data_LRZ # _chem_comp.id LRZ _chem_comp.name "methyl 6-[3-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]propylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H32 N10 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-09-03 _chem_comp.pdbx_modified_date 2022-03-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 608.606 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LRZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SQ6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LRZ C1 C1 C 0 1 Y N N 3.523 29.504 -17.825 -11.609 0.529 0.134 C1 LRZ 1 LRZ C2 C2 C 0 1 Y N N 2.764 28.490 -18.414 -11.140 1.781 -0.305 C2 LRZ 2 LRZ C3 C3 C 0 1 Y N N 3.351 27.301 -18.778 -9.823 1.967 -0.596 C3 LRZ 3 LRZ C4 C4 C 0 1 Y N N 4.728 27.047 -18.506 -8.912 0.897 -0.458 C4 LRZ 4 LRZ C5 C5 C 0 1 Y N N 5.481 28.061 -17.853 -9.378 -0.368 -0.015 C5 LRZ 5 LRZ C6 C6 C 0 1 Y N N 4.849 29.290 -17.535 -10.737 -0.537 0.284 C6 LRZ 6 LRZ O1 O1 O 0 1 N N N 2.683 26.318 -19.436 -9.386 3.182 -1.019 O1 LRZ 7 LRZ O2 O2 O 0 1 N N N 3.724 31.737 -17.069 -13.894 1.386 0.300 O2 LRZ 8 LRZ O3 O3 O 0 1 N N N 1.679 31.023 -17.683 -13.452 -0.725 0.828 O3 LRZ 9 LRZ O5 O4 O 0 1 N N N 12.293 29.139 -16.826 7.995 -3.871 -0.641 O5 LRZ 10 LRZ C10 C7 C 0 1 Y N N 6.831 27.794 -17.521 -8.469 -1.433 0.121 C10 LRZ 11 LRZ C11 C8 C 0 1 N N N 2.864 30.822 -17.548 -13.042 0.353 0.444 C11 LRZ 12 LRZ C12 C9 C 0 1 N N N 3.276 33.130 -17.047 -15.288 1.140 0.623 C12 LRZ 13 LRZ C13 C10 C 0 1 N N N 8.598 24.206 -19.289 -4.402 -0.508 -0.196 C13 LRZ 14 LRZ C14 C11 C 0 1 N N N 10.136 22.692 -20.453 -2.093 -1.166 0.220 C14 LRZ 15 LRZ C15 C12 C 0 1 N N N 10.878 21.535 -19.802 -0.710 -0.910 -0.383 C15 LRZ 16 LRZ C16 C13 C 0 1 N N N 12.035 22.011 -18.953 0.345 -1.676 0.417 C16 LRZ 17 LRZ C17 C14 C 0 1 N N N 12.783 24.338 -19.183 2.781 -2.019 0.395 C17 LRZ 18 LRZ C18 C15 C 0 1 N N N 13.304 26.737 -19.209 5.208 -2.415 0.446 C18 LRZ 19 LRZ C19 C16 C 0 1 N N R 12.606 28.065 -18.977 6.452 -1.998 -0.341 C19 LRZ 20 LRZ C20 C17 C 0 1 N N S 11.768 28.141 -17.694 7.698 -2.745 0.187 C20 LRZ 21 LRZ C21 C18 C 0 1 N N R 10.352 28.473 -18.190 8.829 -1.696 0.101 C21 LRZ 22 LRZ C22 C19 C 0 1 N N R 10.630 29.108 -19.545 8.133 -0.440 -0.469 C22 LRZ 23 LRZ C23 C20 C 0 1 Y N N 8.653 27.986 -20.675 8.163 1.429 1.226 C23 LRZ 24 LRZ C24 C21 C 0 1 Y N N 8.146 29.409 -22.162 9.928 2.539 0.630 C24 LRZ 25 LRZ C25 C22 C 0 1 Y N N 7.648 30.169 -23.238 11.010 3.418 0.448 C25 LRZ 26 LRZ C26 C23 C 0 1 Y N N 9.183 31.799 -22.657 11.698 2.142 -1.349 C26 LRZ 27 LRZ C27 C24 C 0 1 Y N N 9.188 29.967 -21.438 9.803 1.449 -0.248 C27 LRZ 28 LRZ C7 C25 C 0 1 Y N N 5.374 25.823 -18.825 -7.552 1.065 -0.752 C7 LRZ 29 LRZ C8 C26 C 0 1 Y N N 6.692 25.603 -18.495 -6.688 0.001 -0.607 C8 LRZ 30 LRZ C9 C27 C 0 1 Y N N 7.406 26.595 -17.828 -7.155 -1.244 -0.171 C9 LRZ 31 LRZ N1 N1 N 0 1 N N N 7.303 24.381 -18.870 -5.331 0.167 -0.901 N1 LRZ 32 LRZ N10 N2 N 0 1 Y N N 9.750 31.167 -21.627 10.703 1.291 -1.213 N10 LRZ 33 LRZ N2 N3 N 0 1 N N N 8.856 22.992 -19.823 -3.103 -0.432 -0.547 N2 LRZ 34 LRZ N3 N4 N 0 1 N N N 11.966 23.430 -18.632 1.669 -1.431 -0.160 N3 LRZ 35 LRZ N4 N5 N 0 1 N N N 12.385 25.614 -19.284 4.023 -1.789 -0.146 N4 LRZ 36 LRZ N5 N6 N 0 1 N N N 13.942 24.088 -19.665 2.657 -2.794 1.436 N5 LRZ 37 LRZ N6 N7 N 0 1 Y N N 9.528 29.028 -20.491 8.679 0.771 0.150 N6 LRZ 38 LRZ N7 N8 N 0 1 Y N N 7.806 28.165 -21.658 8.898 2.466 1.507 N7 LRZ 39 LRZ N8 N9 N 0 1 N N N 6.685 29.746 -24.065 11.188 4.505 1.285 N8 LRZ 40 LRZ N9 N10 N 0 1 Y N N 8.196 31.383 -23.454 11.858 3.180 -0.547 N9 LRZ 41 LRZ O4 O5 O 0 1 N N N 9.456 25.082 -19.212 -4.735 -1.186 0.757 O4 LRZ 42 LRZ O6 O6 O 0 1 N N N 9.709 29.413 -17.342 9.859 -2.142 -0.783 O6 LRZ 43 LRZ O7 O7 O 0 1 N N N 11.717 28.379 -20.069 6.740 -0.600 -0.123 O7 LRZ 44 LRZ H1 H1 H 0 1 N N N 1.708 28.641 -18.585 -11.832 2.603 -0.412 H1 LRZ 45 LRZ H2 H2 H 0 1 N N N 5.420 30.072 -17.056 -11.103 -1.494 0.626 H2 LRZ 46 LRZ H6 H3 H 0 1 N N N 1.780 26.582 -19.568 -9.411 3.296 -1.979 H6 LRZ 47 LRZ H25 H4 H 0 1 N N N 11.768 29.179 -16.035 8.768 -4.376 -0.355 H25 LRZ 48 LRZ H5 H5 H 0 1 N N N 7.415 28.550 -17.017 -8.814 -2.399 0.457 H5 LRZ 49 LRZ H8 H6 H 0 1 N N N 4.073 33.766 -16.634 -15.372 0.834 1.666 H8 LRZ 50 LRZ H10 H7 H 0 1 N N N 3.041 33.456 -18.071 -15.865 2.051 0.465 H10 LRZ 51 LRZ H9 H8 H 0 1 N N N 2.377 33.216 -16.420 -15.676 0.349 -0.019 H9 LRZ 52 LRZ H12 H9 H 0 1 N N N 9.954 22.439 -21.508 -2.313 -2.233 0.183 H12 LRZ 53 LRZ H13 H10 H 0 1 N N N 10.771 23.589 -20.396 -2.106 -0.827 1.255 H13 LRZ 54 LRZ H14 H11 H 0 1 N N N 10.176 20.976 -19.165 -0.697 -1.248 -1.419 H14 LRZ 55 LRZ H15 H12 H 0 1 N N N 11.265 20.873 -20.590 -0.489 0.157 -0.347 H15 LRZ 56 LRZ H16 H13 H 0 1 N N N 12.037 21.440 -18.013 0.332 -1.337 1.453 H16 LRZ 57 LRZ H17 H14 H 0 1 N N N 12.971 21.821 -19.499 0.125 -2.743 0.381 H17 LRZ 58 LRZ H21 H15 H 0 1 N N N 14.005 26.561 -18.380 5.102 -3.499 0.410 H21 LRZ 59 LRZ H22 H16 H 0 1 N N N 13.862 26.796 -20.155 5.309 -2.094 1.482 H22 LRZ 60 LRZ H23 H17 H 0 1 N N N 13.379 28.845 -18.915 6.313 -2.198 -1.404 H23 LRZ 61 LRZ H24 H18 H 0 1 N N N 11.761 27.156 -17.203 7.544 -3.060 1.219 H24 LRZ 62 LRZ H26 H19 H 0 1 N N N 9.763 27.552 -18.309 9.237 -1.493 1.090 H26 LRZ 63 LRZ H28 H20 H 0 1 N N N 10.913 30.160 -19.392 8.252 -0.398 -1.552 H28 LRZ 64 LRZ H29 H21 H 0 1 N N N 8.662 27.096 -20.063 7.274 1.135 1.764 H29 LRZ 65 LRZ H32 H22 H 0 1 N N N 9.576 32.781 -22.875 12.411 1.985 -2.144 H32 LRZ 66 LRZ H3 H23 H 0 1 N N N 4.820 25.050 -19.337 -7.184 2.023 -1.090 H3 LRZ 67 LRZ H4 H24 H 0 1 N N N 8.433 26.412 -17.549 -6.462 -2.066 -0.064 H4 LRZ 68 LRZ H7 H25 H 0 1 N N N 6.732 23.562 -18.825 -5.059 0.768 -1.612 H7 LRZ 69 LRZ H11 H26 H 0 1 N N N 8.152 22.282 -19.785 -2.837 0.109 -1.307 H11 LRZ 70 LRZ H18 H27 H 0 1 N N N 11.280 23.739 -17.973 1.762 -0.854 -0.934 H18 LRZ 71 LRZ H19 H28 H 0 1 N N N 11.412 25.802 -19.417 4.116 -1.212 -0.921 H19 LRZ 72 LRZ H20 H29 H 0 1 N N N 14.180 23.120 -19.585 1.780 -2.956 1.818 H20 LRZ 73 LRZ H31 H30 H 0 1 N N N 6.512 30.444 -24.760 10.562 4.668 2.007 H31 LRZ 74 LRZ H30 H31 H 0 1 N N N 6.976 28.898 -24.509 11.938 5.105 1.148 H30 LRZ 75 LRZ H27 H32 H 0 1 N N N 9.537 29.013 -16.498 10.289 -2.962 -0.504 H27 LRZ 76 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LRZ N8 C25 SING N N 1 LRZ N9 C25 DOUB Y N 2 LRZ N9 C26 SING Y N 3 LRZ C25 C24 SING Y N 4 LRZ C26 N10 DOUB Y N 5 LRZ C24 N7 SING Y N 6 LRZ C24 C27 DOUB Y N 7 LRZ N7 C23 DOUB Y N 8 LRZ N10 C27 SING Y N 9 LRZ C27 N6 SING Y N 10 LRZ C23 N6 SING Y N 11 LRZ N6 C22 SING N N 12 LRZ C14 N2 SING N N 13 LRZ C14 C15 SING N N 14 LRZ O7 C22 SING N N 15 LRZ O7 C19 SING N N 16 LRZ N2 C13 SING N N 17 LRZ C15 C16 SING N N 18 LRZ N5 C17 DOUB N N 19 LRZ C22 C21 SING N N 20 LRZ O1 C3 SING N N 21 LRZ C13 O4 DOUB N N 22 LRZ C13 N1 SING N N 23 LRZ N4 C18 SING N N 24 LRZ N4 C17 SING N N 25 LRZ C18 C19 SING N N 26 LRZ C17 N3 SING N N 27 LRZ C19 C20 SING N N 28 LRZ C16 N3 SING N N 29 LRZ N1 C8 SING N N 30 LRZ C7 C4 DOUB Y N 31 LRZ C7 C8 SING Y N 32 LRZ C3 C4 SING Y N 33 LRZ C3 C2 DOUB Y N 34 LRZ C4 C5 SING Y N 35 LRZ C8 C9 DOUB Y N 36 LRZ C2 C1 SING Y N 37 LRZ C21 C20 SING N N 38 LRZ C21 O6 SING N N 39 LRZ C5 C6 SING Y N 40 LRZ C5 C10 DOUB Y N 41 LRZ C9 C10 SING Y N 42 LRZ C1 C11 SING N N 43 LRZ C1 C6 DOUB Y N 44 LRZ C20 O5 SING N N 45 LRZ O3 C11 DOUB N N 46 LRZ C11 O2 SING N N 47 LRZ O2 C12 SING N N 48 LRZ C2 H1 SING N N 49 LRZ C6 H2 SING N N 50 LRZ O1 H6 SING N N 51 LRZ O5 H25 SING N N 52 LRZ C10 H5 SING N N 53 LRZ C12 H8 SING N N 54 LRZ C12 H10 SING N N 55 LRZ C12 H9 SING N N 56 LRZ C14 H12 SING N N 57 LRZ C14 H13 SING N N 58 LRZ C15 H14 SING N N 59 LRZ C15 H15 SING N N 60 LRZ C16 H16 SING N N 61 LRZ C16 H17 SING N N 62 LRZ C18 H21 SING N N 63 LRZ C18 H22 SING N N 64 LRZ C19 H23 SING N N 65 LRZ C20 H24 SING N N 66 LRZ C21 H26 SING N N 67 LRZ C22 H28 SING N N 68 LRZ C23 H29 SING N N 69 LRZ C26 H32 SING N N 70 LRZ C7 H3 SING N N 71 LRZ C9 H4 SING N N 72 LRZ N1 H7 SING N N 73 LRZ N2 H11 SING N N 74 LRZ N3 H18 SING N N 75 LRZ N4 H19 SING N N 76 LRZ N5 H20 SING N N 77 LRZ N8 H31 SING N N 78 LRZ N8 H30 SING N N 79 LRZ O6 H27 SING N N 80 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LRZ InChI InChI 1.03 "InChI=1S/C27H32N10O7/c1-43-25(41)14-7-13-3-4-15(9-16(13)17(38)8-14)36-27(42)31-6-2-5-30-26(29)32-10-18-20(39)21(40)24(44-18)37-12-35-19-22(28)33-11-34-23(19)37/h3-4,7-9,11-12,18,20-21,24,38-40H,2,5-6,10H2,1H3,(H2,28,33,34)(H3,29,30,32)(H2,31,36,42)/t18-,20-,21-,24-/m1/s1" LRZ InChIKey InChI 1.03 GJPQENHVEQGHGP-UMCMBGNQSA-N LRZ SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCNC(=N)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1" LRZ SMILES CACTVS 3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCNC(=N)NC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1" LRZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\NCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)/NC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" LRZ SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCNC(=N)NCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id LRZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 6-[3-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]propylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LRZ "Create component" 2019-09-03 EBI LRZ "Initial release" 2022-03-23 RCSB ##