52 H52 H 0 1 N N N -38.403 -13.365 10.501 -6.974 6.649 9.522 H52 LRM 172 LRM H53 H53 H 0 1 N N N -38.384 -13.465 8.707 -6.037 5.827 8.252 H53 LRM 173 LRM H54 H54 H 0 1 N N N -29.854 -11.608 11.157 -1.825 4.013 3.459 H54 LRM 174 LRM H55 H55 H 0 1 N N N -27.389 -11.675 13.333 0.265 6.791 2.716 H55 LRM 175 LRM H56 H56 H 0 1 N N N -30.386 -10.502 13.752 2.910 5.869 1.236 H56 LRM 176 LRM H57 H57 H 0 1 N N N -29.816 -9.528 15.151 2.932 4.140 0.816 H57 LRM 177 LRM H58 H58 H 0 1 N N N -31.056 -7.558 13.931 2.536 4.810 -1.609 H58 LRM 178 LRM H59 H59 H 0 1 N N N -32.281 -9.822 15.524 5.022 5.742 -0.068 H59 LRM 179 LRM H60 H60 H 0 1 N N N -38.282 -11.037 12.854 5.241 10.217 -6.176 H60 LRM 180 LRM H61 H61 H 0 1 N N N -36.884 -15.192 13.109 5.285 13.159 -1.794 H61 LRM 181 LRM H62 H62 H 0 1 N N N -35.419 -15.189 12.389 5.743 13.727 -3.308 H62 LRM 182 LRM H63 H63 H 0 1 N N N -29.380 -7.569 18.076 4.678 2.489 1.101 H63 LRM 183 LRM H64 H64 H 0 1 N N N -37.055 -8.995 17.562 7.568 -1.798 -3.745 H64 LRM 184 LRM H65 H65 H 0 1 N N N -33.566 -9.910 17.493 8.369 -2.244 -5.827 H65 LRM 185 LRM H66 H66 H 0 1 N N N -33.242 -7.590 24.045 6.718 -1.087 2.177 H66 LRM 186 LRM H67 H67 H 0 1 N N N -38.090 -11.165 23.310 5.333 -5.337 3.062 H67 LRM 187 LRM H68 H68 H 0 1 N N N -35.424 -12.526 23.898 7.406 -6.038 5.150 H68 LRM 188 LRM H69 H69 H 0 1 N N N -36.691 -13.182 25.742 5.388 -4.819 5.648 H69 LRM 189 LRM H70 H70 H 0 1 N N N -36.489 -14.536 23.236 7.182 -8.311 4.797 H70 LRM 190 LRM H71 H71 H 0 1 N N N -39.964 -15.341 23.491 6.106 -9.563 6.420 H71 LRM 191 LRM H72 H72 H 0 1 N N N -38.793 -15.475 22.135 5.774 -7.936 7.059 H72 LRM 192 LRM H73 H73 H 0 1 N N N -38.298 -15.936 23.800 4.450 -9.113 6.891 H73 LRM 193 LRM H74 H74 H 0 1 N N N -37.963 -13.386 21.159 5.076 -7.943 2.657 H74 LRM 194 LRM H75 H75 H 0 1 N N N -34.601 -12.049 21.165 8.733 -8.433 3.085 H75 LRM 195 LRM H76 H76 H 0 1 N N N -32.716 -13.047 20.052 9.880 -10.428 2.274 H76 LRM 196 LRM H77 H77 H 0 1 N N N -36.137 -17.299 19.454 6.595 -13.059 0.432 H77 LRM 197 LRM H78 H78 H 0 1 N N N -34.890 -17.008 18.194 5.188 -12.619 1.429 H78 LRM 198 LRM H79 H79 H 0 1 N N N -34.402 -17.576 19.827 5.442 -11.832 -0.147 H79 LRM 199 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LRM O29 C52 DOUB N N 1 LRM N17 C52 SING N N 2 LRM N17 C53 DOUB N N 3 LRM C52 C51 SING N N 4 LRM N18 C53 SING N N 5 LRM C53 N19 SING N N 6 LRM C51 N16 SING Y N 7 LRM C51 C50 DOUB Y N 8 LRM C49 N16 SING N N 9 LRM N16 C48 DOUB Y N 10 LRM N19 C50 SING N N 11 LRM C50 N15 SING Y N 12 LRM O33 P4 DOUB N N 13 LRM O34 P4 SING N N 14 LRM O36 P3 DOUB N N 15 LRM C48 N15 SING Y N 16 LRM P4 O24 SING N N 17 LRM P4 O25 SING N N 18 LRM N15 C47 SING N N 19 LRM O24 P3 SING N N 20 LRM P3 O23 SING N N 21 LRM P3 O35 SING N N 22 LRM O32 P5 DOUB N N 23 LRM C47 C54 SING N N 24 LRM C47 O28 SING N N 25 LRM O23 C44 SING N N 26 LRM O25 P5 SING N N 27 LRM C54 C55 SING N N 28 LRM C54 O30 SING N N 29 LRM O37 C7 SING N N 30 LRM O37 C43 SING N N 31 LRM P5 O27 SING N N 32 LRM P5 O26 SING N N 33 LRM C7 N4 SING N N 34 LRM C7 C8 SING N N 35 LRM O28 C46 SING N N 36 LRM C55 O31 SING N N 37 LRM C55 C46 SING N N 38 LRM O27 C45 SING N N 39 LRM N4 C6 SING Y N 40 LRM N4 C4 SING Y N 41 LRM C43 C44 SING N N 42 LRM C43 C10 SING N N 43 LRM C6 N3 DOUB Y N 44 LRM C4 N2 DOUB Y N 45 LRM C4 C5 SING Y N 46 LRM N2 C3 SING Y N 47 LRM O C8 SING N N 48 LRM O C9 SING N N 49 LRM N3 C5 SING Y N 50 LRM C5 C2 DOUB Y N 51 LRM C3 N1 DOUB Y N 52 LRM C2 N1 SING Y N 53 LRM C2 N SING N N 54 LRM C N SING N N 55 LRM N C1 SING N N 56 LRM C46 C45 SING N N 57 LRM C8 C10 SING N N 58 LRM C10 O1 SING N N 59 LRM O1 P SING N N 60 LRM P O22 DOUB N N 61 LRM P O21 SING N N 62 LRM P O2 SING N N 63 LRM O3 C13 SING N N 64 LRM O3 C12 SING N N 65 LRM C18 N9 DOUB Y N 66 LRM C18 N8 SING Y N 67 LRM N9 C15 SING Y N 68 LRM N8 C17 DOUB Y N 69 LRM C15 N5 SING Y N 70 LRM C15 C16 DOUB Y N 71 LRM C17 C16 SING Y N 72 LRM C17 N7 SING N N 73 LRM N5 C13 SING N N 74 LRM N5 C14 SING Y N 75 LRM C16 N6 SING Y N 76 LRM C13 C19 SING N N 77 LRM C14 N6 DOUB Y N 78 LRM O2 C11 SING N N 79 LRM C12 C11 SING N N 80 LRM C12 C21 SING N N 81 LRM O4 C19 SING N N 82 LRM O4 C20 SING N N 83 LRM C19 C21 SING N N 84 LRM C21 O5 SING N N 85 LRM O5 P1 SING N N 86 LRM N11 C27 SING N N 87 LRM C27 C26 SING N N 88 LRM C27 N12 DOUB N N 89 LRM C26 C25 DOUB N N 90 LRM N12 C28 SING N N 91 LRM C25 N10 SING N N 92 LRM O20 P1 DOUB N N 93 LRM P1 O19 SING N N 94 LRM P1 O6 SING N N 95 LRM C28 N10 SING N N 96 LRM C28 O8 DOUB N N 97 LRM N10 C24 SING N N 98 LRM O7 C24 SING N N 99 LRM O7 C23 SING N N 100 LRM C24 C29 SING N N 101 LRM O6 C22 SING N N 102 LRM C22 C23 SING N N 103 LRM C23 C31 SING N N 104 LRM O14 C39 DOUB N N 105 LRM C36 N14 SING N N 106 LRM C39 N14 SING N N 107 LRM C39 C38 SING N N 108 LRM C29 O9 SING N N 109 LRM C29 C31 SING N N 110 LRM N14 C35 SING N N 111 LRM O9 C30 SING N N 112 LRM C31 O10 SING N N 113 LRM C38 C37 DOUB N N 114 LRM C35 O13 DOUB N N 115 LRM C35 N13 SING N N 116 LRM C37 N13 SING N N 117 LRM N13 C34 SING N N 118 LRM O10 P2 SING N N 119 LRM C34 O12 SING N N 120 LRM C34 C40 SING N N 121 LRM O12 C33 SING N N 122 LRM O18 P2 DOUB N N 123 LRM P2 O11 SING N N 124 LRM P2 O17 SING N N 125 LRM O11 C32 SING N N 126 LRM C33 C32 SING N N 127 LRM C33 C42 SING N N 128 LRM C40 O15 SING N N 129 LRM C40 C42 SING N N 130 LRM C41 O15 SING N N 131 LRM C42 O16 SING N N 132 LRM C1 H1 SING N N 133 LRM C1 H2 SING N N 134 LRM C1 H3 SING N N 135 LRM C3 H4 SING N N 136 LRM C6 H5 SING N N 137 LRM C7 H6 SING N N 138 LRM C8 H7 SING N N 139 LRM C9 H8 SING N N 140 LRM C9 H9 SING N N 141 LRM C9 H10 SING N N 142 LRM N11 H11 SING N N 143 LRM N11 H12 SING N N 144 LRM C13 H13 SING N N 145 LRM C14 H14 SING N N 146 LRM C19 H15 SING N N 147 LRM C20 H16 SING N N 148 LRM C20 H17 SING N N 149 LRM C20 H18 SING N N 150 LRM C22 H19 SING N N 151 LRM C22 H20 SING N N 152 LRM C23 H21 SING N N 153 LRM C26 H22 SING N N 154 LRM C29 H23 SING N N 155 LRM C30 H24 SING N N 156 LRM C30 H25 SING N N 157 LRM C30 H26 SING N N 158 LRM C31 H27 SING N N 159 LRM C32 H28 SING N N 160 LRM C32 H29 SING N N 161 LRM O35 H30 SING N N 162 LRM O34 H31 SING N N 163 LRM C45 H32 SING N N 164 LRM C45 H33 SING N N 165 LRM C46 H34 SING N N 166 LRM C55 H35 SING N N 167 LRM O31 H36 SING N N 168 LRM C54 H37 SING N N 169 LRM O30 H38 SING N N 170 LRM C47 H39 SING N N 171 LRM N19 H40 SING N N 172 LRM N18 H41 SING N N 173 LRM N18 H42 SING N N 174 LRM C49 H43 SING N N 175 LRM C49 H44 SING N N 176 LRM C49 H45 SING N N 177 LRM C48 H46 SING N N 178 LRM O26 H47 SING N N 179 LRM C44 H48 SING N N 180 LRM C44 H49 SING N N 181 LRM C43 H50 SING N N 182 LRM C H51 SING N N 183 LRM C H52 SING N N 184 LRM C H53 SING N N 185 LRM C10 H54 SING N N 186 LRM O21 H55 SING N N 187 LRM C11 H56 SING N N 188 LRM C11 H57 SING N N 189 LRM C12 H58 SING N N 190 LRM C21 H59 SING N N 191 LRM C18 H60 SING N N 192 LRM N7 H61 SING N N 193 LRM N7 H62 SING N N 194 LRM O19 H63 SING N N 195 LRM C24 H64 SING N N 196 LRM C25 H65 SING N N 197 LRM O17 H66 SING N N 198 LRM C33 H67 SING N N 199 LRM C42 H68 SING N N 200 LRM O16 H69 SING N N 201 LRM C40 H70 SING N N 202 LRM C41 H71 SING N N 203 LRM C41 H72 SING N N 204 LRM C41 H73 SING N N 205 LRM C34 H74 SING N N 206 LRM C37 H75 SING N N 207 LRM C38 H76 SING N N 208 LRM C36 H77 SING N N 209 LRM C36 H78 SING N N 210 LRM C36 H79 SING N N 211 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LRM SMILES ACDLabs 12.01 "CN(c1ncnc2n(cnc12)C6C(C(C(COP(OP(OP(OCC3C(O)C(O)C(O3)n5c4NC(N)=NC(c4[n+](c5)C)=O)(O)=O)(O)=O)(=O)O)O6)OP(=O)(O)OCC9C(C(C(n8cnc7c(N)ncnc78)O9)OC)OP(O)(OCC%11C(C(OC)C(N%10C(=O)N=C(N)C=C%10)O%11)OP(=O)(OCC%12OC(C(OC)C%12O)N%13C=CC(N(C%13=O)C)=O)O)=O)OC)C" LRM InChI InChI 1.03 "InChI=1S/C56H78N20O38P6/c1-69(2)44-31-46(63-19-61-44)75(21-65-31)53-42(99-8)38(27(109-53)17-104-119(92,93)114-120(94,95)113-118(90,91)103-13-23-33(78)35(80)49(105-23)76-22-70(3)32-47(76)67-54(59)68-48(32)81)112-117(88,89)102-16-26-37(41(98-7)52(108-26)74-20-64-30-43(58)60-18-62-45(30)74)111-116(86,87)101-15-25-36(40(97-6)51(107-25)72-11-9-28(57)66-55(72)82)110-115(84,85)100-14-24-34(79)39(96-5)50(106-24)73-12-10-29(77)71(4)56(73)83/h9-12,18-27,33-42,49-53,78-80H,13-17H2,1-8H3,(H12-,57,58,59,60,62,66,67,68,81,82,84,85,86,87,88,89,90,91,92,93,94,95)/p+1/t23-,24-,25-,26-,27-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,49-,50-,51-,52-,53-/m1/s1" LRM InChIKey InChI 1.03 LXUOPLSSKHEGET-DYPPLJCPSA-O LRM SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(=O)O[C@@H]2[C@@H](CO[P](O)(=O)O[C@@H]3[C@@H](CO[P](O)(=O)O[C@@H]4[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]5O[C@H]([C@H](O)[C@@H]5O)n6c[n+](C)c7C(=O)N=C(N)Nc67)O[C@H]([C@@H]4OC)n8cnc9c(ncnc89)N(C)C)O[C@H]([C@@H]3OC)n%10cnc%11c(N)ncnc%10%11)O[C@H]([C@@H]2OC)N%12C=CC(=NC%12=O)N)O[C@H]1N%13C=CC(=O)N(C)C%13=O" LRM SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](CO[P](O)(=O)O[CH]2[CH](CO[P](O)(=O)O[CH]3[CH](CO[P](O)(=O)O[CH]4[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH]([CH](O)[CH]5O)n6c[n+](C)c7C(=O)N=C(N)Nc67)O[CH]([CH]4OC)n8cnc9c(ncnc89)N(C)C)O[CH]([CH]3OC)n%10cnc%11c(N)ncnc%10%11)O[CH]([CH]2OC)N%12C=CC(=NC%12=O)N)O[CH]1N%13C=CC(=O)N(C)C%13=O" LRM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[n+]1cn(c2c1C(=O)N=C(N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N(C)C)OC)OP(=O)(O)OC[C@@H]7[C@H]([C@H]([C@@H](O7)n8cnc9c8ncnc9N)OC)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N1C=CC(=NC1=O)N)OC)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N1C=CC(=O)N(C1=O)C)OC)O)O)O" LRM SMILES "OpenEye OEToolkits" 2.0.7 "C[n+]1cn(c2c1C(=O)N=C(N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N(C)C)OC)OP(=O)(O)OCC7C(C(C(O7)n8cnc9c8ncnc9N)OC)OP(=O)(O)OCC1C(C(C(O1)N1C=CC(=NC1=O)N)OC)OP(=O)(O)OCC1C(C(C(O1)N1C=CC(=O)N(C1=O)C)OC)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LRM "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-9-[(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(S)-({(2R,3R,4R,5R)-3-{[(R)-{[(2R,3R,4R,5R)-3-{[(S)-{[(2R,3R,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-3-{[(S)-hydroxy{[(2R,3R,4R,5R)-3-hydroxy-4-methoxy-5-(3-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methoxy}phosphoryl]oxy}-4-methoxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}-5-(6-amino-9H-purin-9-yl)-4-methoxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}-5-[6-(dimethylamino)-9H-purin-9-yl]-4-methoxytetrahydrofuran-2-yl}methoxy)(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2-yl]-7-methyl-6-oxo-6,9-dihydro-3H-purin-7-ium (non-preferred name)" LRM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-2-[[[(2~{R},3~{R},4~{R},5~{R})-2-[[[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-5-[6-(dimethylamino)purin-9-yl]-4-methoxy-oxolan-3-yl]oxy-oxidanyl-phosphoryl]oxymethyl]-4-methoxy-oxolan-3-yl] [(2~{R},3~{R},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-methoxy-3-[[(2~{R},3~{R},4~{R},5~{R})-4-methoxy-5-[3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LRM "Create component" 2019-03-13 RCSB LRM "Modify formal charge" 2019-03-13 RCSB LRM "Modify name" 2019-04-25 RCSB LRM "Initial release" 2019-05-01 RCSB ##