data_LWK # _chem_comp.id LWK _chem_comp.name "(3S)-3-[5-(1-benzylpiperidin-4-yl)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-09 _chem_comp.pdbx_modified_date 2023-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 417.500 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LWK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7U8F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LWK C1 C1 C 0 1 Y N N -81.438 -97.862 77.168 -0.438 -1.578 0.015 C1 LWK 1 LWK C2 C2 C 0 1 Y N N -82.569 -97.364 76.532 -0.451 -0.263 0.445 C2 LWK 2 LWK C3 C3 C 0 1 Y N N -82.449 -96.556 75.392 0.732 0.451 0.540 C3 LWK 3 LWK C11 C4 C 0 1 N N S -78.346 -94.574 73.120 5.619 -0.796 -0.436 C11 LWK 4 LWK C13 C5 C 0 1 N N N -78.277 -95.217 71.730 5.981 -0.085 -1.744 C13 LWK 5 LWK C14 C6 C 0 1 N N N -77.578 -94.307 70.733 5.556 1.383 -1.636 C14 LWK 6 LWK C15 C7 C 0 1 N N N -78.305 -92.988 70.624 6.197 1.995 -0.419 C15 LWK 7 LWK C17 C8 C 0 1 N N N -78.915 -93.151 73.015 6.257 -0.067 0.717 C17 LWK 8 LWK C20 C9 C 0 1 N N N -84.944 -96.646 76.834 -2.689 0.392 -0.404 C20 LWK 9 LWK C21 C10 C 0 1 N N N -86.302 -97.120 77.380 -4.035 1.006 -0.009 C21 LWK 10 LWK C23 C11 C 0 1 N N N -85.731 -99.389 76.904 -3.772 0.254 2.279 C23 LWK 11 LWK C24 C12 C 0 1 N N N -84.341 -99.001 76.411 -2.419 -0.382 1.953 C24 LWK 12 LWK C25 C13 C 0 1 N N N -88.125 -98.737 76.742 -5.981 0.703 1.398 C25 LWK 13 LWK C26 C14 C 0 1 Y N N -88.728 -99.131 75.375 -6.891 0.433 0.226 C26 LWK 14 LWK C27 C15 C 0 1 Y N N -88.905 -98.181 74.352 -7.579 -0.763 0.146 C27 LWK 15 LWK C28 C16 C 0 1 Y N N -89.402 -98.540 73.086 -8.413 -1.010 -0.928 C28 LWK 16 LWK C29 C17 C 0 1 Y N N -89.732 -99.858 72.817 -8.558 -0.061 -1.923 C29 LWK 17 LWK C30 C18 C 0 1 Y N N -89.569 -100.816 73.826 -7.870 1.135 -1.843 C30 LWK 18 LWK C10 C19 C 0 1 N N N -83.897 -97.715 77.088 -1.757 0.394 0.811 C10 LWK 19 LWK C31 C20 C 0 1 Y N N -89.074 -100.464 75.099 -7.040 1.385 -0.765 C31 LWK 20 LWK C4 C21 C 0 1 Y N N -81.160 -96.250 74.964 1.924 -0.147 0.206 C4 LWK 21 LWK C5 C22 C 0 1 Y N N -80.020 -96.719 75.644 1.949 -1.474 -0.229 C5 LWK 22 LWK C6 C23 C 0 1 Y N N -80.148 -97.542 76.738 0.754 -2.189 -0.317 C6 LWK 23 LWK C7 C24 C 0 1 N N N -80.727 -95.434 73.782 3.354 0.333 0.196 C7 LWK 24 LWK C9 C25 C 0 1 N N N -78.795 -96.130 75.027 3.350 -1.842 -0.512 C9 LWK 25 LWK N16 N1 N 0 1 N N N -78.893 -92.476 71.786 6.496 1.253 0.659 N16 LWK 26 LWK N22 N2 N 0 1 N N N -86.673 -98.299 76.557 -4.627 0.227 1.086 N22 LWK 27 LWK N8 N3 N 0 1 N N N -79.247 -95.362 73.956 4.164 -0.800 -0.268 N8 LWK 28 LWK O12 O1 O 0 1 N N N -77.610 -96.199 75.335 3.716 -2.931 -0.910 O12 LWK 29 LWK O18 O2 O 0 1 N N N -79.367 -92.566 73.988 6.560 -0.684 1.716 O18 LWK 30 LWK O19 O3 O 0 1 N N N -78.433 -92.350 69.588 6.448 3.181 -0.411 O19 LWK 31 LWK H1 H1 H 0 1 N N N -81.560 -98.515 78.019 -1.363 -2.129 -0.057 H1 LWK 32 LWK H2 H2 H 0 1 N N N -83.319 -96.187 74.869 0.718 1.478 0.876 H2 LWK 33 LWK H3 H3 H 0 1 N N N -77.339 -94.537 73.561 5.985 -1.822 -0.466 H3 LWK 34 LWK H4 H4 H 0 1 N N N -79.299 -95.417 71.377 7.057 -0.144 -1.907 H4 LWK 35 LWK H5 H5 H 0 1 N N N -77.722 -96.164 71.801 5.459 -0.560 -2.575 H5 LWK 36 LWK H6 H6 H 0 1 N N N -77.562 -94.794 69.747 5.878 1.922 -2.527 H6 LWK 37 LWK H7 H7 H 0 1 N N N -76.547 -94.126 71.069 4.471 1.442 -1.546 H7 LWK 38 LWK H8 H8 H 0 1 N N N -84.649 -95.716 77.341 -2.842 -0.632 -0.743 H8 LWK 39 LWK H9 H9 H 0 1 N N N -85.027 -96.463 75.752 -2.243 0.980 -1.206 H9 LWK 40 LWK H10 H10 H 0 1 N N N -87.056 -96.326 77.276 -3.883 2.034 0.317 H10 LWK 41 LWK H11 H11 H 0 1 N N N -86.212 -97.404 78.439 -4.706 0.993 -0.868 H11 LWK 42 LWK H12 H12 H 0 1 N N N -86.050 -100.323 76.419 -4.252 -0.306 3.082 H12 LWK 43 LWK H13 H13 H 0 1 N N N -85.712 -99.530 77.995 -3.622 1.286 2.595 H13 LWK 44 LWK H14 H14 H 0 1 N N N -83.630 -99.805 76.652 -1.779 -0.348 2.835 H14 LWK 45 LWK H15 H15 H 0 1 N N N -84.368 -98.850 75.322 -2.567 -1.419 1.651 H15 LWK 46 LWK H16 H16 H 0 1 N N N -88.705 -97.907 77.172 -5.953 1.774 1.597 H16 LWK 47 LWK H17 H17 H 0 1 N N N -88.162 -99.602 77.421 -6.357 0.179 2.277 H17 LWK 48 LWK H18 H18 H 0 1 N N N -88.652 -97.149 74.544 -7.465 -1.504 0.923 H18 LWK 49 LWK H19 H19 H 0 1 N N N -89.527 -97.787 72.322 -8.950 -1.945 -0.991 H19 LWK 50 LWK H20 H20 H 0 1 N N N -90.109 -100.142 71.846 -9.208 -0.255 -2.763 H20 LWK 51 LWK H21 H21 H 0 1 N N N -89.828 -101.845 73.625 -7.983 1.876 -2.620 H21 LWK 52 LWK H22 H22 H 0 1 N N N -83.811 -97.888 78.171 -1.572 1.421 1.127 H22 LWK 53 LWK H23 H23 H 0 1 N N N -88.961 -101.220 75.862 -6.503 2.319 -0.703 H23 LWK 54 LWK H24 H24 H 0 1 N N N -79.279 -97.929 77.249 0.760 -3.216 -0.652 H24 LWK 55 LWK H25 H25 H 0 1 N N N -81.178 -94.431 73.806 3.461 1.174 -0.488 H25 LWK 56 LWK H26 H26 H 0 1 N N N -80.991 -95.933 72.838 3.658 0.624 1.201 H26 LWK 57 LWK H27 H27 H 0 1 N N N -79.323 -91.575 71.737 6.901 1.687 1.426 H27 LWK 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LWK O19 C15 DOUB N N 1 LWK C15 C14 SING N N 2 LWK C15 N16 SING N N 3 LWK C14 C13 SING N N 4 LWK C13 C11 SING N N 5 LWK N16 C17 SING N N 6 LWK C29 C28 DOUB Y N 7 LWK C29 C30 SING Y N 8 LWK C17 C11 SING N N 9 LWK C17 O18 DOUB N N 10 LWK C28 C27 SING Y N 11 LWK C11 N8 SING N N 12 LWK C7 N8 SING N N 13 LWK C7 C4 SING N N 14 LWK C30 C31 DOUB Y N 15 LWK N8 C9 SING N N 16 LWK C27 C26 DOUB Y N 17 LWK C4 C3 DOUB Y N 18 LWK C4 C5 SING Y N 19 LWK C9 O12 DOUB N N 20 LWK C9 C5 SING N N 21 LWK C31 C26 SING Y N 22 LWK C26 C25 SING N N 23 LWK C3 C2 SING Y N 24 LWK C5 C6 DOUB Y N 25 LWK C24 C23 SING N N 26 LWK C24 C10 SING N N 27 LWK C2 C10 SING N N 28 LWK C2 C1 DOUB Y N 29 LWK N22 C25 SING N N 30 LWK N22 C23 SING N N 31 LWK N22 C21 SING N N 32 LWK C6 C1 SING Y N 33 LWK C20 C10 SING N N 34 LWK C20 C21 SING N N 35 LWK C1 H1 SING N N 36 LWK C3 H2 SING N N 37 LWK C11 H3 SING N N 38 LWK C13 H4 SING N N 39 LWK C13 H5 SING N N 40 LWK C14 H6 SING N N 41 LWK C14 H7 SING N N 42 LWK C20 H8 SING N N 43 LWK C20 H9 SING N N 44 LWK C21 H10 SING N N 45 LWK C21 H11 SING N N 46 LWK C23 H12 SING N N 47 LWK C23 H13 SING N N 48 LWK C24 H14 SING N N 49 LWK C24 H15 SING N N 50 LWK C25 H16 SING N N 51 LWK C25 H17 SING N N 52 LWK C27 H18 SING N N 53 LWK C28 H19 SING N N 54 LWK C29 H20 SING N N 55 LWK C30 H21 SING N N 56 LWK C10 H22 SING N N 57 LWK C31 H23 SING N N 58 LWK C6 H24 SING N N 59 LWK C7 H25 SING N N 60 LWK C7 H26 SING N N 61 LWK N16 H27 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LWK SMILES ACDLabs 12.01 "O=C1NC(=O)CCC1N1Cc2cc(ccc2C1=O)C1CCN(Cc2ccccc2)CC1" LWK InChI InChI 1.03 "InChI=1S/C25H27N3O3/c29-23-9-8-22(24(30)26-23)28-16-20-14-19(6-7-21(20)25(28)31)18-10-12-27(13-11-18)15-17-4-2-1-3-5-17/h1-7,14,18,22H,8-13,15-16H2,(H,26,29,30)/t22-/m0/s1" LWK InChIKey InChI 1.03 OMISHRJQMYQPMG-QFIPXVFZSA-N LWK SMILES_CANONICAL CACTVS 3.385 "O=C1CC[C@H](N2Cc3cc(ccc3C2=O)C4CCN(CC4)Cc5ccccc5)C(=O)N1" LWK SMILES CACTVS 3.385 "O=C1CC[CH](N2Cc3cc(ccc3C2=O)C4CCN(CC4)Cc5ccccc5)C(=O)N1" LWK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCC(CC2)c3ccc4c(c3)CN(C4=O)[C@H]5CCC(=O)NC5=O" LWK SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCC(CC2)c3ccc4c(c3)CN(C4=O)C5CCC(=O)NC5=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LWK "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-[5-(1-benzylpiperidin-4-yl)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" LWK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[3-oxidanylidene-6-[1-(phenylmethyl)piperidin-4-yl]-1~{H}-isoindol-2-yl]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LWK "Create component" 2022-03-09 RCSB LWK "Initial release" 2023-03-08 RCSB #