data_LYH # _chem_comp.id LYH _chem_comp.name "3,4 ENE-LYSINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S,3E)-2,6-DIAMINOHEX-3-ENOIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-14 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 144.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LYH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ZCY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LYH N N N 0 1 N N N Y Y N 61.754 -135.451 37.686 2.159 1.805 0.142 N LYH 1 LYH CA CA C 0 1 N N S Y N N 61.563 -135.408 39.130 1.423 0.573 0.453 CA LYH 2 LYH C C C 0 1 N N N Y N Y 62.715 -135.979 39.923 2.210 -0.618 -0.030 C LYH 3 LYH O O O 0 1 N N N Y N Y 63.711 -136.440 39.362 3.064 -0.476 -0.873 O LYH 4 LYH CB CB C 0 1 N N N N N N 60.375 -136.279 39.597 0.082 0.601 -0.235 CB LYH 5 LYH CG CG C 0 1 N N N N N N 60.484 -137.626 39.644 -1.018 0.639 0.475 CG LYH 6 LYH CD CD C 0 1 N N N N N N 59.451 -138.604 40.134 -2.358 0.668 -0.213 CD LYH 7 LYH CE CE C 0 1 N N N N N N 60.056 -139.468 41.298 -3.221 -0.486 0.303 CE LYH 8 LYH NZ NZ N 0 1 N N N N N N 59.962 -138.779 42.599 -4.528 -0.457 -0.368 NZ LYH 9 LYH OXT OXT O 0 1 N Y N Y N Y 62.534 -135.898 41.256 1.962 -1.837 0.475 OXT LYH 10 LYH HXT HXT H 0 1 N Y N Y N Y 63.295 -136.252 41.701 2.492 -2.570 0.134 HXT LYH 11 LYH H H H 0 1 N N N Y Y N 60.955 -135.058 37.232 3.034 1.839 0.643 H LYH 12 LYH H2 H2 H 0 1 N Y N Y Y N 62.568 -134.925 37.442 2.308 1.897 -0.851 H2 LYH 13 LYH HA HA H 0 1 N N N Y N N 61.425 -134.332 39.311 1.277 0.498 1.531 HA LYH 14 LYH HB HB H 0 1 N N N N N N 59.448 -135.807 39.889 0.029 0.591 -1.314 HB LYH 15 LYH HG HG H 0 1 N N N N N N 61.414 -138.046 39.291 -0.964 0.649 1.554 HG LYH 16 LYH HD1 HD1 H 0 1 N N N N N N 58.573 -138.055 40.504 -2.854 1.615 -0.002 HD1 LYH 17 LYH HD2 HD2 H 0 1 N N N N N N 59.150 -139.264 39.307 -2.217 0.563 -1.288 HD2 LYH 18 LYH HE1 HE1 H 0 1 N N N N N N 59.500 -140.415 41.360 -2.725 -1.433 0.093 HE1 LYH 19 LYH HE2 HE2 H 0 1 N N N N N N 61.116 -139.663 41.078 -3.363 -0.380 1.379 HE2 LYH 20 LYH HZ1 HZ1 H 0 1 N N N N N N 60.356 -139.358 43.313 -4.420 -0.488 -1.370 HZ1 LYH 21 LYH HZ2 HZ2 H 0 1 N N N N N N 60.464 -137.915 42.556 -5.117 -1.210 -0.044 HZ2 LYH 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYH N CA SING N N 1 LYH CA C SING N N 2 LYH CA CB SING N N 3 LYH C O DOUB N N 4 LYH C OXT SING N N 5 LYH CB CG DOUB N N 6 LYH CG CD SING N N 7 LYH CD CE SING N N 8 LYH CE NZ SING N E 9 LYH N H SING N N 10 LYH N H2 SING N N 11 LYH CA HA SING N N 12 LYH CB HB SING N N 13 LYH CG HG SING N N 14 LYH CD HD1 SING N N 15 LYH CD HD2 SING N N 16 LYH CE HE1 SING N N 17 LYH CE HE2 SING N N 18 LYH NZ HZ1 SING N N 19 LYH NZ HZ2 SING N N 20 LYH OXT HXT SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYH SMILES ACDLabs 12.01 "O=C(O)C(/C=C/CCN)N" LYH SMILES_CANONICAL CACTVS 3.370 "NCC/C=C/[C@H](N)C(O)=O" LYH SMILES CACTVS 3.370 "NCCC=C[CH](N)C(O)=O" LYH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C(CN)/C=C/[C@@H](C(=O)O)N" LYH SMILES "OpenEye OEToolkits" 1.7.0 "C(CN)C=CC(C(=O)O)N" LYH InChI InChI 1.03 "InChI=1S/C6H12N2O2/c7-4-2-1-3-5(8)6(9)10/h1,3,5H,2,4,7-8H2,(H,9,10)/b3-1+/t5-/m0/s1" LYH InChIKey InChI 1.03 BLKNAFAMNSXQRW-JRIXXDKMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYH "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3E)-2,6-diaminohex-3-enoic acid" LYH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(E,2S)-2,6-bis(azanyl)hex-3-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LYH "Create component" 2011-03-14 EBI LYH "Modify descriptor" 2011-06-04 RCSB LYH "Initial release" 2012-08-24 RCSB LYH "Modify synonyms" 2021-03-13 RCSB LYH "Modify backbone" 2023-11-03 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id LYH _pdbx_chem_comp_synonyms.name "(2S,3E)-2,6-DIAMINOHEX-3-ENOIC ACID" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #