data_LUD # _chem_comp.id LUD _chem_comp.name "N-{4-[(6aR)-3-amino-1,9-dioxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]benzene-1-carbonyl}-L-glutamic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H21 N7 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-14 _chem_comp.pdbx_modified_date 2019-03-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 471.423 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LUD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6ECQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LUD N1 N1 N 0 1 N N N -1.058 50.838 15.985 7.346 0.426 -0.629 N1 LUD 1 LUD C2 C1 C 0 1 N N N 0.387 52.339 17.312 5.083 0.436 0.020 C2 LUD 2 LUD N3 N2 N 0 1 N N N -2.009 52.447 17.316 6.403 -1.562 0.241 N3 LUD 3 LUD C4 C2 C 0 1 N N N -2.055 53.523 18.305 5.202 -2.382 0.462 C4 LUD 4 LUD N5 N3 N 0 1 N N N 2.345 61.467 21.070 -4.361 -0.430 -0.303 N5 LUD 5 LUD C6 C3 C 0 1 N N N 1.234 54.609 18.002 2.685 -0.065 0.435 C6 LUD 6 LUD C7 C4 C 0 1 Y N N 1.373 56.822 19.214 0.550 -1.221 0.604 C7 LUD 7 LUD C9 C5 C 0 1 Y N N 1.683 58.668 20.748 -1.531 -0.218 -0.037 C9 LUD 8 LUD N N4 N 0 1 N N N -0.003 49.111 14.884 8.357 2.333 -1.471 N LUD 9 LUD C C6 C 0 1 N N N 0.064 50.211 15.637 7.253 1.695 -0.966 C LUD 10 LUD O O1 O 0 1 N N N 2.081 54.783 17.151 2.215 1.004 0.095 O LUD 11 LUD O6 O2 O 0 1 N N N 2.760 51.911 17.234 3.940 2.391 -0.208 O6 LUD 12 LUD C19 C7 C 0 1 N N N 1.594 51.656 16.908 4.990 1.781 -0.336 C19 LUD 13 LUD N6 N5 N 0 1 N N N 1.313 50.592 16.063 6.093 2.392 -0.827 N6 LUD 14 LUD N2 N6 N 0 1 N N N 0.470 53.440 18.191 3.993 -0.291 0.534 N2 LUD 15 LUD N4 N7 N 0 1 N N N 0.783 55.538 18.921 1.934 -1.135 0.747 N4 LUD 16 LUD C5 C8 C 0 1 N N N -0.375 55.030 19.662 2.808 -2.202 1.266 C5 LUD 17 LUD C3 C9 C 0 1 N N R -0.686 53.654 19.082 4.201 -1.557 1.279 C3 LUD 18 LUD C1 C10 C 0 1 N N N -0.877 51.880 16.839 6.295 -0.234 -0.132 C1 LUD 19 LUD C12 C11 C 0 1 Y N N 2.100 57.535 18.252 -0.114 -2.387 0.971 C12 LUD 20 LUD C11 C12 C 0 1 Y N N 2.604 58.795 18.540 -1.481 -2.474 0.836 C11 LUD 21 LUD C10 C13 C 0 1 Y N N 2.393 59.387 19.788 -2.202 -1.388 0.330 C10 LUD 22 LUD C8 C14 C 0 1 Y N N 1.185 57.405 20.469 -0.164 -0.139 0.101 C8 LUD 23 LUD C13 C15 C 0 1 N N N 2.905 60.772 20.065 -3.668 -1.477 0.185 C13 LUD 24 LUD O1 O3 O 0 1 N N N 3.816 61.252 19.397 -4.250 -2.496 0.505 O1 LUD 25 LUD C14 C16 C 0 1 N N S 3.156 61.989 22.166 -5.817 -0.518 -0.447 C14 LUD 26 LUD C18 C17 C 0 1 N N N 2.537 61.742 23.535 -6.152 -1.168 -1.764 C18 LUD 27 LUD O5 O4 O 0 1 N N N 1.628 60.947 23.718 -5.267 -1.522 -2.506 O5 LUD 28 LUD O4 O5 O 0 1 N N N 3.134 62.423 24.492 -7.435 -1.355 -2.113 O4 LUD 29 LUD C15 C18 C 0 1 N N N 3.557 63.467 21.974 -6.420 0.887 -0.404 C15 LUD 30 LUD C16 C19 C 0 1 N N N 5.007 63.706 22.441 -6.187 1.500 0.979 C16 LUD 31 LUD C17 C20 C 0 1 N N N 5.605 65.083 22.503 -6.780 2.885 1.021 C17 LUD 32 LUD O3 O6 O 0 1 N N N 5.621 65.755 23.526 -6.695 3.617 2.143 O3 LUD 33 LUD O2 O7 O 0 1 N N N 6.199 65.447 21.381 -7.333 3.335 0.046 O2 LUD 34 LUD H2 H2 H 0 1 N N N -2.266 54.472 17.791 4.759 -2.651 -0.498 H2 LUD 35 LUD H3 H3 H 0 1 N N N -2.857 53.311 19.027 5.468 -3.285 1.010 H3 LUD 36 LUD H4 H4 H 0 1 N N N 1.358 61.629 21.067 -3.897 0.383 -0.558 H4 LUD 37 LUD H5 H5 H 0 1 N N N 1.519 59.101 21.723 -2.086 0.622 -0.428 H5 LUD 38 LUD H6 H6 H 0 1 N N N -0.892 48.763 14.585 9.191 1.850 -1.577 H6 LUD 39 LUD H7 H7 H 0 1 N N N 0.835 48.635 14.619 8.303 3.268 -1.724 H7 LUD 40 LUD H8 H8 H 0 1 N N N 2.090 50.054 15.735 6.056 3.328 -1.079 H8 LUD 41 LUD H9 H9 H 0 1 N N N -0.135 54.947 20.732 2.508 -2.486 2.274 H9 LUD 42 LUD H10 H10 H 0 1 N N N -1.236 55.702 19.530 2.790 -3.067 0.603 H10 LUD 43 LUD H11 H11 H 0 1 N N N -0.674 52.911 19.893 4.565 -1.374 2.290 H11 LUD 44 LUD H12 H12 H 0 1 N N N 2.270 57.100 17.278 0.444 -3.226 1.361 H12 LUD 45 LUD H13 H13 H 0 1 N N N 3.168 59.327 17.788 -1.996 -3.379 1.120 H13 LUD 46 LUD H14 H14 H 0 1 N N N 0.645 56.865 21.232 0.354 0.767 -0.179 H14 LUD 47 LUD H15 H15 H 0 1 N N N 4.099 61.422 22.156 -6.227 -1.115 0.368 H15 LUD 48 LUD H16 H16 H 0 1 N N N 2.748 62.197 25.330 -7.601 -1.776 -2.968 H16 LUD 49 LUD H17 H17 H 0 1 N N N 3.474 63.728 20.909 -5.945 1.510 -1.162 H17 LUD 50 LUD H18 H18 H 0 1 N N N 2.879 64.104 22.562 -7.490 0.830 -0.600 H18 LUD 51 LUD H19 H19 H 0 1 N N N 5.075 63.294 23.459 -6.661 0.878 1.737 H19 LUD 52 LUD H20 H20 H 0 1 N N N 5.649 63.121 21.765 -5.116 1.558 1.175 H20 LUD 53 LUD H21 H21 H 0 1 N N N 6.116 66.551 23.375 -7.091 4.499 2.122 H21 LUD 54 LUD H1 H1 H 0 1 N N N -2.488 52.802 16.513 7.281 -1.957 0.359 H1 LUD 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LUD N C SING N N 1 LUD C N1 DOUB N N 2 LUD C N6 SING N N 3 LUD N1 C1 SING N N 4 LUD N6 C19 SING N N 5 LUD C1 C2 DOUB N N 6 LUD C1 N3 SING N N 7 LUD C19 O6 DOUB N N 8 LUD C19 C2 SING N N 9 LUD O C6 DOUB N N 10 LUD C2 N2 SING N N 11 LUD N3 C4 SING N N 12 LUD C6 N2 SING N N 13 LUD C6 N4 SING N N 14 LUD N2 C3 SING N N 15 LUD C12 C11 DOUB Y N 16 LUD C12 C7 SING Y N 17 LUD C4 C3 SING N N 18 LUD C11 C10 SING Y N 19 LUD N4 C7 SING N N 20 LUD N4 C5 SING N N 21 LUD C3 C5 SING N N 22 LUD C7 C8 DOUB Y N 23 LUD O1 C13 DOUB N N 24 LUD C10 C13 SING N N 25 LUD C10 C9 DOUB Y N 26 LUD C13 N5 SING N N 27 LUD C8 C9 SING Y N 28 LUD N5 C14 SING N N 29 LUD O2 C17 DOUB N N 30 LUD C15 C14 SING N N 31 LUD C15 C16 SING N N 32 LUD C14 C18 SING N N 33 LUD C16 C17 SING N N 34 LUD C17 O3 SING N N 35 LUD C18 O5 DOUB N N 36 LUD C18 O4 SING N N 37 LUD C4 H2 SING N N 38 LUD C4 H3 SING N N 39 LUD N5 H4 SING N N 40 LUD C9 H5 SING N N 41 LUD N H6 SING N N 42 LUD N H7 SING N N 43 LUD N6 H8 SING N N 44 LUD C5 H9 SING N N 45 LUD C5 H10 SING N N 46 LUD C3 H11 SING N N 47 LUD C12 H12 SING N N 48 LUD C11 H13 SING N N 49 LUD C8 H14 SING N N 50 LUD C14 H15 SING N N 51 LUD O4 H16 SING N N 52 LUD C15 H17 SING N N 53 LUD C15 H18 SING N N 54 LUD C16 H19 SING N N 55 LUD C16 H20 SING N N 56 LUD O3 H21 SING N N 57 LUD N3 H1 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LUD SMILES ACDLabs 12.01 "N=4C2=C(N3C(N(c1ccc(cc1)C(NC(C(=O)O)CCC(O)=O)=O)CC3CN2)=O)C(=O)NC=4N" LUD InChI InChI 1.03 "InChI=1S/C20H21N7O7/c21-19-24-15-14(17(31)25-19)27-11(7-22-15)8-26(20(27)34)10-3-1-9(2-4-10)16(30)23-12(18(32)33)5-6-13(28)29/h1-4,11-12H,5-8H2,(H,23,30)(H,28,29)(H,32,33)(H4,21,22,24,25,31)/t11-,12+/m1/s1" LUD InChIKey InChI 1.03 JSNFRYBHBVDHSG-NEPJUHHUSA-N LUD SMILES_CANONICAL CACTVS 3.385 "NC1=NC2=C(N3[C@H](CN2)CN(C3=O)c4ccc(cc4)C(=O)N[C@@H](CCC(O)=O)C(O)=O)C(=O)N1" LUD SMILES CACTVS 3.385 "NC1=NC2=C(N3[CH](CN2)CN(C3=O)c4ccc(cc4)C(=O)N[CH](CCC(O)=O)C(O)=O)C(=O)N1" LUD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)N2C[C@H]3CNC4=C(N3C2=O)C(=O)NC(=N4)N" LUD SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)N2CC3CNC4=C(N3C2=O)C(=O)NC(=N4)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LUD "SYSTEMATIC NAME" ACDLabs 12.01 "N-{4-[(6aR)-3-amino-1,9-dioxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]benzene-1-carbonyl}-L-glutamic acid" LUD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[4-[(6~{a}~{R})-3-azanyl-1,9-bis(oxidanylidene)-5,6,6~{a},7-tetrahydro-2~{H}-imidazo[1,5-f]pteridin-8-yl]phenyl]carbonylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LUD "Create component" 2019-03-14 RCSB LUD "Initial release" 2019-03-27 RCSB ##