data_LT0 # _chem_comp.id LT0 _chem_comp.name D-tryptophyl-L-serine _chem_comp.type "peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C14 H17 N3 O4" _chem_comp.mon_nstd_parent_comp_id "TRP, SER" _chem_comp.pdbx_synonyms "(2~{S})-2-[[(2~{R})-2-azanyl-3-(1~{H}-indol-3-yl)propanoyl]amino]-3-oxidanyl-propanoic acid; D-Trp-Ser dipeptide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-12 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 291.302 _chem_comp.one_letter_code WS _chem_comp.three_letter_code LT0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AD8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LT0 C10 C1 C 0 1 N N R -2.058 -54.489 -17.923 0.011 1.127 -0.258 C10 LT0 1 LT0 C13 C2 C 0 1 Y N N 1.019 -52.981 -19.261 -3.170 1.867 0.622 C13 LT0 2 LT0 C15 C3 C 0 1 Y N N 0.083 -50.875 -19.328 -4.337 0.069 -0.053 C15 LT0 3 LT0 C17 C4 C 0 1 Y N N -1.326 -48.915 -18.890 -4.897 -2.176 -0.671 C17 LT0 4 LT0 C20 C5 C 0 1 Y N N -0.634 -51.652 -18.399 -3.013 -0.343 0.188 C20 LT0 5 LT0 C12 C6 C 0 1 Y N N -0.013 -52.980 -18.359 -2.290 0.853 0.624 C12 LT0 6 LT0 C19 C7 C 0 1 Y N N -1.728 -50.996 -17.739 -2.653 -1.678 -0.008 C19 LT0 7 LT0 C11 C8 C 0 1 N N N -0.507 -54.123 -17.570 -0.833 0.931 1.003 C11 LT0 8 LT0 N14 N1 N 0 1 Y N N 1.126 -51.712 -19.861 -4.398 1.417 0.221 N14 LT0 9 LT0 O01 O1 O 0 1 N N N -1.878 -56.831 -18.175 2.099 2.114 0.230 O01 LT0 10 LT0 C02 C9 C 0 1 N N N -2.530 -55.981 -17.603 1.474 1.083 0.104 C02 LT0 11 LT0 N03 N2 N 0 1 N N N -3.654 -56.373 -16.751 2.086 -0.103 0.290 N03 LT0 12 LT0 C04 C10 C 0 1 N N S -4.681 -55.510 -15.910 3.507 -0.147 0.642 C04 LT0 13 LT0 C05 C11 C 0 1 N N N -5.158 -53.993 -16.504 3.810 -1.451 1.382 C05 LT0 14 LT0 O06 O2 O 0 1 N N N -5.017 -52.866 -15.554 3.605 -2.557 0.501 O06 LT0 15 LT0 C07 C12 C 0 1 N N N -5.956 -56.519 -15.732 4.339 -0.077 -0.613 C07 LT0 16 LT0 O08 O3 O 0 1 N N N -5.910 -57.297 -14.772 3.799 0.001 -1.691 O08 LT0 17 LT0 O09 O4 O 0 1 N N N -6.854 -56.488 -16.600 5.678 -0.101 -0.533 O09 LT0 18 LT0 C16 C13 C 0 1 Y N N -0.255 -49.497 -19.574 -5.273 -0.864 -0.485 C16 LT0 19 LT0 C18 C14 C 0 1 Y N N -2.077 -49.681 -17.972 -3.589 -2.578 -0.433 C18 LT0 20 LT0 N21 N3 N 0 1 N N N -2.396 -54.174 -19.404 -0.304 2.429 -0.862 N21 LT0 21 LT0 H1 H1 H 0 1 N N N -2.678 -53.825 -17.303 -0.210 0.333 -0.971 H1 LT0 22 LT0 H2 H2 H 0 1 N N N 1.654 -53.827 -19.478 -2.943 2.885 0.901 H2 LT0 23 LT0 H3 H3 H 0 1 N N N -1.579 -47.880 -19.064 -5.626 -2.899 -1.006 H3 LT0 24 LT0 H4 H4 H 0 1 N N N -2.307 -51.561 -17.024 -1.638 -1.998 0.176 H4 LT0 25 LT0 H5 H5 H 0 1 N N N -0.436 -53.873 -16.501 -0.536 0.007 1.499 H5 LT0 26 LT0 H6 H6 H 0 1 N N N 0.122 -55.000 -17.784 -0.678 1.773 1.678 H6 LT0 27 LT0 H7 H7 H 0 1 N N N 1.808 -51.439 -20.540 -5.194 1.966 0.141 H7 LT0 28 LT0 H8 H8 H 0 1 N N N -3.799 -57.361 -16.689 1.586 -0.928 0.190 H8 LT0 29 LT0 H9 H9 H 0 1 N N N -4.250 -55.341 -14.912 3.748 0.700 1.285 H9 LT0 30 LT0 H10 H10 H 0 1 N N N -6.216 -54.060 -16.796 4.845 -1.444 1.722 H10 LT0 31 LT0 H11 H11 H 0 1 N N N -4.547 -53.768 -17.390 3.146 -1.543 2.242 H11 LT0 32 LT0 H12 H12 H 0 1 N N N -5.306 -52.062 -15.970 3.779 -3.419 0.905 H12 LT0 33 LT0 H13 H13 H 0 1 N N N -7.501 -57.157 -16.411 6.169 -0.054 -1.365 H13 LT0 34 LT0 H14 H14 H 0 1 N N N 0.316 -48.916 -20.283 -6.293 -0.562 -0.673 H14 LT0 35 LT0 H15 H15 H 0 1 N N N -2.918 -49.241 -17.456 -3.310 -3.611 -0.584 H15 LT0 36 LT0 H16 H16 H 0 1 N N N -3.351 -54.409 -19.586 -0.107 3.182 -0.220 H16 LT0 37 LT0 H17 H17 H 0 1 N N N -2.254 -53.200 -19.578 0.193 2.555 -1.730 H17 LT0 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LT0 C10 C11 SING N N 1 LT0 C10 C02 SING N N 2 LT0 C10 N21 SING N N 3 LT0 C13 C12 DOUB Y N 4 LT0 C13 N14 SING Y N 5 LT0 C15 C20 DOUB Y N 6 LT0 C15 N14 SING Y N 7 LT0 C15 C16 SING Y N 8 LT0 C17 C16 DOUB Y N 9 LT0 C17 C18 SING Y N 10 LT0 C20 C12 SING Y N 11 LT0 C20 C19 SING Y N 12 LT0 C12 C11 SING N N 13 LT0 C19 C18 DOUB Y N 14 LT0 O01 C02 DOUB N N 15 LT0 C02 N03 SING N N 16 LT0 N03 C04 SING N N 17 LT0 C04 C07 SING N N 18 LT0 C05 O06 SING N N 19 LT0 C07 O08 DOUB N N 20 LT0 C07 O09 SING N N 21 LT0 C04 C05 SING N N 22 LT0 C10 H1 SING N N 23 LT0 C13 H2 SING N N 24 LT0 C17 H3 SING N N 25 LT0 C19 H4 SING N N 26 LT0 C11 H5 SING N N 27 LT0 C11 H6 SING N N 28 LT0 N14 H7 SING N N 29 LT0 N03 H8 SING N N 30 LT0 C04 H9 SING N N 31 LT0 C05 H10 SING N N 32 LT0 C05 H11 SING N N 33 LT0 O06 H12 SING N N 34 LT0 O09 H13 SING N N 35 LT0 C16 H14 SING N N 36 LT0 C18 H15 SING N N 37 LT0 N21 H16 SING N N 38 LT0 N21 H17 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LT0 InChI InChI 1.06 "InChI=1S/C14H17N3O4/c15-10(13(19)17-12(7-18)14(20)21)5-8-6-16-11-4-2-1-3-9(8)11/h1-4,6,10,12,16,18H,5,7,15H2,(H,17,19)(H,20,21)/t10-,12+/m1/s1" LT0 InChIKey InChI 1.06 MYVYPSWUSKCCHG-PWSUYJOCSA-N LT0 SMILES_CANONICAL CACTVS 3.385 "N[C@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](CO)C(O)=O" LT0 SMILES CACTVS 3.385 "N[CH](Cc1c[nH]c2ccccc12)C(=O)N[CH](CO)C(O)=O" LT0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)C[C@H](C(=O)N[C@@H](CO)C(=O)O)N" LT0 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)CC(C(=O)NC(CO)C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id LT0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{R})-2-azanyl-3-(1~{H}-indol-3-yl)propanoyl]amino]-3-oxidanyl-propanoic acid" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 LT0 "(2~{S})-2-[[(2~{R})-2-azanyl-3-(1~{H}-indol-3-yl)propanoyl]amino]-3-oxidanyl-propanoic acid" PDB ? 2 LT0 "D-Trp-Ser dipeptide" AUTHOR ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LT0 "Create component" 2022-07-12 PDBE LT0 "Modify descriptor" 2022-08-22 RCSB LT0 "Initial release" 2022-10-12 RCSB #