data_LXD # _chem_comp.id LXD _chem_comp.name "(4~{S})-2-azanyl-4-[3-[6-[(2~{S})-2,4-dimethylpiperazin-1-yl]-4-(4-prop-2-enoylpiperazin-1-yl)pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H37 N9 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-18 _chem_comp.pdbx_modified_date 2022-11-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 587.739 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LXD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AFB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LXD C4 C1 C 0 1 Y N N 11.694 -10.621 20.968 3.386 -0.111 0.009 C4 LXD 1 LXD C5 C2 C 0 1 Y N N 12.893 -11.108 20.456 2.410 0.785 -0.416 C5 LXD 2 LXD C6 C3 C 0 1 Y N N 14.075 -10.577 20.972 1.107 0.317 -0.586 C6 LXD 3 LXD C8 C4 C 0 1 Y N N 15.241 -8.913 22.421 -0.554 -1.528 -0.504 C8 LXD 4 LXD C13 C5 C 0 1 N N S 18.707 -8.158 22.082 -4.071 -1.332 -1.217 C13 LXD 5 LXD C15 C6 C 0 1 N N N 20.478 -6.302 22.089 -6.319 -2.329 -1.645 C15 LXD 6 LXD C17 C7 C 0 1 Y N N 20.435 -8.030 23.885 -5.971 -0.970 0.397 C17 LXD 7 LXD C20 C8 C 0 1 Y N N 20.172 -10.268 24.920 -4.916 0.815 1.799 C20 LXD 8 LXD C22 C9 C 0 1 N N N 18.377 -11.055 23.439 -2.800 0.874 0.536 C22 LXD 9 LXD C26 C10 C 0 1 N N N 11.681 -12.763 19.000 1.541 2.868 -1.101 C26 LXD 10 LXD C1 C11 C 0 1 Y N N 14.002 -9.568 21.940 0.829 -1.018 -0.326 C1 LXD 11 LXD C12 C12 C 0 1 Y N N 17.244 -8.308 22.422 -2.637 -1.649 -0.881 C12 LXD 12 LXD C14 C13 C 0 1 N N N 20.876 -6.641 23.522 -6.863 -2.014 -0.249 C14 LXD 13 LXD C16 C14 C 0 1 N N N 19.018 -6.657 21.832 -4.820 -2.627 -1.541 C16 LXD 14 LXD C18 C15 C 0 1 Y N N 19.474 -8.754 23.256 -4.739 -0.666 -0.025 C18 LXD 15 LXD C19 C16 C 0 1 Y N N 19.319 -10.056 23.842 -4.118 0.370 0.782 C19 LXD 16 LXD C25 C17 C 0 1 N N N 19.011 -8.988 20.819 -4.120 -0.393 -2.424 C25 LXD 17 LXD C27 C18 C 0 1 N N N 12.018 -14.002 18.177 1.963 4.275 -1.538 C27 LXD 18 LXD C29 C19 C 0 1 N N N 13.776 -12.571 17.220 3.845 4.142 0.140 C29 LXD 19 LXD C3 C20 C 0 1 Y N N 11.700 -9.650 21.979 3.033 -1.434 0.250 C3 LXD 20 LXD C30 C21 C 0 1 N N N 14.105 -12.482 18.705 3.349 2.740 0.511 C30 LXD 21 LXD C32 C22 C 0 1 N N N 9.240 -9.668 22.025 5.201 -2.257 -0.177 C32 LXD 22 LXD C33 C23 C 0 1 N N N 8.287 -9.914 23.192 6.271 -3.207 0.364 C33 LXD 23 LXD C35 C24 C 0 1 N N N 9.515 -8.315 24.608 4.540 -4.658 1.237 C35 LXD 24 LXD C36 C25 C 0 1 N N S 10.555 -8.047 23.466 3.470 -3.707 0.695 C36 LXD 25 LXD C37 C26 C 0 1 N N N 7.173 -8.880 25.137 6.762 -5.532 0.833 C37 LXD 26 LXD C38 C27 C 0 1 N N N 10.336 -6.710 22.766 3.083 -4.130 -0.724 C38 LXD 27 LXD C39 C28 C 0 1 N N N 12.565 -14.248 15.789 2.403 6.122 0.014 C39 LXD 28 LXD C40 C29 C 0 1 N N N 13.327 -13.793 14.596 1.210 6.810 -0.502 C40 LXD 29 LXD C42 C30 C 0 1 N N N 12.763 -12.952 13.688 0.952 8.062 -0.133 C42 LXD 30 LXD N10 N1 N 0 1 Y N N 15.310 -8.151 23.482 -0.950 -2.765 -0.354 N10 LXD 31 LXD N2 N2 N 0 1 Y N N 12.844 -9.102 22.437 1.787 -1.844 0.078 N2 LXD 32 LXD N23 N3 N 0 1 N N N 17.653 -11.894 23.164 -1.755 1.274 0.341 N23 LXD 33 LXD N24 N4 N 0 1 N N N 20.300 -11.372 25.677 -4.557 1.795 2.708 N24 LXD 34 LXD N28 N5 N 0 1 N N N 12.779 -13.625 16.976 2.724 4.895 -0.443 N28 LXD 35 LXD N31 N6 N 0 1 N N N 10.535 -9.176 22.516 4.003 -2.337 0.670 N31 LXD 36 LXD N34 N7 N 0 1 N N N 8.175 -8.694 24.048 5.738 -4.577 0.389 N34 LXD 37 LXD N7 N8 N 0 1 N N N 12.911 -12.123 19.480 2.727 2.118 -0.666 N7 LXD 38 LXD N9 N9 N 0 1 Y N N 16.430 -9.041 21.754 -1.641 -0.799 -0.846 N9 LXD 39 LXD O11 O1 O 0 1 Y N N 16.688 -7.731 23.492 -2.141 -2.851 -0.572 O11 LXD 40 LXD O41 O2 O 0 1 N N N 11.714 -15.133 15.681 3.099 6.660 0.854 O41 LXD 41 LXD S21 S1 S 0 1 Y N N 21.185 -8.890 25.182 -6.409 -0.002 1.795 S21 LXD 42 LXD H1 H1 H 0 1 N N N 10.755 -10.993 20.585 4.406 0.216 0.147 H1 LXD 43 LXD H2 H2 H 0 1 N N N 15.033 -10.939 20.630 0.324 0.985 -0.914 H2 LXD 44 LXD H3 H3 H 0 1 N N N 21.114 -6.870 21.394 -6.837 -3.199 -2.049 H3 LXD 45 LXD H4 H4 H 0 1 N N N 20.622 -5.225 21.921 -6.477 -1.473 -2.300 H4 LXD 46 LXD H5 H5 H 0 1 N N N 11.122 -12.052 18.374 0.833 2.940 -0.276 H5 LXD 47 LXD H6 H6 H 0 1 N N N 11.064 -13.056 19.862 1.072 2.352 -1.939 H6 LXD 48 LXD H7 H7 H 0 1 N N N 21.970 -6.574 23.618 -7.878 -1.626 -0.331 H7 LXD 49 LXD H8 H8 H 0 1 N N N 20.403 -5.922 24.207 -6.863 -2.920 0.357 H8 LXD 50 LXD H9 H9 H 0 1 N N N 18.778 -6.419 20.785 -4.462 -3.028 -2.489 H9 LXD 51 LXD H10 H10 H 0 1 N N N 18.387 -6.052 22.500 -4.648 -3.355 -0.748 H10 LXD 52 LXD H11 H11 H 0 1 N N N 18.786 -10.047 21.013 -3.646 -0.875 -3.279 H11 LXD 53 LXD H12 H12 H 0 1 N N N 18.390 -8.628 19.985 -5.159 -0.165 -2.665 H12 LXD 54 LXD H13 H13 H 0 1 N N N 20.074 -8.881 20.557 -3.592 0.530 -2.188 H13 LXD 55 LXD H14 H14 H 0 1 N N N 11.086 -14.501 17.874 2.589 4.210 -2.428 H14 LXD 56 LXD H15 H15 H 0 1 N N N 12.621 -14.690 18.788 1.078 4.871 -1.756 H15 LXD 57 LXD H16 H16 H 0 1 N N N 14.693 -12.803 16.659 4.203 4.652 1.035 H16 LXD 58 LXD H17 H17 H 0 1 N N N 13.373 -11.606 16.880 4.654 4.064 -0.586 H17 LXD 59 LXD H18 H18 H 0 1 N N N 14.481 -13.456 19.051 4.191 2.132 0.842 H18 LXD 60 LXD H19 H19 H 0 1 N N N 14.879 -11.715 18.858 2.615 2.814 1.314 H19 LXD 61 LXD H20 H20 H 0 1 N N N 8.800 -8.919 21.350 5.583 -1.236 -0.170 H20 LXD 62 LXD H21 H21 H 0 1 N N N 9.394 -10.610 21.478 4.944 -2.541 -1.198 H21 LXD 63 LXD H22 H22 H 0 1 N N N 7.293 -10.171 22.798 7.150 -3.170 -0.279 H22 LXD 64 LXD H23 H23 H 0 1 N N N 8.668 -10.748 23.800 6.547 -2.906 1.375 H23 LXD 65 LXD H24 H24 H 0 1 N N N 9.883 -9.135 25.242 4.797 -4.373 2.257 H24 LXD 66 LXD H25 H25 H 0 1 N N N 9.405 -7.403 25.214 4.157 -5.678 1.229 H25 LXD 67 LXD H26 H26 H 0 1 N N N 11.549 -8.015 23.937 2.591 -3.744 1.338 H26 LXD 68 LXD H27 H27 H 0 1 N N N 7.117 -7.965 25.745 7.044 -5.310 1.863 H27 LXD 69 LXD H28 H28 H 0 1 N N N 6.187 -9.088 24.696 6.364 -6.545 0.775 H28 LXD 70 LXD H29 H29 H 0 1 N N N 7.476 -9.725 25.773 7.639 -5.449 0.191 H29 LXD 71 LXD H30 H30 H 0 1 N N N 10.358 -5.899 23.509 2.766 -5.173 -0.718 H30 LXD 72 LXD H31 H31 H 0 1 N N N 11.132 -6.550 22.024 2.264 -3.504 -1.079 H31 LXD 73 LXD H32 H32 H 0 1 N N N 9.359 -6.717 22.260 3.941 -4.014 -1.385 H32 LXD 74 LXD H33 H33 H 0 1 N N N 14.341 -14.135 14.449 0.544 6.300 -1.182 H33 LXD 75 LXD H34 H34 H 0 1 N N N 13.329 -12.630 12.826 1.618 8.572 0.546 H34 LXD 76 LXD H35 H35 H 0 1 N N N 11.750 -12.606 13.829 0.076 8.567 -0.512 H35 LXD 77 LXD H36 H36 H 0 1 N N N 21.028 -11.234 26.348 -5.177 2.060 3.405 H36 LXD 78 LXD H37 H37 H 0 1 N N N 19.439 -11.552 26.152 -3.686 2.218 2.647 H37 LXD 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LXD C42 C40 DOUB N N 1 LXD C40 C39 SING N N 2 LXD O41 C39 DOUB N N 3 LXD C39 N28 SING N N 4 LXD N28 C29 SING N N 5 LXD N28 C27 SING N N 6 LXD C29 C30 SING N N 7 LXD C27 C26 SING N N 8 LXD C30 N7 SING N N 9 LXD C26 N7 SING N N 10 LXD N7 C5 SING N N 11 LXD C5 C4 DOUB Y N 12 LXD C5 C6 SING Y N 13 LXD C25 C13 SING N N 14 LXD C4 C3 SING Y N 15 LXD C6 C1 DOUB Y N 16 LXD N9 C8 SING Y N 17 LXD N9 C12 DOUB Y N 18 LXD C16 C13 SING N N 19 LXD C16 C15 SING N N 20 LXD C1 C8 SING N N 21 LXD C1 N2 SING Y N 22 LXD C3 N2 DOUB Y N 23 LXD C3 N31 SING N N 24 LXD C32 N31 SING N N 25 LXD C32 C33 SING N N 26 LXD C13 C12 SING N N 27 LXD C13 C18 SING N N 28 LXD C15 C14 SING N N 29 LXD C8 N10 DOUB Y N 30 LXD C12 O11 SING Y N 31 LXD N31 C36 SING N N 32 LXD C38 C36 SING N N 33 LXD N23 C22 TRIP N N 34 LXD C33 N34 SING N N 35 LXD C18 C19 SING Y N 36 LXD C18 C17 DOUB Y N 37 LXD C22 C19 SING N N 38 LXD C36 C35 SING N N 39 LXD N10 O11 SING Y N 40 LXD C14 C17 SING N N 41 LXD C19 C20 DOUB Y N 42 LXD C17 S21 SING Y N 43 LXD N34 C35 SING N N 44 LXD N34 C37 SING N N 45 LXD C20 S21 SING Y N 46 LXD C20 N24 SING N N 47 LXD C4 H1 SING N N 48 LXD C6 H2 SING N N 49 LXD C15 H3 SING N N 50 LXD C15 H4 SING N N 51 LXD C26 H5 SING N N 52 LXD C26 H6 SING N N 53 LXD C14 H7 SING N N 54 LXD C14 H8 SING N N 55 LXD C16 H9 SING N N 56 LXD C16 H10 SING N N 57 LXD C25 H11 SING N N 58 LXD C25 H12 SING N N 59 LXD C25 H13 SING N N 60 LXD C27 H14 SING N N 61 LXD C27 H15 SING N N 62 LXD C29 H16 SING N N 63 LXD C29 H17 SING N N 64 LXD C30 H18 SING N N 65 LXD C30 H19 SING N N 66 LXD C32 H20 SING N N 67 LXD C32 H21 SING N N 68 LXD C33 H22 SING N N 69 LXD C33 H23 SING N N 70 LXD C35 H24 SING N N 71 LXD C35 H25 SING N N 72 LXD C36 H26 SING N N 73 LXD C37 H27 SING N N 74 LXD C37 H28 SING N N 75 LXD C37 H29 SING N N 76 LXD C38 H30 SING N N 77 LXD C38 H31 SING N N 78 LXD C38 H32 SING N N 79 LXD C40 H33 SING N N 80 LXD C42 H34 SING N N 81 LXD C42 H35 SING N N 82 LXD N24 H36 SING N N 83 LXD N24 H37 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LXD InChI InChI 1.06 "InChI=1S/C30H37N9O2S/c1-5-25(40)38-12-10-37(11-13-38)20-15-22(33-24(16-20)39-14-9-36(4)18-19(39)2)28-34-29(41-35-28)30(3)8-6-7-23-26(30)21(17-31)27(32)42-23/h5,15-16,19H,1,6-14,18,32H2,2-4H3/t19-,30-/m0/s1" LXD InChIKey InChI 1.06 CKAMBYUZKWQCKJ-ADSBAMQRSA-N LXD SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CN(C)CCN1c2cc(cc(n2)c3noc(n3)[C@@]4(C)CCCc5sc(N)c(C#N)c45)N6CCN(CC6)C(=O)C=C" LXD SMILES CACTVS 3.385 "C[CH]1CN(C)CCN1c2cc(cc(n2)c3noc(n3)[C]4(C)CCCc5sc(N)c(C#N)c45)N6CCN(CC6)C(=O)C=C" LXD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CN(CCN1c2cc(cc(n2)c3nc(on3)[C@]4(CCCc5c4c(c(s5)N)C#N)C)N6CCN(CC6)C(=O)C=C)C" LXD SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CCN1c2cc(cc(n2)c3nc(on3)C4(CCCc5c4c(c(s5)N)C#N)C)N6CCN(CC6)C(=O)C=C)C" # _pdbx_chem_comp_identifier.comp_id LXD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{S})-2-azanyl-4-[3-[6-[(2~{S})-2,4-dimethylpiperazin-1-yl]-4-(4-prop-2-enoylpiperazin-1-yl)pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LXD "Create component" 2022-07-18 PDBE LXD "Modify descriptor" 2022-08-22 RCSB LXD "Initial release" 2022-11-09 RCSB #