data_LV9 # _chem_comp.id LV9 _chem_comp.name "N-(4-benzyloxan-4-yl)-N'-(pyridin-3-yl)urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H21 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-15 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 311.378 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LV9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GCW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LV9 N1 N1 N 0 1 Y N N N N N 7.185 0.702 17.165 5.016 -0.872 -0.662 N1 LV9 1 LV9 C4 C1 C 0 1 Y N N N N N 6.084 1.462 17.131 5.488 -0.126 0.318 C4 LV9 2 LV9 C5 C2 C 0 1 Y N N N N N 7.516 0.154 18.336 3.779 -0.744 -1.098 C5 LV9 3 LV9 C6 C3 C 0 1 N N N N N N 9.955 -0.943 23.116 -1.750 0.885 0.386 C6 LV9 4 LV9 C7 C4 C 0 1 N N N N N N 11.040 -1.758 22.377 -1.737 -0.217 1.447 C7 LV9 5 LV9 C8 C5 C 0 1 Y N N N N N 12.375 -1.880 23.073 -1.793 -1.564 0.773 C8 LV9 6 LV9 C10 C6 C 0 1 Y N N N N N 13.856 -3.042 24.587 -0.674 -3.445 -0.198 C10 LV9 7 LV9 C13 C7 C 0 1 Y N N N N N 13.411 -1.002 22.779 -3.015 -2.151 0.502 C13 LV9 8 LV9 C15 C8 C 0 1 N N N N N N 8.510 -0.808 25.159 -3.125 2.024 -1.357 C15 LV9 9 LV9 C17 C9 C 0 1 N N N N N N 10.468 0.460 23.482 -1.567 2.248 1.061 C17 LV9 10 LV9 N N2 N 0 1 N N N N N N 7.294 0.054 20.781 1.608 0.322 -0.998 N LV9 11 LV9 N2 N3 N 0 1 N N N N N N 8.769 -0.813 22.259 -0.661 0.662 -0.568 N2 LV9 12 LV9 C11 C10 C 0 1 Y N N N N N 14.868 -2.155 24.297 -1.896 -4.034 -0.465 C11 LV9 13 LV9 C1 C11 C 0 1 Y N N N N N 6.777 0.331 19.503 2.921 0.190 -0.533 C1 LV9 14 LV9 O1 O1 O 0 1 N N N N N N 9.046 0.491 25.479 -2.919 3.259 -0.668 O1 LV9 15 LV9 C2 C12 C 0 1 Y N N N N N 5.616 1.088 19.425 3.388 0.994 0.505 C2 LV9 16 LV9 C16 C13 C 0 1 N N N N N N 9.432 1.215 24.299 -1.660 3.350 0.003 C16 LV9 17 LV9 C9 C14 C 0 1 Y N N N N N 12.615 -2.905 23.981 -0.623 -2.210 0.420 C9 LV9 18 LV9 C12 C15 C 0 1 Y N N N N N 14.646 -1.135 23.393 -3.066 -3.386 -0.117 C12 LV9 19 LV9 C14 C16 C 0 1 N N N N N N 9.512 -1.659 24.402 -3.091 0.869 -0.353 C14 LV9 20 LV9 C C17 C 0 1 N N N N N N 8.608 -0.080 21.139 0.615 0.624 -0.138 C LV9 21 LV9 O O2 O 0 1 N N N N N N 9.537 0.470 20.539 0.872 0.864 1.026 O LV9 22 LV9 C3 C18 C 0 1 Y N N N N N 5.272 1.677 18.224 4.695 0.826 0.931 C3 LV9 23 LV9 H1 H1 H 0 1 N N N N N N 5.817 1.933 16.196 6.508 -0.261 0.646 H1 LV9 24 LV9 H2 H2 H 0 1 N N N N N N 8.404 -0.459 18.381 3.428 -1.373 -1.903 H2 LV9 25 LV9 H3 H3 H 0 1 N N N N N N 11.213 -1.279 21.402 -0.823 -0.144 2.037 H3 LV9 26 LV9 H4 H4 H 0 1 N N N N N N 10.649 -2.774 22.222 -2.602 -0.102 2.101 H4 LV9 27 LV9 H5 H5 H 0 1 N N N N N N 14.028 -3.846 25.287 0.241 -3.951 -0.470 H5 LV9 28 LV9 H6 H6 H 0 1 N N N N N N 13.252 -0.208 22.065 -3.929 -1.645 0.774 H6 LV9 29 LV9 H7 H7 H 0 1 N N N N N N 7.611 -0.679 24.538 -4.094 2.044 -1.856 H7 LV9 30 LV9 H8 H8 H 0 1 N N N N N N 8.240 -1.322 26.093 -2.337 1.886 -2.098 H8 LV9 31 LV9 H9 H9 H 0 1 N N N N N N 11.392 0.364 24.071 -2.349 2.393 1.807 H9 LV9 32 LV9 H10 H10 H 0 1 N N N N N N 10.678 1.020 22.559 -0.591 2.288 1.544 H10 LV9 33 LV9 H11 H11 H 0 1 N N N N N N 6.623 -0.058 21.514 1.412 0.195 -1.940 H11 LV9 34 LV9 H12 H12 H 0 1 N N N N N N 7.970 -1.342 22.546 -0.859 0.540 -1.510 H12 LV9 35 LV9 H13 H13 H 0 1 N N N N N N 15.831 -2.256 24.774 -1.936 -5.001 -0.945 H13 LV9 36 LV9 H14 H14 H 0 1 N N N N N N 4.988 1.215 20.295 2.746 1.730 0.965 H14 LV9 37 LV9 H15 H15 H 0 1 N N N N N N 9.855 2.185 24.600 -1.574 4.324 0.484 H15 LV9 38 LV9 H16 H16 H 0 1 N N N N N N 8.540 1.381 23.676 -0.853 3.228 -0.720 H16 LV9 39 LV9 H17 H17 H 0 1 N N N N N N 11.826 -3.603 24.218 0.332 -1.749 0.628 H17 LV9 40 LV9 H18 H18 H 0 1 N N N N N N 15.438 -0.438 23.164 -4.021 -3.845 -0.328 H18 LV9 41 LV9 H19 H19 H 0 1 N N N N N N 9.047 -2.621 24.140 -3.204 -0.077 -0.882 H19 LV9 42 LV9 H20 H20 H 0 1 N N N N N N 10.391 -1.838 25.039 -3.904 0.986 0.364 H20 LV9 43 LV9 H21 H21 H 0 1 N N N N N N 4.388 2.292 18.143 5.090 1.432 1.733 H21 LV9 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LV9 C4 N1 DOUB Y N 1 LV9 C4 C3 SING Y N 2 LV9 N1 C5 SING Y N 3 LV9 C3 C2 DOUB Y N 4 LV9 C5 C1 DOUB Y N 5 LV9 C2 C1 SING Y N 6 LV9 C1 N SING N N 7 LV9 O C DOUB N N 8 LV9 N C SING N N 9 LV9 C N2 SING N N 10 LV9 N2 C6 SING N N 11 LV9 C7 C8 SING N N 12 LV9 C7 C6 SING N N 13 LV9 C13 C8 DOUB Y N 14 LV9 C13 C12 SING Y N 15 LV9 C8 C9 SING Y N 16 LV9 C6 C17 SING N N 17 LV9 C6 C14 SING N N 18 LV9 C12 C11 DOUB Y N 19 LV9 C17 C16 SING N N 20 LV9 C9 C10 DOUB Y N 21 LV9 C11 C10 SING Y N 22 LV9 C16 O1 SING N N 23 LV9 C14 C15 SING N N 24 LV9 C15 O1 SING N N 25 LV9 C4 H1 SING N N 26 LV9 C5 H2 SING N N 27 LV9 C7 H3 SING N N 28 LV9 C7 H4 SING N N 29 LV9 C10 H5 SING N N 30 LV9 C13 H6 SING N N 31 LV9 C15 H7 SING N N 32 LV9 C15 H8 SING N N 33 LV9 C17 H9 SING N N 34 LV9 C17 H10 SING N N 35 LV9 N H11 SING N N 36 LV9 N2 H12 SING N N 37 LV9 C11 H13 SING N N 38 LV9 C2 H14 SING N N 39 LV9 C16 H15 SING N N 40 LV9 C16 H16 SING N N 41 LV9 C9 H17 SING N N 42 LV9 C12 H18 SING N N 43 LV9 C14 H19 SING N N 44 LV9 C14 H20 SING N N 45 LV9 C3 H21 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LV9 SMILES ACDLabs 12.01 "O=C(NC1(CCOCC1)Cc1ccccc1)Nc1cccnc1" LV9 InChI InChI 1.06 "InChI=1S/C18H21N3O2/c22-17(20-16-7-4-10-19-14-16)21-18(8-11-23-12-9-18)13-15-5-2-1-3-6-15/h1-7,10,14H,8-9,11-13H2,(H2,20,21,22)" LV9 InChIKey InChI 1.06 QJWPFRCAJGJSOH-UHFFFAOYSA-N LV9 SMILES_CANONICAL CACTVS 3.385 "O=C(Nc1cccnc1)NC2(CCOCC2)Cc3ccccc3" LV9 SMILES CACTVS 3.385 "O=C(Nc1cccnc1)NC2(CCOCC2)Cc3ccccc3" LV9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2(CCOCC2)NC(=O)Nc3cccnc3" LV9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2(CCOCC2)NC(=O)Nc3cccnc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LV9 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-benzyloxan-4-yl)-N'-(pyridin-3-yl)urea" LV9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-(phenylmethyl)oxan-4-yl]-3-pyridin-3-yl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LV9 "Create component" 2023-08-15 RCSB LV9 "Initial release" 2023-11-08 RCSB #