data_LSK # _chem_comp.id LSK _chem_comp.name "methyl 6-[5-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]pentylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H36 N10 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-09-03 _chem_comp.pdbx_modified_date 2022-03-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 636.659 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LSK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SQA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LSK C20 C1 C 0 1 N N S -0.835 -0.588 7.148 -8.964 -2.628 -0.262 C20 LSK 1 LSK C19 C2 C 0 1 N N R -0.414 -0.668 8.621 -7.684 -1.960 0.287 C19 LSK 2 LSK C18 C3 C 0 1 N N N 0.618 0.342 9.090 -6.458 -2.430 -0.500 C18 LSK 3 LSK C17 C4 C 0 1 N N N 0.885 2.794 9.276 -4.014 -2.169 -0.427 C17 LSK 4 LSK C21 C5 C 0 1 N N R -2.295 -0.116 7.210 -10.037 -1.520 -0.164 C21 LSK 5 LSK C16 C6 C 0 1 N N N -2.649 4.289 6.801 0.898 -1.587 -0.206 C16 LSK 6 LSK C4 C7 C 0 1 Y N N -8.939 2.067 7.547 10.160 0.862 0.554 C4 LSK 7 LSK C14 C8 C 0 1 N N N -3.852 2.656 5.206 3.359 -1.215 0.015 C14 LSK 8 LSK C15 C9 C 0 1 N N N -3.862 3.385 6.550 1.988 -0.894 0.614 C15 LSK 9 LSK C3 C10 C 0 1 Y N N -8.725 2.605 8.851 11.037 1.953 0.744 C3 LSK 10 LSK C8 C11 C 0 1 Y N N -8.128 1.177 5.435 7.991 -0.150 0.768 C8 LSK 11 LSK N9 N1 N 0 1 Y N N -6.991 -1.138 11.426 -12.806 3.497 0.534 N9 LSK 12 LSK C2 C12 C 0 1 Y N N -9.775 2.834 9.702 12.331 1.865 0.330 C2 LSK 13 LSK N7 N2 N 0 1 Y N N -5.077 1.707 10.013 -9.866 2.659 -1.503 N7 LSK 14 LSK C5 C13 C 0 1 Y N N -10.273 1.795 7.139 10.636 -0.320 -0.068 C5 LSK 15 LSK C10 C14 C 0 1 Y N N -10.491 1.241 5.851 9.761 -1.406 -0.257 C10 LSK 16 LSK C13 C15 C 0 1 N N N -5.940 1.645 4.383 5.697 -0.693 0.456 C13 LSK 17 LSK C6 C16 C 0 1 Y N N -11.328 2.048 8.049 11.973 -0.391 -0.487 C6 LSK 18 LSK O1 O1 O 0 1 N N N -7.437 2.871 9.184 10.589 3.090 1.338 O1 LSK 19 LSK C1 C17 C 0 1 Y N N -11.078 2.540 9.307 12.810 0.696 -0.288 C1 LSK 20 LSK C11 C18 C 0 1 N N N -12.164 2.720 10.309 14.217 0.624 -0.728 C11 LSK 21 LSK C12 C19 C 0 1 N N N -14.457 2.441 10.771 16.407 1.537 -0.995 C12 LSK 22 LSK C22 C20 C 0 1 N N R -2.736 -0.678 8.554 -9.278 -0.314 0.433 C22 LSK 23 LSK C23 C21 C 0 1 Y N N -4.051 1.358 9.273 -9.189 1.581 -1.231 C23 LSK 24 LSK C24 C22 C 0 1 Y N N -5.621 0.497 10.407 -10.900 2.773 -0.635 C24 LSK 25 LSK C25 C23 C 0 1 Y N N -6.721 0.171 11.230 -11.936 3.705 -0.449 C25 LSK 26 LSK C26 C24 C 0 1 Y N N -6.219 -2.051 10.832 -12.707 2.442 1.322 C26 LSK 27 LSK C27 C25 C 0 1 Y N N -4.904 -0.565 9.879 -10.839 1.668 0.230 C27 LSK 28 LSK C28 C26 C 0 1 N N N -1.935 4.036 8.132 -0.473 -1.267 0.393 C28 LSK 29 LSK C29 C27 C 0 1 N N N -0.501 4.549 8.215 -1.563 -1.960 -0.428 C29 LSK 30 LSK C7 C28 C 0 1 Y N N -7.889 1.752 6.661 8.823 0.932 0.967 C7 LSK 31 LSK C9 C29 C 0 1 Y N N -9.441 0.944 5.029 8.469 -1.315 0.157 C9 LSK 32 LSK N1 N3 N 0 1 N N N -6.925 0.790 4.801 6.657 -0.082 1.179 N1 LSK 33 LSK N10 N4 N 0 1 Y N N -5.158 -1.864 10.042 -11.754 1.544 1.186 N10 LSK 34 LSK N2 N5 N 0 1 N N N -4.823 1.569 5.138 4.402 -0.551 0.801 N2 LSK 35 LSK N3 N6 N 0 1 N N N 0.245 3.973 9.328 -2.875 -1.653 0.146 N3 LSK 36 LSK N4 N7 N 0 1 N N N 0.223 1.716 8.827 -5.246 -1.880 0.111 N4 LSK 37 LSK N5 N8 N 0 1 N N N 2.111 2.802 9.679 -3.925 -2.931 -1.480 N5 LSK 38 LSK N6 N9 N 0 1 Y N N -3.871 0.006 9.168 -9.750 0.935 -0.169 N6 LSK 39 LSK N8 N10 N 0 1 N N N -7.501 1.080 11.826 -12.048 4.813 -1.271 N8 LSK 40 LSK O2 O2 O 0 1 N N N -13.361 2.399 9.825 15.037 1.677 -0.538 O2 LSK 41 LSK O3 O3 O 0 1 N N N -11.988 3.099 11.441 14.637 -0.383 -1.261 O3 LSK 42 LSK O4 O4 O 0 1 N N N -6.084 2.473 3.487 6.000 -1.371 -0.506 O4 LSK 43 LSK O5 O5 O 0 1 N N N -0.725 -1.852 6.504 -9.328 -3.750 0.544 O5 LSK 44 LSK O6 O6 O 0 1 N N N -3.069 -0.705 6.173 -11.096 -1.925 0.706 O6 LSK 45 LSK O7 O7 O 0 1 N N N -1.619 -0.520 9.400 -7.893 -0.544 0.092 O7 LSK 46 LSK H1 H1 H 0 1 N N N -0.227 0.171 6.634 -8.822 -2.931 -1.299 H1 LSK 47 LSK H2 H2 H 0 1 N N N -0.003 -1.673 8.795 -7.563 -2.185 1.347 H2 LSK 48 LSK H3 H3 H 0 1 N N N 0.762 0.219 10.174 -6.412 -3.519 -0.483 H3 LSK 49 LSK H4 H4 H 0 1 N N N 1.566 0.143 8.569 -6.535 -2.086 -1.531 H4 LSK 50 LSK H5 H5 H 0 1 N N N -2.350 0.983 7.205 -10.425 -1.276 -1.153 H5 LSK 51 LSK H6 H6 H 0 1 N N N -1.926 4.129 5.987 0.937 -1.232 -1.236 H6 LSK 52 LSK H7 H7 H 0 1 N N N -2.991 5.335 6.787 1.059 -2.665 -0.188 H7 LSK 53 LSK H8 H8 H 0 1 N N N -2.847 2.239 5.041 3.520 -2.293 0.034 H8 LSK 54 LSK H9 H9 H 0 1 N N N -4.083 3.382 4.412 3.397 -0.859 -1.014 H9 LSK 55 LSK H10 H10 H 0 1 N N N -4.768 4.008 6.595 1.826 0.184 0.596 H10 LSK 56 LSK H11 H11 H 0 1 N N N -3.897 2.629 7.349 1.949 -1.250 1.644 H11 LSK 57 LSK H12 H12 H 0 1 N N N -9.591 3.245 10.684 12.997 2.702 0.477 H12 LSK 58 LSK H13 H13 H 0 1 N N N -11.500 1.052 5.516 10.115 -2.310 -0.730 H13 LSK 59 LSK H14 H14 H 0 1 N N N -12.347 1.851 7.749 12.347 -1.286 -0.961 H14 LSK 60 LSK H15 H15 H 0 1 N N N -7.404 3.223 10.066 10.690 3.096 2.300 H15 LSK 61 LSK H16 H16 H 0 1 N N N -15.391 2.159 10.263 16.957 2.453 -0.782 H16 LSK 62 LSK H17 H17 H 0 1 N N N -14.259 1.737 11.593 16.879 0.701 -0.478 H17 LSK 63 LSK H18 H18 H 0 1 N N N -14.553 3.459 11.176 16.415 1.350 -2.069 H18 LSK 64 LSK H19 H19 H 0 1 N N N -2.972 -1.745 8.430 -9.404 -0.284 1.515 H19 LSK 65 LSK H20 H20 H 0 1 N N N -3.405 2.076 8.789 -8.314 1.247 -1.767 H20 LSK 66 LSK H21 H21 H 0 1 N N N -6.489 -3.081 11.015 -13.435 2.311 2.109 H21 LSK 67 LSK H22 H22 H 0 1 N N N -2.517 4.525 8.927 -0.512 -1.622 1.422 H22 LSK 68 LSK H23 H23 H 0 1 N N N -1.917 2.950 8.306 -0.634 -0.189 0.374 H23 LSK 69 LSK H24 H24 H 0 1 N N N 0.017 4.297 7.278 -1.524 -1.604 -1.457 H24 LSK 70 LSK H25 H25 H 0 1 N N N -0.526 5.642 8.338 -1.401 -3.037 -0.409 H25 LSK 71 LSK H26 H26 H 0 1 N N N -6.872 1.968 6.952 8.446 1.827 1.439 H26 LSK 72 LSK H27 H27 H 0 1 N N N -9.631 0.523 4.052 7.802 -2.152 0.010 H27 LSK 73 LSK H28 H28 H 0 1 N N N -6.782 -0.187 4.645 6.422 0.404 1.985 H28 LSK 74 LSK H29 H29 H 0 1 N N N -4.655 0.739 5.669 4.161 -0.010 1.569 H29 LSK 75 LSK H30 H30 H 0 1 N N N 0.282 4.489 10.184 -2.941 -1.085 0.930 H30 LSK 76 LSK H31 H31 H 0 1 N N N -0.597 1.868 8.275 -5.312 -1.313 0.895 H31 LSK 77 LSK H32 H32 H 0 1 N N N 2.402 3.712 9.976 -3.056 -3.135 -1.860 H32 LSK 78 LSK H33 H33 H 0 1 N N N -8.208 0.615 12.358 -11.407 4.953 -1.985 H33 LSK 79 LSK H34 H34 H 0 1 N N N -6.946 1.648 12.434 -12.767 5.448 -1.133 H34 LSK 80 LSK H35 H35 H 0 1 N N N 0.187 -2.118 6.480 -10.158 -4.171 0.280 H35 LSK 81 LSK H36 H36 H 0 1 N N N -3.966 -0.398 6.233 -11.568 -2.715 0.409 H36 LSK 82 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LSK O4 C13 DOUB N N 1 LSK C13 N1 SING N N 2 LSK C13 N2 SING N N 3 LSK N1 C8 SING N N 4 LSK C9 C8 DOUB Y N 5 LSK C9 C10 SING Y N 6 LSK N2 C14 SING N N 7 LSK C14 C15 SING N N 8 LSK C8 C7 SING Y N 9 LSK C10 C5 DOUB Y N 10 LSK O6 C21 SING N N 11 LSK O5 C20 SING N N 12 LSK C15 C16 SING N N 13 LSK C7 C4 DOUB Y N 14 LSK C16 C28 SING N N 15 LSK C5 C4 SING Y N 16 LSK C5 C6 SING Y N 17 LSK C20 C21 SING N N 18 LSK C20 C19 SING N N 19 LSK C21 C22 SING N N 20 LSK C4 C3 SING Y N 21 LSK C6 C1 DOUB Y N 22 LSK C28 C29 SING N N 23 LSK C29 N3 SING N N 24 LSK C22 N6 SING N N 25 LSK C22 O7 SING N N 26 LSK C19 C18 SING N N 27 LSK C19 O7 SING N N 28 LSK N4 C18 SING N N 29 LSK N4 C17 SING N N 30 LSK C3 O1 SING N N 31 LSK C3 C2 DOUB Y N 32 LSK N6 C23 SING Y N 33 LSK N6 C27 SING Y N 34 LSK C23 N7 DOUB Y N 35 LSK C17 N3 SING N N 36 LSK C17 N5 DOUB N N 37 LSK C1 C2 SING Y N 38 LSK C1 C11 SING N N 39 LSK O2 C11 SING N N 40 LSK O2 C12 SING N N 41 LSK C27 N10 DOUB Y N 42 LSK C27 C24 SING Y N 43 LSK N7 C24 SING Y N 44 LSK N10 C26 SING Y N 45 LSK C11 O3 DOUB N N 46 LSK C24 C25 DOUB Y N 47 LSK C26 N9 DOUB Y N 48 LSK C25 N9 SING Y N 49 LSK C25 N8 SING N N 50 LSK C20 H1 SING N N 51 LSK C19 H2 SING N N 52 LSK C18 H3 SING N N 53 LSK C18 H4 SING N N 54 LSK C21 H5 SING N N 55 LSK C16 H6 SING N N 56 LSK C16 H7 SING N N 57 LSK C14 H8 SING N N 58 LSK C14 H9 SING N N 59 LSK C15 H10 SING N N 60 LSK C15 H11 SING N N 61 LSK C2 H12 SING N N 62 LSK C10 H13 SING N N 63 LSK C6 H14 SING N N 64 LSK O1 H15 SING N N 65 LSK C12 H16 SING N N 66 LSK C12 H17 SING N N 67 LSK C12 H18 SING N N 68 LSK C22 H19 SING N N 69 LSK C23 H20 SING N N 70 LSK C26 H21 SING N N 71 LSK C28 H22 SING N N 72 LSK C28 H23 SING N N 73 LSK C29 H24 SING N N 74 LSK C29 H25 SING N N 75 LSK C7 H26 SING N N 76 LSK C9 H27 SING N N 77 LSK N1 H28 SING N N 78 LSK N2 H29 SING N N 79 LSK N3 H30 SING N N 80 LSK N4 H31 SING N N 81 LSK N5 H32 SING N N 82 LSK N8 H33 SING N N 83 LSK N8 H34 SING N N 84 LSK O5 H35 SING N N 85 LSK O6 H36 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LSK InChI InChI 1.03 "InChI=1S/C29H36N10O7/c1-45-27(43)16-9-15-5-6-17(11-18(15)19(40)10-16)38-29(44)33-8-4-2-3-7-32-28(31)34-12-20-22(41)23(42)26(46-20)39-14-37-21-24(30)35-13-36-25(21)39/h5-6,9-11,13-14,20,22-23,26,40-42H,2-4,7-8,12H2,1H3,(H2,30,35,36)(H3,31,32,34)(H2,33,38,44)/t20-,22-,23-,26-/m1/s1" LSK InChIKey InChI 1.03 UBOFQOGNZXZZPE-HUBRGWSESA-N LSK SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCCNC(=N)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1" LSK SMILES CACTVS 3.385 "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCCNC(=N)NC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1" LSK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/NCCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)\NC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" LSK SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCCNC(=N)NCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id LSK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 6-[5-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]pentylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LSK "Create component" 2019-09-03 PDBE LSK "Initial release" 2022-03-23 RCSB ##