data_LTE # _chem_comp.id LTE _chem_comp.name "1-[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propyl]-3-[(4~{S})-4-azanyl-5-oxidanylidene-pentyl]guanidine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H29 N9 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-09-04 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.480 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LTE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SQK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LTE C C C 0 1 N N N N Y Y 9.429 39.709 5.306 10.774 1.080 0.256 C LTE 1 LTE O O O 0 1 N N N N Y Y 9.437 38.854 6.145 11.260 1.944 -0.434 O LTE 2 LTE CA CA C 0 1 N N S N Y N 10.065 41.088 5.617 9.360 1.222 0.758 CA LTE 3 LTE CB CB C 0 1 N N N N N N 8.904 42.066 5.787 8.422 0.389 -0.117 CB LTE 4 LTE N N N 0 1 N N N Y Y N 10.903 41.498 4.542 8.960 2.634 0.700 N LTE 5 LTE CG CG C 0 1 N N N N N N 9.314 43.407 6.365 7.008 0.433 0.465 CG LTE 6 LTE CD CD C 0 1 N N N N N N 8.125 44.130 6.971 6.070 -0.399 -0.411 CD LTE 7 LTE NE NE N 0 1 N N N N N N 7.485 45.077 6.063 4.716 -0.357 0.147 NE LTE 8 LTE CZ CZ C 0 1 N N N N N N 6.787 46.126 6.488 3.695 -1.037 -0.475 CZ LTE 9 LTE NH1 NH1 N 0 1 N N N N N N 6.654 46.333 7.790 3.932 -1.719 -1.560 NH1 LTE 10 LTE NH2 NH2 N 0 1 N N N N N N 6.239 46.976 5.613 2.424 -0.998 0.049 NH2 LTE 11 LTE C24 C24 C 0 1 N N N N N N 6.120 46.755 4.176 1.336 -1.722 -0.614 C24 LTE 12 LTE C28 C28 C 0 1 N N N N N N 4.745 46.228 3.708 0.037 -1.515 0.166 C28 LTE 13 LTE C31 C31 C 0 1 N N N N N N 4.524 46.556 2.220 -1.099 -2.271 -0.525 C31 LTE 14 LTE C36 C36 C 0 1 N N R N N N 3.189 46.154 1.624 -2.399 -2.064 0.254 C36 LTE 15 LTE C38 C38 C 0 1 N N R N N N 2.863 46.098 -0.703 -4.242 -0.711 0.467 C38 LTE 16 LTE C39 C39 C 0 1 N N R N N N 3.464 44.760 -0.286 -4.784 -1.979 -0.235 C39 LTE 17 LTE C40 C40 C 0 1 N N S N N N 3.027 44.704 1.182 -3.543 -2.888 -0.377 C40 LTE 18 LTE C49 C49 C 0 1 Y N N N N N 4.835 46.925 -2.046 -4.435 1.290 -1.059 C49 LTE 19 LTE C50 C50 C 0 1 Y N N N N N 3.893 47.886 -3.690 -6.323 2.148 -0.427 C50 LTE 20 LTE C51 C51 C 0 1 Y N N N N N 2.877 47.328 -2.930 -6.102 1.002 0.355 C51 LTE 21 LTE C53 C53 C 0 1 Y N N N N N 1.320 48.118 -4.284 -8.085 1.389 1.450 C53 LTE 22 LTE C55 C55 C 0 1 Y N N N N N 3.512 48.605 -4.841 -7.497 2.888 -0.204 C55 LTE 23 LTE N47 N47 N 0 1 Y N N N N N 3.491 46.722 -1.862 -4.901 0.486 -0.062 N47 LTE 24 LTE N48 N48 N 0 1 Y N N N N N 5.131 47.615 -3.121 -5.270 2.264 -1.271 N48 LTE 25 LTE N52 N52 N 0 1 Y N N N N N 1.558 47.400 -3.181 -7.002 0.663 1.273 N52 LTE 26 LTE N54 N54 N 0 1 Y N N N N N 2.191 48.710 -5.102 -8.338 2.472 0.737 N54 LTE 27 LTE N57 N57 N 0 1 N N N N N N 4.369 49.179 -5.694 -7.772 4.022 -0.947 N57 LTE 28 LTE O37 O37 O 0 1 N N N N N N 3.042 46.948 0.416 -2.833 -0.690 0.153 O37 LTE 29 LTE O41 O41 O 0 1 N N N N N N 2.952 43.685 -1.066 -5.779 -2.612 0.572 O41 LTE 30 LTE O42 O42 O 0 1 N N N N N N 1.685 44.242 1.342 -3.733 -4.110 0.339 O42 LTE 31 LTE HA HA H 0 1 N N N N Y N 10.632 41.022 6.557 9.304 0.870 1.788 HA LTE 32 LTE HB3 HB3 H 0 1 N N N N N N 8.448 42.238 4.801 8.412 0.797 -1.128 HB3 LTE 33 LTE HB2 HB2 H 0 1 N N N N N N 8.162 41.610 6.460 8.772 -0.643 -0.146 HB2 LTE 34 LTE H2 H2 H 0 1 N Y N Y Y N 11.307 42.388 4.754 9.004 2.984 -0.245 H2 LTE 35 LTE H H3 H 0 1 N N N Y Y N 11.631 40.825 4.411 8.039 2.765 1.092 H LTE 36 LTE HG2 HG2 H 0 1 N N N N N N 10.071 43.245 7.146 7.018 0.026 1.476 HG2 LTE 37 LTE HG3 HG3 H 0 1 N N N N N N 9.741 44.028 5.564 6.658 1.465 0.493 HG3 LTE 38 LTE HD2 HD2 H 0 1 N N N N N N 8.470 44.680 7.859 6.059 0.008 -1.422 HD2 LTE 39 LTE HD3 HD3 H 0 1 N N N N N N 7.379 43.379 7.271 6.419 -1.431 -0.439 HD3 LTE 40 LTE HE HE H 0 1 N N N N N N 7.575 44.930 5.078 4.539 0.150 0.954 HE LTE 41 LTE HH11 HH11 H 0 0 N N N N N N 7.122 45.634 8.330 4.828 -1.747 -1.929 HH11 LTE 42 LTE HH21 HH21 H 0 0 N N N N N N 5.880 47.837 5.975 2.248 -0.490 0.856 HH21 LTE 43 LTE H30 H30 H 0 1 N N N N N N 6.885 46.023 3.879 1.215 -1.345 -1.629 H30 LTE 44 LTE H29 H29 H 0 1 N N N N N N 6.310 47.711 3.667 1.575 -2.785 -0.647 H29 LTE 45 LTE H32 H32 H 0 1 N N N N N N 3.952 46.702 4.305 0.158 -1.891 1.182 H32 LTE 46 LTE H33 H33 H 0 1 N N N N N N 4.708 45.138 3.848 -0.202 -0.451 0.199 H33 LTE 47 LTE H35 H35 H 0 1 N N N N N N 5.312 46.047 1.646 -1.221 -1.894 -1.541 H35 LTE 48 LTE H34 H34 H 0 1 N N N N N N 4.628 47.644 2.100 -0.861 -3.334 -0.558 H34 LTE 49 LTE H61 H61 H 0 1 N N N N N N 2.388 46.402 2.336 -2.263 -2.342 1.299 H61 LTE 50 LTE H62 H62 H 0 1 N N N N N N 1.790 45.954 -0.900 -4.390 -0.782 1.545 H62 LTE 51 LTE H44 H44 H 0 1 N N N N N N 4.561 44.809 -0.345 -5.188 -1.730 -1.216 H44 LTE 52 LTE H43 H43 H 0 1 N N N N N N 3.727 44.070 1.746 -3.334 -3.089 -1.428 H43 LTE 53 LTE H58 H58 H 0 1 N N N N N N 5.584 46.549 -1.365 -3.506 1.142 -1.590 H58 LTE 54 LTE H56 H56 H 0 1 N N N N N N 0.279 48.234 -4.549 -8.797 1.086 2.204 H56 LTE 55 LTE H59 H59 H 0 1 N N N N N N 3.860 49.620 -6.433 -7.150 4.316 -1.631 H59 LTE 56 LTE H60 H60 H 0 1 N N N N N N 4.913 49.864 -5.209 -8.585 4.524 -0.784 H60 LTE 57 LTE H46 H46 H 0 1 N N N N N N 3.347 42.870 -0.780 -6.153 -3.413 0.179 H46 LTE 58 LTE H45 H45 H 0 1 N N N N N N 1.463 44.226 2.266 -4.477 -4.640 0.022 H45 LTE 59 LTE OXT OXT O 0 1 N Y N N Y Y ? ? ? 11.492 -0.009 0.572 O1 LTE 60 LTE HXT HXT H 0 1 N Y N N Y Y ? ? ? 12.394 -0.056 0.227 H1 LTE 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LTE N57 C55 SING N N 1 LTE N54 C55 DOUB Y N 2 LTE N54 C53 SING Y N 3 LTE C55 C50 SING Y N 4 LTE C53 N52 DOUB Y N 5 LTE C50 N48 SING Y N 6 LTE C50 C51 DOUB Y N 7 LTE N52 C51 SING Y N 8 LTE N48 C49 DOUB Y N 9 LTE C51 N47 SING Y N 10 LTE C49 N47 SING Y N 11 LTE N47 C38 SING N N 12 LTE O41 C39 SING N N 13 LTE C38 C39 SING N N 14 LTE C38 O37 SING N N 15 LTE C39 C40 SING N N 16 LTE O37 C36 SING N N 17 LTE C40 O42 SING N N 18 LTE C40 C36 SING N N 19 LTE C36 C31 SING N N 20 LTE C31 C28 SING N N 21 LTE C28 C24 SING N N 22 LTE C24 NH2 SING N N 23 LTE N CA SING N N 24 LTE C CA SING N N 25 LTE C O DOUB N N 26 LTE NH2 CZ SING N N 27 LTE CA CB SING N N 28 LTE CB CG SING N N 29 LTE NE CZ SING N N 30 LTE NE CD SING N N 31 LTE CG CD SING N N 32 LTE CZ NH1 DOUB N N 33 LTE CA HA SING N N 34 LTE CB HB3 SING N N 35 LTE CB HB2 SING N N 36 LTE N H2 SING N N 37 LTE N H SING N N 38 LTE CG HG2 SING N N 39 LTE CG HG3 SING N N 40 LTE CD HD2 SING N N 41 LTE CD HD3 SING N N 42 LTE NE HE SING N N 43 LTE NH1 HH11 SING N N 44 LTE NH2 HH21 SING N N 45 LTE C24 H30 SING N N 46 LTE C24 H29 SING N N 47 LTE C28 H32 SING N N 48 LTE C28 H33 SING N N 49 LTE C31 H35 SING N N 50 LTE C31 H34 SING N N 51 LTE C36 H61 SING N N 52 LTE C38 H62 SING N N 53 LTE C39 H44 SING N N 54 LTE C40 H43 SING N N 55 LTE C49 H58 SING N N 56 LTE C53 H56 SING N N 57 LTE N57 H59 SING N N 58 LTE N57 H60 SING N N 59 LTE O41 H46 SING N N 60 LTE O42 H45 SING N N 61 LTE C OXT SING N N 62 LTE OXT HXT SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LTE InChI InChI 1.06 "InChI=1S/C18H29N9O5/c19-9(17(30)31)3-1-5-22-18(21)23-6-2-4-10-12(28)13(29)16(32-10)27-8-26-11-14(20)24-7-25-15(11)27/h7-10,12-13,16,28-29H,1-6,19H2,(H,30,31)(H2,20,24,25)(H3,21,22,23)/t9-,10+,12+,13+,16+/m0/s1" LTE InChIKey InChI 1.06 BMAYSUQGGXYXQD-UOYPZJKHSA-N LTE SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCNC(=N)NCCC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O" LTE SMILES CACTVS 3.385 "N[CH](CCCNC(=N)NCCC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O" LTE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/NCCC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)\NCCC[C@@H](C(=O)O)N" LTE SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CCCNC(=N)NCCCC(C(=O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id LTE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-5-[[~{N}-[3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]propyl]carbamimidoyl]amino]-2-azanyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LTE "Create component" 2019-09-04 PDBE LTE "Initial release" 2020-09-30 RCSB LTE "Modify backbone" 2023-11-03 PDBE LTE "Other modification" 2024-06-28 PDBE #