data_LYA
#
_chem_comp.id LYA
_chem_comp.name "2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H21 N5 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms LY231514
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-08-24
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 427.411
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LYA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1JU6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LYA C1 C1 C 0 1 Y N N 46.416 62.028 53.684 -0.958 0.986 0.861 C1 LYA 1
LYA C2 C2 C 0 1 Y N N 45.835 63.024 52.857 -2.114 1.405 0.227 C2 LYA 2
LYA C3 C3 C 0 1 Y N N 44.935 63.985 53.403 -2.270 1.208 -1.129 C3 LYA 3
LYA C4 C4 C 0 1 Y N N 44.587 63.979 54.793 -1.258 0.584 -1.861 C4 LYA 4
LYA C5 C5 C 0 1 Y N N 45.189 62.961 55.606 -0.095 0.164 -1.215 C5 LYA 5
LYA C6 C6 C 0 1 Y N N 46.088 62.004 55.062 0.050 0.372 0.141 C6 LYA 6
LYA C7 C7 C 0 1 N N N 47.396 60.989 53.087 -0.795 1.204 2.343 C7 LYA 7
LYA C8 C8 C 0 1 N N N 46.744 59.643 52.619 -1.346 -0.004 3.101 C8 LYA 8
LYA C9 C9 C 0 1 Y N N 46.395 58.717 53.786 -1.183 0.214 4.583 C9 LYA 9
LYA C10 C10 C 0 1 Y N N 47.297 58.162 54.691 -2.067 0.796 5.413 C10 LYA 10
LYA N11 N11 N 0 1 Y N N 46.633 57.373 55.635 -1.557 0.809 6.685 N11 LYA 11
LYA C12 C12 C 0 1 Y N N 45.299 57.430 55.322 -0.328 0.233 6.702 C12 LYA 12
LYA C13 C13 C 0 1 Y N N 45.158 58.257 54.177 -0.034 -0.165 5.401 C13 LYA 13
LYA C14 C14 C 0 1 Y N N 43.726 58.494 53.600 1.247 -0.821 5.142 C14 LYA 14
LYA O15 O15 O 0 1 N N N 43.480 59.177 52.628 1.545 -1.187 4.016 O15 LYA 15
LYA N16 N16 N 0 1 Y N N 42.705 57.876 54.257 2.088 -1.013 6.172 N16 LYA 16
LYA C17 C17 C 0 1 Y N N 42.921 57.040 55.435 1.775 -0.622 7.389 C17 LYA 17
LYA N18 N18 N 0 1 Y N N 44.115 56.843 55.910 0.598 -0.014 7.686 N18 LYA 18
LYA N19 N19 N 0 1 N N N 41.846 56.450 56.052 2.672 -0.845 8.399 N19 LYA 19
LYA C20 C20 C 0 1 N N N 43.624 64.985 55.462 -1.418 0.370 -3.315 C20 LYA 20
LYA O21 O21 O 0 1 N N N 43.380 64.913 56.674 -2.433 0.736 -3.876 O21 LYA 21
LYA N22 N22 N 0 1 N N N 43.055 65.957 54.700 -0.439 -0.232 -4.019 N22 LYA 22
LYA C23 C23 C 0 1 N N S 42.127 67.014 55.178 -0.598 -0.444 -5.460 C23 LYA 23
LYA C24 C24 C 0 1 N N N 42.857 68.356 55.488 0.774 -0.416 -6.134 C24 LYA 24
LYA C25 C25 C 0 1 N N N 44.000 68.215 56.542 1.435 0.941 -5.889 C25 LYA 25
LYA C26 C26 C 0 1 N N N 44.833 69.429 56.950 2.788 0.969 -6.553 C26 LYA 26
LYA O27 O27 O 0 1 N N N 45.658 69.299 57.875 3.183 0.001 -7.160 O27 LYA 27
LYA O28 O28 O 0 1 N N N 44.695 70.512 56.345 3.554 2.068 -6.470 O28 LYA 28
LYA C29 C29 C 0 1 N N N 40.945 67.108 54.157 -1.249 -1.782 -5.702 C29 LYA 29
LYA O30 O30 O 0 1 N N N 39.843 67.614 54.469 -1.947 -1.947 -6.674 O30 LYA 30
LYA O31 O31 O 0 1 N N N 41.129 66.643 53.008 -1.053 -2.790 -4.837 O31 LYA 31
LYA HC2 HC2 H 0 1 N N N 46.084 63.051 51.782 -2.896 1.886 0.794 HC2 LYA 32
LYA HC3 HC3 H 0 1 N N N 44.499 64.748 52.736 -3.173 1.535 -1.623 HC3 LYA 33
LYA HC5 HC5 H 0 1 N N N 44.953 62.912 56.682 0.691 -0.318 -1.775 HC5 LYA 34
LYA HC6 HC6 H 0 1 N N N 46.535 61.235 55.715 0.949 0.047 0.642 HC6 LYA 35
LYA HC71 1HC7 H 0 0 N N N 47.974 61.445 52.250 -1.342 2.099 2.641 HC71 LYA 36
LYA HC72 2HC7 H 0 0 N N N 48.221 60.783 53.807 0.261 1.330 2.578 HC72 LYA 37
LYA HC81 1HC8 H 0 0 N N N 45.851 59.832 51.978 -0.799 -0.899 2.804 HC81 LYA 38
LYA HC82 2HC8 H 0 0 N N N 47.391 59.122 51.875 -2.403 -0.129 2.867 HC82 LYA 39
LYA H10 H10 H 0 1 N N N 48.387 58.325 54.663 -3.028 1.192 5.122 H10 LYA 40
LYA H11 H11 H 0 1 N N N 47.045 56.852 56.408 -2.008 1.177 7.461 H11 LYA 41
LYA H18 H18 H 0 1 N N N 44.099 57.106 56.895 0.411 0.250 8.600 H18 LYA 42
LYA H191 1H19 H 0 0 N N N 41.996 55.866 56.874 3.517 -1.281 8.210 H191 LYA 43
LYA H192 2H19 H 0 0 N N N 41.329 55.908 55.358 2.463 -0.562 9.303 H192 LYA 44
LYA H22 H22 H 0 1 N N N 43.338 65.890 53.722 0.369 -0.524 -3.572 H22 LYA 45
LYA H23 H23 H 0 1 N N N 41.695 66.745 56.170 -1.224 0.344 -5.877 H23 LYA 46
LYA H241 1H24 H 0 0 N N N 43.240 68.822 54.550 1.400 -1.205 -5.717 H241 LYA 47
LYA H242 2H24 H 0 0 N N N 42.127 69.139 55.799 0.656 -0.574 -7.206 H242 LYA 48
LYA H251 1H25 H 0 0 N N N 43.570 67.760 57.464 0.809 1.730 -6.306 H251 LYA 49
LYA H252 2H25 H 0 0 N N N 44.695 67.413 56.198 1.553 1.099 -4.817 H252 LYA 50
LYA H28 H28 H 0 1 N N N 45.213 71.266 56.598 4.422 2.086 -6.896 H28 LYA 51
LYA H31 H31 H 0 1 N N N 40.411 66.700 52.388 -1.471 -3.648 -4.992 H31 LYA 52
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LYA C1 C2 DOUB Y N 1
LYA C1 C6 SING Y N 2
LYA C1 C7 SING N N 3
LYA C2 C3 SING Y N 4
LYA C2 HC2 SING N N 5
LYA C3 C4 DOUB Y N 6
LYA C3 HC3 SING N N 7
LYA C4 C5 SING Y N 8
LYA C4 C20 SING N N 9
LYA C5 C6 DOUB Y N 10
LYA C5 HC5 SING N N 11
LYA C6 HC6 SING N N 12
LYA C7 C8 SING N N 13
LYA C7 HC71 SING N N 14
LYA C7 HC72 SING N N 15
LYA C8 C9 SING N N 16
LYA C8 HC81 SING N N 17
LYA C8 HC82 SING N N 18
LYA C9 C10 DOUB Y N 19
LYA C9 C13 SING Y N 20
LYA C10 N11 SING Y N 21
LYA C10 H10 SING N N 22
LYA N11 C12 SING Y N 23
LYA N11 H11 SING N N 24
LYA C12 C13 DOUB Y N 25
LYA C12 N18 SING Y N 26
LYA C13 C14 SING Y N 27
LYA C14 O15 DOUB N N 28
LYA C14 N16 SING Y N 29
LYA N16 C17 DOUB Y N 30
LYA C17 N18 SING Y N 31
LYA C17 N19 SING N N 32
LYA N18 H18 SING N N 33
LYA N19 H191 SING N N 34
LYA N19 H192 SING N N 35
LYA C20 O21 DOUB N N 36
LYA C20 N22 SING N N 37
LYA N22 C23 SING N N 38
LYA N22 H22 SING N N 39
LYA C23 C24 SING N N 40
LYA C23 C29 SING N N 41
LYA C23 H23 SING N N 42
LYA C24 C25 SING N N 43
LYA C24 H241 SING N N 44
LYA C24 H242 SING N N 45
LYA C25 C26 SING N N 46
LYA C25 H251 SING N N 47
LYA C25 H252 SING N N 48
LYA C26 O27 DOUB N N 49
LYA C26 O28 SING N N 50
LYA O28 H28 SING N N 51
LYA C29 O30 DOUB N N 52
LYA C29 O31 SING N N 53
LYA O31 H31 SING N N 54
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LYA SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)c1ccc(cc1)CCc2cnc3NC(=NC(=O)c23)N)CCC(=O)O"
LYA SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)c2c(CCc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)c[nH]c2N1"
LYA SMILES CACTVS 3.341 "NC1=NC(=O)c2c(CCc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)c[nH]c2N1"
LYA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CCc2c[nH]c3c2C(=O)N=C(N3)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O"
LYA SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CCc2c[nH]c3c2C(=O)N=C(N3)N)C(=O)NC(CCC(=O)O)C(=O)O"
LYA InChI InChI 1.03 "InChI=1S/C20H21N5O6/c21-20-24-16-15(18(29)25-20)12(9-22-16)6-3-10-1-4-11(5-2-10)17(28)23-13(19(30)31)7-8-14(26)27/h1-2,4-5,9,13H,3,6-8H2,(H,23,28)(H,26,27)(H,30,31)(H4,21,22,24,25,29)/t13-/m0/s1"
LYA InChIKey InChI 1.03 WBXPDJSOTKVWSJ-ZDUSSCGKSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LYA "SYSTEMATIC NAME" ACDLabs 10.04 "N-({4-[2-(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-5-yl)ethyl]phenyl}carbonyl)-L-glutamic acid"
LYA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[4-[2-(2-amino-4-oxo-1,7-dihydropyrrolo[4,5-e]pyrimidin-5-yl)ethyl]phenyl]carbonylamino]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LYA "Create component" 2001-08-24 RCSB
LYA "Modify descriptor" 2011-06-04 RCSB
LYA "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LYA
_pdbx_chem_comp_synonyms.name LY231514
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##