data_LYE # _chem_comp.id LYE _chem_comp.name "bromophenol blue" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H10 Br4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-09-27 _chem_comp.pdbx_modified_date 2020-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 669.961 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LYE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SYD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LYE C02 C1 C 0 1 Y N N -12.568 -11.165 3.291 -0.919 -5.181 -0.435 C02 LYE 1 LYE C04 C2 C 0 1 Y N N -14.124 -12.620 4.395 -0.928 -3.095 0.740 C04 LYE 2 LYE C07 C3 C 0 1 N N N -16.357 -11.786 5.220 -0.103 -1.019 -0.359 C07 LYE 3 LYE C08 C4 C 0 1 N N N -17.469 -11.715 4.519 -1.163 -0.090 -0.449 C08 LYE 4 LYE C01 C5 C 0 1 Y N N -13.455 -10.111 3.430 -0.383 -4.565 -1.553 C01 LYE 5 LYE C03 C6 C 0 1 Y N N -12.902 -12.420 3.773 -1.190 -4.447 0.707 C03 LYE 6 LYE C05 C7 C 0 1 Y N N -15.011 -11.565 4.534 -0.386 -2.463 -0.386 C05 LYE 7 LYE C06 C8 C 0 1 Y N N -14.676 -10.311 4.052 -0.115 -3.213 -1.536 C06 LYE 8 LYE C09 C9 C 0 1 N N N -18.725 -11.107 5.140 -0.891 1.294 -0.424 C09 LYE 9 LYE C10 C10 C 0 1 N N N -20.015 -11.025 4.327 -1.911 2.187 -0.511 C10 LYE 10 LYE C11 C11 C 0 1 N N N -20.048 -11.550 2.892 -3.239 1.731 -0.626 C11 LYE 11 LYE C13 C12 C 0 1 N N N -18.792 -12.157 2.272 -3.511 0.349 -0.651 C13 LYE 12 LYE C14 C13 C 0 1 N N N -17.502 -12.239 3.086 -2.492 -0.545 -0.570 C14 LYE 13 LYE C17 C14 C 0 1 Y N N -16.424 -11.926 6.739 1.281 -0.545 -0.240 C17 LYE 14 LYE C18 C15 C 0 1 Y N N -17.525 -12.521 7.332 1.685 0.166 0.900 C18 LYE 15 LYE C19 C16 C 0 1 Y N N -17.586 -12.648 8.710 2.979 0.607 1.007 C19 LYE 16 LYE C20 C17 C 0 1 Y N N -16.544 -12.179 9.496 3.891 0.350 -0.014 C20 LYE 17 LYE C21 C18 C 0 1 Y N N -15.443 -11.584 8.903 3.495 -0.356 -1.147 C21 LYE 18 LYE C22 C19 C 0 1 Y N N -15.383 -11.457 7.524 2.205 -0.807 -1.262 C22 LYE 19 LYE O12 O1 O 0 1 N N N -21.048 -11.486 2.261 -4.158 2.537 -0.704 O12 LYE 20 LYE O24 O2 O 0 1 N N N -16.606 -12.308 10.889 5.169 0.789 0.096 O24 LYE 21 LYE O27 O3 O 0 1 N N N -13.886 -15.356 4.231 -0.156 -2.330 3.055 O27 LYE 22 LYE O28 O4 O 0 1 N N N -16.018 -14.578 4.777 -1.735 -0.892 1.757 O28 LYE 23 LYE O29 O5 O 0 1 N N N -14.223 -14.368 6.495 -2.454 -2.831 2.888 O29 LYE 24 LYE S26 S1 S 0 1 N N N -14.562 -14.265 5.027 -1.275 -2.163 2.195 S26 LYE 25 LYE BR3 BR1 BR 0 0 N N N -18.834 -12.824 0.451 -5.294 -0.261 -0.804 BR3 LYE 26 LYE BR4 BR2 BR 0 0 N N N -21.611 -10.253 5.115 -1.548 4.042 -0.477 BR4 LYE 27 LYE BR2 BR3 BR 0 0 N N N -13.985 -10.928 10.003 4.741 -0.700 -2.528 BR2 LYE 28 LYE BR1 BR4 BR 0 0 N N N -19.129 -13.482 9.541 3.526 1.566 2.542 BR1 LYE 29 LYE H021 H1 H 0 0 N N N -11.615 -11.009 2.807 -1.131 -6.240 -0.456 H021 LYE 30 LYE H011 H3 H 0 0 N N N -13.195 -9.133 3.053 -0.174 -5.144 -2.439 H011 LYE 31 LYE H031 H4 H 0 0 N N N -12.210 -13.242 3.664 -1.609 -4.936 1.575 H031 LYE 32 LYE H061 H5 H 0 0 N N N -15.367 -9.488 4.161 0.303 -2.733 -2.409 H061 LYE 33 LYE H091 H6 H 0 0 N N N -18.701 -10.735 6.154 0.127 1.643 -0.335 H091 LYE 34 LYE H141 H8 H 0 0 N N N -16.613 -12.668 2.647 -2.700 -1.605 -0.589 H141 LYE 35 LYE H181 H9 H 0 0 N N N -18.336 -12.886 6.720 0.978 0.366 1.692 H181 LYE 36 LYE H221 H10 H 0 0 N N N -14.525 -10.992 7.061 1.900 -1.357 -2.139 H221 LYE 37 LYE H241 H11 H 0 0 N N N -15.821 -11.940 11.277 5.767 0.158 0.521 H241 LYE 38 LYE H3 H12 H 0 1 N N N -13.643 -15.108 6.636 -2.728 -2.395 3.706 H3 LYE 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYE BR3 C13 SING N N 1 LYE O12 C11 DOUB N N 2 LYE C13 C11 SING N N 3 LYE C13 C14 DOUB N N 4 LYE C11 C10 SING N N 5 LYE C14 C08 SING N N 6 LYE C02 C01 DOUB Y N 7 LYE C02 C03 SING Y N 8 LYE C01 C06 SING Y N 9 LYE C03 C04 DOUB Y N 10 LYE C06 C05 DOUB Y N 11 LYE O27 S26 DOUB N N 12 LYE C10 BR4 SING N N 13 LYE C10 C09 DOUB N N 14 LYE C04 C05 SING Y N 15 LYE C04 S26 SING N N 16 LYE C08 C09 SING N N 17 LYE C08 C07 DOUB N N 18 LYE C05 C07 SING N N 19 LYE O28 S26 DOUB N N 20 LYE S26 O29 SING N N 21 LYE C07 C17 SING N N 22 LYE C17 C18 DOUB Y N 23 LYE C17 C22 SING Y N 24 LYE C18 C19 SING Y N 25 LYE C22 C21 DOUB Y N 26 LYE C19 C20 DOUB Y N 27 LYE C19 BR1 SING N N 28 LYE C21 C20 SING Y N 29 LYE C21 BR2 SING N N 30 LYE C20 O24 SING N N 31 LYE C02 H021 SING N N 32 LYE C01 H011 SING N N 33 LYE C03 H031 SING N N 34 LYE C06 H061 SING N N 35 LYE C09 H091 SING N N 36 LYE C14 H141 SING N N 37 LYE C18 H181 SING N N 38 LYE C22 H221 SING N N 39 LYE O24 H241 SING N N 40 LYE O29 H3 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYE InChI InChI 1.03 "InChI=1S/C19H10Br4O5S/c20-12-5-9(6-13(21)18(12)24)17(10-7-14(22)19(25)15(23)8-10)11-3-1-2-4-16(11)29(26,27)28/h1-8,24H,(H,26,27,28)" LYE InChIKey InChI 1.03 FKNLPHIFYDXHIC-UHFFFAOYSA-N LYE SMILES_CANONICAL CACTVS 3.385 "Oc1c(Br)cc(cc1Br)C(=C2C=C(Br)C(=O)C(=C2)Br)c3ccccc3[S](O)(=O)=O" LYE SMILES CACTVS 3.385 "Oc1c(Br)cc(cc1Br)C(=C2C=C(Br)C(=O)C(=C2)Br)c3ccccc3[S](O)(=O)=O" LYE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=C2C=C(C(=O)C(=C2)Br)Br)c3cc(c(c(c3)Br)O)Br)S(=O)(=O)O" LYE SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=C2C=C(C(=O)C(=C2)Br)Br)c3cc(c(c(c3)Br)O)Br)S(=O)(=O)O" # _pdbx_chem_comp_identifier.comp_id LYE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[3,5-bis(bromanyl)-4-oxidanylidene-cyclohexa-2,5-dien-1-ylidene]-[3,5-bis(bromanyl)-4-oxidanyl-phenyl]methyl]benzenesulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LYE "Create component" 2019-09-27 EBI LYE "Initial release" 2020-09-09 RCSB ##