data_LRX # _chem_comp.id LRX _chem_comp.name "squarunkin A" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H32 F3 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ethyl 4-[[3,4-bis(oxidanylidene)-2-[2-[4-[3-(trifluoromethyl)phenyl]piperazin-1-yl]ethylamino]cyclobuten-1-yl]amino]piperidine-1-carboxylate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-11 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 523.548 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LRX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ADP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LRX C1 C1 C 0 1 N N N N N N 41.088 -10.482 -22.519 9.677 -0.872 1.052 C1 LRX 1 LRX F1 F1 F 0 1 N N N N N N 42.165 -10.345 -21.727 11.002 -0.424 1.073 F1 LRX 2 LRX F2 F2 F 0 1 N N N N N N 40.173 -9.854 -21.757 9.630 -2.164 0.517 F2 LRX 3 LRX F3 F3 F 0 1 N N N N N N 41.296 -9.658 -23.599 9.169 -0.888 2.355 F3 LRX 4 LRX C4 C2 C 0 1 Y N N N N N 40.784 -11.896 -22.959 8.848 0.055 0.201 C4 LRX 5 LRX C5 C3 C 0 1 Y N N N N N 41.047 -12.351 -24.286 9.428 0.719 -0.865 C5 LRX 6 LRX C6 C4 C 0 1 Y N N N N N 40.786 -13.701 -24.598 8.671 1.570 -1.648 C6 LRX 7 LRX C7 C5 C 0 1 Y N N N N N 40.211 -14.578 -23.633 7.332 1.761 -1.369 C7 LRX 8 LRX C8 C6 C 0 1 Y N N N N N 39.939 -14.111 -22.307 6.746 1.096 -0.299 C8 LRX 9 LRX C9 C7 C 0 1 Y N N N N N 40.241 -12.760 -21.992 7.508 0.237 0.482 C9 LRX 10 LRX N10 N1 N 0 1 N N N N N N 39.316 -15.003 -21.370 5.392 1.286 -0.014 N10 LRX 11 LRX C11 C8 C 0 1 N N N N N N 39.362 -16.472 -21.349 4.780 2.225 -0.964 C11 LRX 12 LRX C12 C9 C 0 1 N N N N N N 39.478 -16.956 -19.844 3.321 2.467 -0.570 C12 LRX 13 LRX C13 C10 C 0 1 N N N N N N 38.551 -14.438 -20.212 4.670 0.005 -0.005 C13 LRX 14 LRX C14 C11 C 0 1 N N N N N N 37.564 -15.449 -19.528 3.211 0.248 0.389 C14 LRX 15 LRX N15 N2 N 0 1 N N N N N N 38.290 -16.542 -18.922 2.600 1.187 -0.561 N15 LRX 16 LRX C16 C12 C 0 1 N N N N N N 37.378 -17.721 -18.637 1.176 1.387 -0.261 C16 LRX 17 LRX C17 C13 C 0 1 N N N N N N 37.329 -18.698 -19.899 0.415 0.082 -0.503 C17 LRX 18 LRX N18 N3 N 0 1 N N N N N N 38.624 -19.493 -20.132 -1.005 0.281 -0.203 N18 LRX 19 LRX C19 C14 C 0 1 N N N N N N 39.279 -20.393 -19.282 -1.890 -0.758 -0.349 C19 LRX 20 LRX C20 C15 C 0 1 N N N N N N 39.952 -21.731 -19.356 -3.270 -0.918 -0.165 C20 LRX 21 LRX C21 C16 C 0 1 N N N N N N 40.266 -21.703 -17.965 -3.243 -2.332 -0.567 C21 LRX 22 LRX C22 C17 C 0 1 N N N N N N 39.631 -20.398 -17.751 -1.783 -2.163 -0.768 C22 LRX 23 LRX O23 O1 O 0 1 N N N N N N 39.421 -19.591 -16.853 -0.875 -2.887 -1.129 O23 LRX 24 LRX O24 O2 O 0 1 N N N N N N 40.932 -22.615 -17.239 -4.052 -3.232 -0.686 O24 LRX 25 LRX N25 N4 N 0 1 N N N N N N 40.326 -22.576 -20.430 -4.272 -0.072 0.239 N25 LRX 26 LRX C26 C18 C 0 1 N N N N N N 41.700 -23.251 -20.569 -5.650 -0.559 0.330 C26 LRX 27 LRX C27 C19 C 0 1 N N N N N N 41.716 -24.706 -19.896 -6.426 0.290 1.339 C27 LRX 28 LRX C28 C20 C 0 1 N N N N N N 41.520 -25.862 -20.781 -7.857 -0.244 1.458 C28 LRX 29 LRX C29 C21 C 0 1 N N N N N N 42.314 -23.366 -21.964 -6.318 -0.459 -1.043 C29 LRX 30 LRX C30 C22 C 0 1 N N N N N N 43.118 -24.701 -22.240 -7.748 -1.002 -0.952 C30 LRX 31 LRX N31 N5 N 0 1 N N N N N N 42.263 -25.948 -21.973 -8.457 -0.287 0.118 N31 LRX 32 LRX C32 C23 C 0 1 N N N N N N 42.182 -27.154 -22.833 -9.637 0.317 -0.126 C32 LRX 33 LRX O33 O3 O 0 1 N N N N N N 42.341 -27.099 -24.069 -10.124 0.273 -1.238 O33 LRX 34 LRX O34 O4 O 0 1 N N N N N N 41.819 -28.428 -22.198 -10.277 0.968 0.864 O34 LRX 35 LRX C35 C24 C 0 1 N N N N N N 41.297 -29.580 -22.931 -11.543 1.595 0.529 C35 LRX 36 LRX C36 C25 C 0 1 N N N N N N 42.418 -30.526 -23.397 -12.116 2.282 1.771 C36 LRX 37 LRX H1 H1 H 0 1 N N N N N N 41.437 -11.677 -25.034 10.475 0.572 -1.086 H1 LRX 38 LRX H2 H2 H 0 1 N N N N N N 41.025 -14.076 -25.582 9.127 2.087 -2.479 H2 LRX 39 LRX H3 H3 H 0 1 N N N N N N 39.980 -15.598 -23.903 6.741 2.426 -1.980 H3 LRX 40 LRX H4 H4 H 0 1 N N N N N N 40.051 -12.391 -20.995 7.055 -0.285 1.312 H4 LRX 41 LRX H5 H5 H 0 1 N N N N N N 38.443 -16.877 -21.798 5.324 3.169 -0.943 H5 LRX 42 LRX H6 H6 H 0 1 N N N N N N 40.235 -16.823 -21.919 4.820 1.804 -1.969 H6 LRX 43 LRX H7 H7 H 0 1 N N N N N N 39.543 -18.054 -19.843 3.282 2.914 0.424 H7 LRX 44 LRX H8 H8 H 0 1 N N N N N N 40.401 -16.534 -19.420 2.857 3.141 -1.290 H8 LRX 45 LRX H9 H9 H 0 1 N N N N N N 39.274 -14.099 -19.456 4.709 -0.441 -0.998 H9 LRX 46 LRX H10 H10 H 0 1 N N N N N N 37.967 -13.578 -20.573 5.135 -0.668 0.716 H10 LRX 47 LRX H11 H11 H 0 1 N N N N N N 36.989 -14.923 -18.752 2.668 -0.697 0.369 H11 LRX 48 LRX H12 H12 H 0 1 N N N N N N 36.875 -15.850 -20.286 3.171 0.669 1.394 H12 LRX 49 LRX H14 H14 H 0 1 N N N N N N 36.364 -17.353 -18.423 1.063 1.685 0.782 H14 LRX 50 LRX H15 H15 H 0 1 N N N N N N 37.759 -18.273 -17.765 0.774 2.167 -0.907 H15 LRX 51 LRX H16 H16 H 0 1 N N N N N N 37.130 -18.093 -20.796 0.528 -0.216 -1.545 H16 LRX 52 LRX H17 H17 H 0 1 N N N N N N 36.507 -19.414 -19.749 0.817 -0.698 0.144 H17 LRX 53 LRX H18 H18 H 0 1 N N N N N N 38.443 -20.023 -20.960 -1.320 1.148 0.098 H18 LRX 54 LRX H22 H22 H 0 1 N N N N N N 40.212 -22.026 -21.257 -4.067 0.849 0.465 H22 LRX 55 LRX H23 H23 H 0 1 N N N N N N 42.400 -22.645 -19.974 -5.647 -1.599 0.657 H23 LRX 56 LRX H24 H24 H 0 1 N N N N N N 40.916 -24.729 -19.141 -5.936 0.238 2.312 H24 LRX 57 LRX H25 H25 H 0 1 N N N N N N 42.691 -24.830 -19.402 -6.450 1.326 1.000 H25 LRX 58 LRX H26 H26 H 0 1 N N N N N N 40.457 -25.874 -21.063 -7.838 -1.247 1.883 H26 LRX 59 LRX H27 H27 H 0 1 N N N N N N 41.753 -26.761 -20.192 -8.441 0.415 2.101 H27 LRX 60 LRX H28 H28 H 0 1 N N N N N N 43.002 -22.519 -22.103 -6.344 0.583 -1.360 H28 LRX 61 LRX H29 H29 H 0 1 N N N N N N 41.499 -23.301 -22.700 -5.751 -1.046 -1.767 H29 LRX 62 LRX H30 H30 H 0 1 N N N N N N 44.000 -24.727 -21.584 -8.260 -0.843 -1.901 H30 LRX 63 LRX H31 H31 H 0 1 N N N N N N 43.442 -24.710 -23.291 -7.720 -2.068 -0.724 H31 LRX 64 LRX H32 H32 H 0 1 N N N N N N 40.747 -29.220 -23.813 -11.386 2.335 -0.255 H32 LRX 65 LRX H33 H33 H 0 1 N N N N N N 40.612 -30.137 -22.275 -12.243 0.836 0.178 H33 LRX 66 LRX H34 H34 H 0 1 N N N N N N 41.979 -31.375 -23.942 -12.273 1.541 2.555 H34 LRX 67 LRX H35 H35 H 0 1 N N N N N N 43.106 -29.981 -24.060 -11.417 3.040 2.122 H35 LRX 68 LRX H36 H36 H 0 1 N N N N N N 42.971 -30.898 -22.522 -13.067 2.752 1.520 H36 LRX 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LRX C6 C5 DOUB Y N 1 LRX C6 C7 SING Y N 2 LRX C5 C4 SING Y N 3 LRX O33 C32 DOUB N N 4 LRX C7 C8 DOUB Y N 5 LRX F3 C1 SING N N 6 LRX C36 C35 SING N N 7 LRX C4 C1 SING N N 8 LRX C4 C9 DOUB Y N 9 LRX C35 O34 SING N N 10 LRX C32 O34 SING N N 11 LRX C32 N31 SING N N 12 LRX C1 F2 SING N N 13 LRX C1 F1 SING N N 14 LRX C8 C9 SING Y N 15 LRX C8 N10 SING N N 16 LRX C30 N31 SING N N 17 LRX C30 C29 SING N N 18 LRX N31 C28 SING N N 19 LRX C29 C26 SING N N 20 LRX N10 C11 SING N N 21 LRX N10 C13 SING N N 22 LRX C11 C12 SING N N 23 LRX C28 C27 SING N N 24 LRX C26 N25 SING N N 25 LRX C26 C27 SING N N 26 LRX N25 C20 SING N N 27 LRX C13 C14 SING N N 28 LRX N18 C17 SING N N 29 LRX N18 C19 SING N N 30 LRX C17 C16 SING N N 31 LRX C12 N15 SING N N 32 LRX C14 N15 SING N N 33 LRX C20 C19 DOUB N N 34 LRX C20 C21 SING N N 35 LRX C19 C22 SING N N 36 LRX N15 C16 SING N N 37 LRX C21 C22 SING N N 38 LRX C21 O24 DOUB N N 39 LRX C22 O23 DOUB N N 40 LRX C5 H1 SING N N 41 LRX C6 H2 SING N N 42 LRX C7 H3 SING N N 43 LRX C9 H4 SING N N 44 LRX C11 H5 SING N N 45 LRX C11 H6 SING N N 46 LRX C12 H7 SING N N 47 LRX C12 H8 SING N N 48 LRX C13 H9 SING N N 49 LRX C13 H10 SING N N 50 LRX C14 H11 SING N N 51 LRX C14 H12 SING N N 52 LRX C16 H14 SING N N 53 LRX C16 H15 SING N N 54 LRX C17 H16 SING N N 55 LRX C17 H17 SING N N 56 LRX N18 H18 SING N N 57 LRX N25 H22 SING N N 58 LRX C26 H23 SING N N 59 LRX C27 H24 SING N N 60 LRX C27 H25 SING N N 61 LRX C28 H26 SING N N 62 LRX C28 H27 SING N N 63 LRX C29 H28 SING N N 64 LRX C29 H29 SING N N 65 LRX C30 H30 SING N N 66 LRX C30 H31 SING N N 67 LRX C35 H32 SING N N 68 LRX C35 H33 SING N N 69 LRX C36 H34 SING N N 70 LRX C36 H35 SING N N 71 LRX C36 H36 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LRX InChI InChI 1.06 "InChI=1S/C25H32F3N5O4/c1-2-37-24(36)33-9-6-18(7-10-33)30-21-20(22(34)23(21)35)29-8-11-31-12-14-32(15-13-31)19-5-3-4-17(16-19)25(26,27)28/h3-5,16,18,29-30H,2,6-15H2,1H3" LRX InChIKey InChI 1.06 ZKITWOVRRSBKFG-UHFFFAOYSA-N LRX SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)N1CCC(CC1)NC2=C(NCCN3CCN(CC3)c4cccc(c4)C(F)(F)F)C(=O)C2=O" LRX SMILES CACTVS 3.385 "CCOC(=O)N1CCC(CC1)NC2=C(NCCN3CCN(CC3)c4cccc(c4)C(F)(F)F)C(=O)C2=O" LRX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)N1CCC(CC1)NC2=C(C(=O)C2=O)NCCN3CCN(CC3)c4cccc(c4)C(F)(F)F" LRX SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)N1CCC(CC1)NC2=C(C(=O)C2=O)NCCN3CCN(CC3)c4cccc(c4)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id LRX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "ethyl 4-[[3,4-bis(oxidanylidene)-2-[2-[4-[3-(trifluoromethyl)phenyl]piperazin-1-yl]ethylamino]cyclobuten-1-yl]amino]piperidine-1-carboxylate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LRX _pdbx_chem_comp_synonyms.name "ethyl 4-[[3,4-bis(oxidanylidene)-2-[2-[4-[3-(trifluoromethyl)phenyl]piperazin-1-yl]ethylamino]cyclobuten-1-yl]amino]piperidine-1-carboxylate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LRX "Create component" 2022-07-11 PDBE LRX "Modify descriptor" 2022-08-22 RCSB LRX "Initial release" 2025-01-15 RCSB #