data_LY4 # _chem_comp.id LY4 _chem_comp.name ;(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H][1,4,13]OXADIA ZACYCLOHEXADECINE-18,20-DIONE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H28 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms LY333531 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-12-15 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.547 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LY4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1UU3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LY4 CBD CBD C 0 1 N N N 23.059 81.731 26.868 -1.893 3.042 -1.639 CBD LY4 1 LY4 CBB CBB C 0 1 N N N 23.050 80.408 26.142 -3.002 2.237 -0.998 CBB LY4 2 LY4 NAW NAW N 0 1 Y N N 23.855 79.307 26.698 -2.631 0.848 -0.736 NAW LY4 3 LY4 CAV CAV C 0 1 Y N N 25.176 79.425 27.087 -1.441 0.281 -0.795 CAV LY4 4 LY4 CAX CAX C 0 1 Y N N 23.569 78.022 26.687 -3.591 -0.124 -0.416 CAX LY4 5 LY4 CAY CAY C 0 1 Y N N 22.396 77.345 26.297 -4.939 -0.035 -0.225 CAY LY4 6 LY4 CAZ CAZ C 0 1 Y N N 22.346 75.938 26.414 -5.712 -1.189 -0.004 CAZ LY4 7 LY4 CAP CAP C 0 1 Y N N 23.411 75.190 26.923 -5.138 -2.447 -0.027 CAP LY4 8 LY4 CAO CAO C 0 1 Y N N 24.597 75.867 27.300 -3.774 -2.583 -0.216 CAO LY4 9 LY4 CAN CAN C 0 1 Y N N 24.669 77.295 27.167 -2.951 -1.380 -0.312 CAN LY4 10 LY4 CAM CAM C 0 1 Y N N 25.670 78.216 27.471 -1.557 -1.127 -0.344 CAM LY4 11 LY4 CAH CAH C 0 1 N N N 27.056 78.051 27.841 -0.575 -2.072 0.013 CAH LY4 12 LY4 CAE CAE C 0 1 N N N 27.916 77.044 27.289 -0.922 -3.472 0.572 CAE LY4 13 LY4 OAF OAF O 0 1 N N N 27.600 76.118 26.514 -1.981 -3.841 1.009 OAF LY4 14 LY4 NAD NAD N 0 1 N N N 29.196 77.202 27.729 0.189 -4.219 0.545 NAD LY4 15 LY4 CAC CAC C 0 1 N N N 29.211 78.268 28.503 1.250 -3.466 0.242 CAC LY4 16 LY4 OAB OAB O 0 1 N N N 30.255 78.709 29.007 2.372 -3.911 0.117 OAB LY4 17 LY4 CAG CAG C 0 1 N N N 27.920 78.853 28.656 0.833 -2.044 0.047 CAG LY4 18 LY4 CAL CAL C 0 1 Y N N 27.539 80.040 29.364 1.749 -0.970 -0.033 CAL LY4 19 LY4 CAU CAU C 0 1 Y N N 26.284 80.224 29.857 1.511 0.480 -0.171 CAU LY4 20 LY4 CAK CAK C 0 1 Y N N 28.235 81.245 29.633 3.226 -1.058 0.033 CAK LY4 21 LY4 CAJ CAJ C 0 1 Y N N 29.568 81.698 29.375 4.158 -2.000 0.400 CAJ LY4 22 LY4 CAI CAI C 0 1 Y N N 29.913 82.993 29.778 5.541 -1.745 0.200 CAI LY4 23 LY4 CAQ CAQ C 0 1 Y N N 28.997 83.846 30.415 5.975 -0.542 -0.344 CAQ LY4 24 LY4 CAR CAR C 0 1 Y N N 27.694 83.406 30.656 5.074 0.470 -0.677 CAR LY4 25 LY4 CAS CAS C 0 1 Y N N 27.327 82.104 30.257 3.689 0.279 -0.433 CAS LY4 26 LY4 NAT NAT N 0 1 Y N N 26.165 81.460 30.385 2.633 1.088 -0.518 NAT LY4 27 LY4 CBA CBA C 0 1 N N N 24.874 81.952 30.942 2.779 2.492 -0.897 CBA LY4 28 LY4 CBC CBC C 0 1 N N N 24.091 82.524 29.751 1.540 3.300 -0.512 CBC LY4 29 LY4 OBE OBE O 0 1 N N N 23.396 81.368 29.222 0.381 2.640 -1.011 OBE LY4 30 LY4 CBF CBF C 0 1 N N S 22.386 81.641 28.239 -0.769 3.418 -0.680 CBF LY4 31 LY4 CBG CBG C 0 1 N N N 21.457 80.414 28.401 -1.157 3.199 0.779 CBG LY4 32 LY4 NBH NBH N 0 1 N N N 20.668 80.424 29.678 -0.080 3.686 1.651 NBH LY4 33 LY4 CBI CBI C 0 1 N N N 19.406 79.690 29.482 -0.177 5.152 1.663 CBI LY4 34 LY4 CBJ CBJ C 0 1 N N N 21.358 79.660 30.750 -0.399 3.231 3.011 CBJ LY4 35 LY4 HBD1 1HBD H 0 0 N N N 22.602 82.536 26.246 -2.315 3.962 -2.069 HBD1 LY4 36 LY4 HBD2 2HBD H 0 0 N N N 24.094 82.138 26.952 -1.465 2.466 -2.472 HBD2 LY4 37 LY4 HBB1 1HBB H 0 0 N N N 23.342 80.573 25.079 -3.405 2.706 -0.106 HBB1 LY4 38 LY4 HBB2 2HBB H 0 0 N N N 21.996 80.065 26.022 -3.851 2.208 -1.714 HBB2 LY4 39 LY4 HAV HAV H 0 1 N N N 25.750 80.367 27.086 -0.544 0.748 -1.168 HAV LY4 40 LY4 HAY HAY H 0 1 N N N 21.530 77.905 25.906 -5.419 0.931 -0.245 HAY LY4 41 LY4 HAZ HAZ H 0 1 N N N 21.433 75.410 26.092 -6.769 -1.091 0.187 HAZ LY4 42 LY4 HAP HAP H 0 1 N N N 23.330 74.095 27.029 -5.754 -3.326 0.099 HAP LY4 43 LY4 HAO HAO H 0 1 N N N 25.459 75.301 27.693 -3.345 -3.567 -0.330 HAO LY4 44 LY4 HAD HAD H 0 1 N N N 29.993 76.607 27.502 0.218 -5.170 0.721 HAD LY4 45 LY4 HAU HAU H 0 1 N N N 25.479 79.470 29.829 0.571 0.960 0.043 HAU LY4 46 LY4 HAJ HAJ H 0 1 N N N 30.302 81.045 28.873 3.857 -2.920 0.879 HAJ LY4 47 LY4 HAI HAI H 0 1 N N N 30.938 83.355 29.589 6.263 -2.500 0.472 HAI LY4 48 LY4 HAQ HAQ H 0 1 N N N 29.306 84.859 30.723 7.030 -0.386 -0.509 HAQ LY4 49 LY4 HAR HAR H 0 1 N N N 26.963 84.067 31.151 5.427 1.389 -1.119 HAR LY4 50 LY4 HBA1 1HBA H 0 0 N N N 24.998 82.675 31.782 3.651 2.913 -0.395 HBA1 LY4 51 LY4 HBA2 2HBA H 0 0 N N N 24.312 81.177 31.514 2.924 2.558 -1.978 HBA2 LY4 52 LY4 HBC1 1HBC H 0 0 N N N 24.715 83.070 29.006 1.497 3.395 0.571 HBC1 LY4 53 LY4 HBC2 2HBC H 0 0 N N N 23.431 83.386 30.002 1.614 4.297 -0.957 HBC2 LY4 54 LY4 HBF HBF H 0 1 N N N 21.843 82.585 28.478 -0.527 4.481 -0.820 HBF LY4 55 LY4 HBG1 1HBG H 0 0 N N N 22.035 79.466 28.302 -1.315 2.135 0.957 HBG1 LY4 56 LY4 HBG2 2HBG H 0 0 N N N 20.781 80.312 27.520 -2.075 3.743 0.997 HBG2 LY4 57 LY4 HBI1 1HBI H 0 0 N N N 18.820 79.697 30.431 0.052 5.539 0.670 HBI1 LY4 58 LY4 HBI2 2HBI H 0 0 N N N 19.575 78.657 29.099 -1.188 5.447 1.943 HBI2 LY4 59 LY4 HBI3 3HBI H 0 0 N N N 18.818 80.085 28.621 0.533 5.557 2.384 HBI3 LY4 60 LY4 HBJ1 1HBJ H 0 0 N N N 20.772 79.667 31.698 -1.361 3.643 3.315 HBJ1 LY4 61 LY4 HBJ2 2HBJ H 0 0 N N N 22.398 80.030 30.910 -0.448 2.142 3.027 HBJ2 LY4 62 LY4 HBJ3 3HBJ H 0 0 N N N 21.593 78.620 30.424 0.376 3.570 3.698 HBJ3 LY4 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LY4 CBD CBB SING N N 1 LY4 CBD CBF SING N N 2 LY4 CBD HBD1 SING N N 3 LY4 CBD HBD2 SING N N 4 LY4 CBB NAW SING N N 5 LY4 CBB HBB1 SING N N 6 LY4 CBB HBB2 SING N N 7 LY4 NAW CAV SING Y N 8 LY4 NAW CAX SING Y N 9 LY4 CAV CAM DOUB Y N 10 LY4 CAV HAV SING N N 11 LY4 CAX CAY DOUB Y N 12 LY4 CAX CAN SING Y N 13 LY4 CAY CAZ SING Y N 14 LY4 CAY HAY SING N N 15 LY4 CAZ CAP DOUB Y N 16 LY4 CAZ HAZ SING N N 17 LY4 CAP CAO SING Y N 18 LY4 CAP HAP SING N N 19 LY4 CAO CAN DOUB Y N 20 LY4 CAO HAO SING N N 21 LY4 CAN CAM SING Y N 22 LY4 CAM CAH SING N N 23 LY4 CAH CAE SING N N 24 LY4 CAH CAG DOUB N N 25 LY4 CAE OAF DOUB N N 26 LY4 CAE NAD SING N N 27 LY4 NAD CAC SING N N 28 LY4 NAD HAD SING N N 29 LY4 CAC OAB DOUB N N 30 LY4 CAC CAG SING N N 31 LY4 CAG CAL SING N E 32 LY4 CAL CAU DOUB Y N 33 LY4 CAL CAK SING Y N 34 LY4 CAU NAT SING Y N 35 LY4 CAU HAU SING N N 36 LY4 CAK CAJ DOUB Y N 37 LY4 CAK CAS SING Y N 38 LY4 CAJ CAI SING Y N 39 LY4 CAJ HAJ SING N N 40 LY4 CAI CAQ DOUB Y N 41 LY4 CAI HAI SING N N 42 LY4 CAQ CAR SING Y N 43 LY4 CAQ HAQ SING N N 44 LY4 CAR CAS DOUB Y N 45 LY4 CAR HAR SING N N 46 LY4 CAS NAT SING Y N 47 LY4 NAT CBA SING N N 48 LY4 CBA CBC SING N N 49 LY4 CBA HBA1 SING N N 50 LY4 CBA HBA2 SING N N 51 LY4 CBC OBE SING N N 52 LY4 CBC HBC1 SING N N 53 LY4 CBC HBC2 SING N N 54 LY4 OBE CBF SING N N 55 LY4 CBF CBG SING N N 56 LY4 CBF HBF SING N N 57 LY4 CBG NBH SING N N 58 LY4 CBG HBG1 SING N N 59 LY4 CBG HBG2 SING N N 60 LY4 NBH CBI SING N N 61 LY4 NBH CBJ SING N N 62 LY4 CBI HBI1 SING N N 63 LY4 CBI HBI2 SING N N 64 LY4 CBI HBI3 SING N N 65 LY4 CBJ HBJ1 SING N N 66 LY4 CBJ HBJ2 SING N N 67 LY4 CBJ HBJ3 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LY4 SMILES ACDLabs 10.04 "O=C6NC(=O)C=5c1cn(c2ccccc12)CCOC(CN(C)C)CCn4c3ccccc3c(c4)C=56" LY4 SMILES_CANONICAL CACTVS 3.341 "CN(C)C[C@@H]1CCn2cc(c3ccccc23)C4=C(C(=O)NC4=O)c5cn(CCO1)c6ccccc56" LY4 SMILES CACTVS 3.341 "CN(C)C[CH]1CCn2cc(c3ccccc23)C4=C(C(=O)NC4=O)c5cn(CCO1)c6ccccc56" LY4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)C[C@@H]1CCn2cc(c3c2cccc3)C4=C(c5cn(c6c5cccc6)CCO1)C(=O)NC4=O" LY4 SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)CC1CCn2cc(c3c2cccc3)C4=C(c5cn(c6c5cccc6)CCO1)C(=O)NC4=O" LY4 InChI InChI 1.03 "InChI=1S/C28H28N4O3/c1-30(2)15-18-11-12-31-16-21(19-7-3-5-9-23(19)31)25-26(28(34)29-27(25)33)22-17-32(13-14-35-18)24-10-6-4-8-20(22)24/h3-10,16-18H,11-15H2,1-2H3,(H,29,33,34)/t18-/m0/s1" LY4 InChIKey InChI 1.03 ZCBUQCWBWNUWSU-SFHVURJKSA-N # _pdbx_chem_comp_identifier.comp_id LY4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "(9S)-9-[(dimethylamino)methyl]-6,7,10,11-tetrahydro-9H,18H-5,21:12,17-di(metheno)dibenzo[e,k]pyrrolo[3,4-h][1,4,13]oxadiazacyclohexadecine-18,20(19H)-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LY4 "Create component" 2003-12-15 EBI LY4 "Modify descriptor" 2011-06-04 RCSB LY4 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LY4 _pdbx_chem_comp_synonyms.name LY333531 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##