data_LVS
#
_chem_comp.id LVS
_chem_comp.name "4-IODO-3-NITROPHENYL ACETYL-LEUCINYL-LEUCINYL-LEUCINYL-VINYLSULFONE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H43 I N4 O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-03-04
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 722.632
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LVS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1KYI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LVS CB1 CB1 C 0 1 N N N N N N 170.713 90.924 81.536 7.042 -1.808 2.000 CB1 LVS 1
LVS CG1 CG1 C 0 1 N N N N N N 171.135 92.389 81.360 6.409 -0.702 1.132 CG1 LVS 2
LVS CD1 CD1 C 0 1 N N N N N N 170.266 93.016 80.312 4.912 -0.600 1.435 CD1 LVS 3
LVS CD2 CD2 C 0 1 N N N N N N 171.002 93.166 82.637 6.616 -0.944 -0.364 CD2 LVS 4
LVS C1 C1 C 0 1 N N N N N N 171.868 88.888 80.632 4.929 -3.156 2.135 C1 LVS 5
LVS O1 O1 O 0 1 N N N N N N 171.588 88.020 81.451 4.063 -3.413 1.302 O1 LVS 6
LVS N1 N1 N 0 1 N N N N N N 169.518 89.421 79.933 6.557 -3.688 0.473 N1 LVS 7
LVS CA1 CA1 C 0 1 N N S N N N 170.859 90.005 80.314 6.422 -3.200 1.821 CA1 LVS 8
LVS N2 N2 N 0 1 N N N N N N 173.039 88.887 80.005 4.681 -2.846 3.468 N2 LVS 9
LVS CA2 CA2 C 0 1 N N S N N N 173.965 87.790 80.268 3.360 -2.790 4.036 CA2 LVS 10
LVS CB2 CB2 C 0 1 N N N N N N 173.886 86.713 79.197 3.360 -3.101 5.539 CB2 LVS 11
LVS CG2 CG2 C 0 1 N N N N N N 172.522 86.112 78.887 1.968 -3.087 6.202 CG2 LVS 12
LVS CD3 CD3 C 0 1 N N N N N N 171.808 86.998 77.799 1.053 -4.098 5.505 CD3 LVS 13
LVS CD4 CD4 C 0 1 N N N N N N 172.724 84.676 78.425 1.322 -1.701 6.173 CD4 LVS 14
LVS C2 C2 C 0 1 N N N N N N 175.379 88.222 80.328 2.825 -1.382 3.790 C2 LVS 15
LVS O2 O2 O 0 1 N N N N N N 175.686 89.398 80.148 3.540 -0.383 3.801 O2 LVS 16
LVS N3 N3 N 0 1 N N N N N N 176.253 87.256 80.565 1.465 -1.383 3.506 N3 LVS 17
LVS CA3 CA3 C 0 1 N N S N N N 177.664 87.537 80.670 0.722 -0.188 3.185 CA3 LVS 18
LVS CS CS C 0 1 N N N N N N 178.654 86.425 80.654 0.242 0.412 4.481 CS LVS 19
LVS CB3 CB3 C 0 1 N N N N N N 177.918 88.422 81.915 -0.464 -0.493 2.256 CB3 LVS 20
LVS CG3 CG3 C 0 1 N N N N N N 177.174 88.199 83.250 -0.076 -1.055 0.871 CG3 LVS 21
LVS CD5 CD5 C 0 1 N N N N N N 177.594 86.930 83.972 0.863 -0.124 0.104 CD5 LVS 22
LVS CD6 CD6 C 0 1 N N N N N N 177.398 89.391 84.129 0.583 -2.427 1.038 CD6 LVS 23
LVS "C1'" C1* C 0 1 N N N N N N 177.650 85.908 77.851 0.781 3.735 6.632 "C1'" LVS 24
LVS S S S 0 1 N N N N N N 177.539 84.416 78.870 0.005 2.150 6.429 S LVS 25
LVS "O1'" O1* O 0 1 N N N N N N 176.196 83.782 78.923 -1.422 2.391 6.286 "O1'" LVS 26
LVS "O2'" O2* O 0 1 N N N N N N 178.536 83.396 78.456 0.499 1.296 7.497 "O2'" LVS 27
LVS "C2'" C2* C 0 1 N N N N N N 178.024 85.055 80.533 0.643 1.609 4.927 "C2'" LVS 28
LVS C3 C3 C 0 1 N N N N N N ? ? ? 7.627 -4.476 0.064 C3 LVS 29
LVS C4 C4 C 0 1 N N N N N N ? ? ? 7.515 -4.853 -1.401 C4 LVS 30
LVS C5 C5 C 0 1 Y N N N N N ? ? ? 8.678 -4.374 -2.231 C5 LVS 31
LVS C6 C6 C 0 1 Y N N N N N ? ? ? 9.788 -5.192 -2.385 C6 LVS 32
LVS C7 C7 C 0 1 Y N N N N N ? ? ? 10.865 -4.750 -3.153 C7 LVS 33
LVS C8 C8 C 0 1 Y N N N N N ? ? ? 10.820 -3.494 -3.759 C8 LVS 34
LVS C9 C9 C 0 1 Y N N N N N ? ? ? 9.699 -2.681 -3.597 C9 LVS 35
LVS C10 C10 C 0 1 Y N N N N N ? ? ? 8.622 -3.123 -2.828 C10 LVS 36
LVS N4 N4 N 1 1 N N N N N N ? ? ? 11.999 -5.595 -3.305 N4 LVS 37
LVS O3 O3 O 0 1 N N N N N N ? ? ? 12.965 -5.193 -3.996 O3 LVS 38
LVS O4 O4 O -1 1 N N N N N N ? ? ? 11.999 -6.715 -2.743 O4 LVS 39
LVS O5 O5 O 0 1 N N N N N N ? ? ? 11.883 -3.075 -4.508 O5 LVS 40
LVS O6 O6 O 0 1 N N N N N N ? ? ? 8.552 -4.835 0.787 O6 LVS 41
LVS I I I 0 1 N Y N N N N ? ? ? 9.575 -0.791 -4.484 I LVS 42
LVS HB11 1HB1 H 0 0 N N N N N N 171.341 90.501 82.334 8.115 -1.866 1.769 HB11 LVS 43
LVS HB12 2HB1 H 0 0 N N N N N N 169.634 90.956 81.748 6.980 -1.515 3.056 HB12 LVS 44
LVS HG1 HG1 H 0 1 N N N N N N 172.193 92.410 81.061 6.865 0.263 1.390 HG1 LVS 45
LVS HD11 1HD1 H 0 0 N N N N N N 169.255 93.170 80.717 4.451 0.208 0.857 HD11 LVS 46
LVS HD12 2HD1 H 0 0 N N N N N N 170.693 93.985 80.014 4.744 -0.387 2.496 HD12 LVS 47
LVS HD13 3HD1 H 0 0 N N N N N N 170.213 92.353 79.436 4.392 -1.532 1.190 HD13 LVS 48
LVS HD21 1HD2 H 0 0 N N N N N N 170.969 92.470 83.488 6.237 -1.927 -0.663 HD21 LVS 49
LVS HD22 2HD2 H 0 0 N N N N N N 171.864 93.840 82.747 6.093 -0.186 -0.956 HD22 LVS 50
LVS HD23 3HD2 H 0 0 N N N N N N 170.075 93.757 82.611 7.675 -0.890 -0.634 HD23 LVS 51
LVS HN1 HN1 H 0 1 N N N N N N 169.066 89.703 80.779 5.841 -3.446 -0.208 HN1 LVS 52
LVS HA1 HA1 H 0 1 N N N N N N 171.231 90.590 79.460 6.898 -3.936 2.477 HA1 LVS 53
LVS HN2 HN2 H 0 1 N N N N N N 173.280 89.620 79.369 5.470 -2.658 4.083 HN2 LVS 54
LVS HA2 HA2 H 0 1 N N N N N N 173.652 87.400 81.248 2.742 -3.503 3.482 HA2 LVS 55
LVS HB21 1HB2 H 0 0 N N N N N N 174.251 87.167 78.264 4.001 -2.371 6.052 HB21 LVS 56
LVS HB22 2HB2 H 0 0 N N N N N N 174.476 85.876 79.598 3.828 -4.080 5.707 HB22 LVS 57
LVS HG2 HG2 H 0 1 N N N N N N 171.875 86.096 79.777 2.065 -3.398 7.250 HG2 LVS 58
LVS HD31 1HD3 H 0 0 N N N N N N 171.641 88.009 78.200 0.070 -4.131 5.987 HD31 LVS 59
LVS HD32 2HD3 H 0 0 N N N N N N 172.442 87.059 76.902 1.480 -5.105 5.550 HD32 LVS 60
LVS HD33 3HD3 H 0 0 N N N N N N 170.841 86.545 77.534 0.905 -3.839 4.451 HD33 LVS 61
LVS HD41 1HD4 H 0 0 N N N N N N 172.773 84.647 77.326 1.260 -1.314 5.150 HD41 LVS 62
LVS HD42 2HD4 H 0 0 N N N N N N 173.663 84.285 78.844 0.306 -1.738 6.581 HD42 LVS 63
LVS HD43 3HD4 H 0 0 N N N N N N 171.882 84.058 78.771 1.886 -0.985 6.777 HD43 LVS 64
LVS HN3 HN3 H 0 1 N N N N N N 175.930 86.316 80.673 0.958 -2.264 3.511 HN3 LVS 65
LVS HA3 HA3 H 0 1 N N N N N N 177.863 88.031 79.708 1.423 0.496 2.696 HA3 LVS 66
LVS HCS HCS H 0 1 N N N N N N 179.720 86.582 80.722 -0.460 -0.178 5.067 HCS LVS 67
LVS HB31 1HB3 H 0 0 N N N N N N 178.985 88.296 82.150 -1.136 -1.205 2.753 HB31 LVS 68
LVS HB32 2HB3 H 0 0 N N N N N N 177.535 89.401 81.591 -1.047 0.427 2.104 HB32 LVS 69
LVS HG3 HG3 H 0 1 N N N N N N 176.106 88.076 83.017 -0.984 -1.196 0.273 HG3 LVS 70
LVS HD51 1HD5 H 0 0 N N N N N N 177.696 86.111 83.245 0.370 0.818 -0.154 HD51 LVS 71
LVS HD52 2HD5 H 0 0 N N N N N N 178.559 87.096 84.474 1.186 -0.585 -0.836 HD52 LVS 72
LVS HD53 3HD5 H 0 0 N N N N N N 176.832 86.664 84.720 1.759 0.108 0.690 HD53 LVS 73
LVS HD61 1HD6 H 0 0 N N N N N N 177.453 89.068 85.179 -0.090 -3.123 1.549 HD61 LVS 74
LVS HD62 2HD6 H 0 0 N N N N N N 178.341 89.882 83.847 0.831 -2.861 0.063 HD62 LVS 75
LVS HD63 3HD6 H 0 0 N N N N N N 176.565 90.098 84.006 1.507 -2.356 1.622 HD63 LVS 76
LVS "H1'1" 1H1* H 0 0 N N N N N N 177.673 86.795 78.501 1.432 3.911 5.774 "H1'1" LVS 77
LVS "H1'2" 2H1* H 0 0 N N N N N N 178.569 85.872 77.248 0.002 4.496 6.683 "H1'2" LVS 78
LVS "H1'3" 3H1* H 0 0 N N N N N N 176.776 85.963 77.186 1.362 3.718 7.555 "H1'3" LVS 79
LVS "H2'" H2* H 0 1 N N N N N N 177.859 84.454 81.415 1.341 2.233 4.385 "H2'" LVS 80
LVS HC41 1HC4 H 0 0 N N N N N N ? ? ? 6.582 -4.439 -1.803 HC41 LVS 81
LVS HC42 2HC4 H 0 0 N N N N N N ? ? ? 7.430 -5.944 -1.477 HC42 LVS 82
LVS HC6 HC6 H 0 1 N N N N N N ? ? ? 9.818 -6.170 -1.909 HC6 LVS 83
LVS H10 H10 H 0 1 N N N N N N ? ? ? 7.740 -2.500 -2.694 H10 LVS 84
LVS HO5 HO5 H 0 1 N N N N N N ? ? ? 11.571 -2.686 -5.338 HO5 LVS 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LVS CB1 CG1 SING N N 1
LVS CB1 CA1 SING N N 2
LVS CB1 HB11 SING N N 3
LVS CB1 HB12 SING N N 4
LVS CG1 CD1 SING N N 5
LVS CG1 CD2 SING N N 6
LVS CG1 HG1 SING N N 7
LVS CD1 HD11 SING N N 8
LVS CD1 HD12 SING N N 9
LVS CD1 HD13 SING N N 10
LVS CD2 HD21 SING N N 11
LVS CD2 HD22 SING N N 12
LVS CD2 HD23 SING N N 13
LVS C1 O1 DOUB N N 14
LVS C1 CA1 SING N N 15
LVS C1 N2 SING N N 16
LVS N1 CA1 SING N N 17
LVS N1 C3 SING N N 18
LVS N1 HN1 SING N N 19
LVS CA1 HA1 SING N N 20
LVS N2 CA2 SING N N 21
LVS N2 HN2 SING N N 22
LVS CA2 CB2 SING N N 23
LVS CA2 C2 SING N N 24
LVS CA2 HA2 SING N N 25
LVS CB2 CG2 SING N N 26
LVS CB2 HB21 SING N N 27
LVS CB2 HB22 SING N N 28
LVS CG2 CD3 SING N N 29
LVS CG2 CD4 SING N N 30
LVS CG2 HG2 SING N N 31
LVS CD3 HD31 SING N N 32
LVS CD3 HD32 SING N N 33
LVS CD3 HD33 SING N N 34
LVS CD4 HD41 SING N N 35
LVS CD4 HD42 SING N N 36
LVS CD4 HD43 SING N N 37
LVS C2 O2 DOUB N N 38
LVS C2 N3 SING N N 39
LVS N3 CA3 SING N N 40
LVS N3 HN3 SING N N 41
LVS CA3 CS SING N N 42
LVS CA3 CB3 SING N N 43
LVS CA3 HA3 SING N N 44
LVS CS "C2'" DOUB N N 45
LVS CS HCS SING N N 46
LVS CB3 CG3 SING N N 47
LVS CB3 HB31 SING N N 48
LVS CB3 HB32 SING N N 49
LVS CG3 CD5 SING N N 50
LVS CG3 CD6 SING N N 51
LVS CG3 HG3 SING N N 52
LVS CD5 HD51 SING N N 53
LVS CD5 HD52 SING N N 54
LVS CD5 HD53 SING N N 55
LVS CD6 HD61 SING N N 56
LVS CD6 HD62 SING N N 57
LVS CD6 HD63 SING N N 58
LVS "C1'" S SING N N 59
LVS "C1'" "H1'1" SING N N 60
LVS "C1'" "H1'2" SING N N 61
LVS "C1'" "H1'3" SING N N 62
LVS S "O1'" DOUB N N 63
LVS S "O2'" DOUB N N 64
LVS S "C2'" SING N N 65
LVS "C2'" "H2'" SING N N 66
LVS C3 C4 SING N N 67
LVS C3 O6 DOUB N N 68
LVS C4 C5 SING N N 69
LVS C4 HC41 SING N N 70
LVS C4 HC42 SING N N 71
LVS C5 C6 DOUB Y N 72
LVS C5 C10 SING Y N 73
LVS C6 C7 SING Y N 74
LVS C6 HC6 SING N N 75
LVS C7 C8 DOUB Y N 76
LVS C7 N4 SING N N 77
LVS C8 C9 SING Y N 78
LVS C8 O5 SING N N 79
LVS C9 C10 DOUB Y N 80
LVS C9 I SING N N 81
LVS C10 H10 SING N N 82
LVS N4 O3 DOUB N N 83
LVS N4 O4 SING N N 84
LVS O5 HO5 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LVS SMILES ACDLabs 10.04 "O=[N+]([O-])c1cc(cc(I)c1O)CC(=O)NC(C(=O)NC(C(=O)NC(\C=C/S(=O)(=O)C)CC(C)C)CC(C)C)CC(C)C"
LVS SMILES_CANONICAL CACTVS 3.341 "CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)Cc1cc(I)c(O)c(c1)[N+]([O-])=O)\C=C/[S](C)(=O)=O"
LVS SMILES CACTVS 3.341 "CC(C)C[CH](NC(=O)[CH](CC(C)C)NC(=O)[CH](CC(C)C)NC(=O)Cc1cc(I)c(O)c(c1)[N+]([O-])=O)C=C[S](C)(=O)=O"
LVS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)C[C@@H](C=CS(=O)(=O)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)Cc1cc(c(c(c1)I)O)[N+](=O)[O-]"
LVS SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)CC(C=CS(=O)(=O)C)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)Cc1cc(c(c(c1)I)O)[N+](=O)[O-]"
LVS InChI InChI 1.03 "InChI=1S/C28H43IN4O8S/c1-16(2)10-20(8-9-42(7,40)41)30-27(36)23(12-18(5)6)32-28(37)22(11-17(3)4)31-25(34)15-19-13-21(29)26(35)24(14-19)33(38)39/h8-9,13-14,16-18,20,22-23,35H,10-12,15H2,1-7H3,(H,30,36)(H,31,34)(H,32,37)/t20-,22+,23+/m1/s1"
LVS InChIKey InChI 1.03 RSYTXXARKSZDKY-PUHATCMVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LVS "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(4-hydroxy-3-iodo-5-nitrophenyl)acetyl]-L-leucyl-N-{(1S)-3-methyl-1-[(Z)-2-(methylsulfonyl)ethenyl]butyl}-L-leucinamide"
LVS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[2-(4-hydroxy-3-iodo-5-nitro-phenyl)ethanoylamino]-4-methyl-N-[(2S)-4-methyl-1-[[(3S)-5-methyl-1-methylsulfonyl-hex-1-en-3-yl]amino]-1-oxo-pentan-2-yl]pentanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LVS "Create component" 2002-03-04 RCSB
LVS "Modify descriptor" 2011-06-04 RCSB
LVS "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id LVS
_pdbx_chem_comp_pcm.modified_residue_id THR
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom CS
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG1
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#