data_LYP # _chem_comp.id LYP _chem_comp.name N~6~-METHYL-N~6~-PROPYL-L-LYSINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H22 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-03-28 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.294 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LYP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LYP N N N 0 1 N N N Y Y N 64.369 47.361 36.048 3.328 1.685 0.554 N LYP 1 LYP CA CA C 0 1 N N S Y N N 65.638 47.968 35.597 3.240 0.219 0.587 CA LYP 2 LYP CB CB C 0 1 N N N N N N 65.771 49.453 35.976 2.002 -0.235 -0.188 CB LYP 3 LYP CG CG C 0 1 N N N N N N 64.964 50.346 35.052 0.743 0.262 0.526 CG LYP 4 LYP CD CD C 0 1 N N N N N N 65.182 51.829 35.294 -0.495 -0.192 -0.249 CD LYP 5 LYP CE CE C 0 1 N N N N N N 64.596 52.623 34.119 -1.754 0.305 0.465 CE LYP 6 LYP NZ NZ N 0 1 N N N N N N 64.513 54.113 34.280 -2.944 -0.131 -0.279 NZ LYP 7 LYP CM CM C 0 1 N N N N N N 63.935 54.707 33.041 -3.009 0.517 -1.595 CM LYP 8 LYP C C C 0 1 N N N Y N Y 66.896 47.149 35.925 4.474 -0.372 -0.045 C LYP 9 LYP O O O 0 1 N N N Y N Y 67.514 46.608 35.004 5.153 0.297 -0.788 O LYP 10 LYP CCA CCA C 0 1 N N N N N N 66.589 56.739 35.862 -6.628 -0.305 0.610 CCA LYP 11 LYP CCC CCC C 0 1 N N N N N N 65.780 56.198 34.668 -5.352 -0.566 -0.193 CCC LYP 12 LYP CCD CCD C 0 1 N N N N N N 65.870 54.675 34.560 -4.168 0.119 0.492 CCD LYP 13 LYP OXT OXT O 0 1 N Y N Y N Y 67.261 47.038 37.206 4.818 -1.643 0.216 OXT LYP 14 LYP H HN1 H 0 1 N N N Y Y N 64.342 46.400 35.773 3.399 2.022 -0.395 HN1 LYP 15 LYP H2 HN2 H 0 1 N Y N Y Y N 64.305 47.425 37.044 2.544 2.105 1.029 HN2 LYP 16 LYP HA HA H 0 1 N N N Y N N 65.584 47.966 34.498 3.166 -0.117 1.621 HA LYP 17 LYP HBC1 HBC1 H 0 0 N N N N N N 65.412 49.591 37.007 2.034 0.175 -1.197 HBC1 LYP 18 LYP HBC2 HBC2 H 0 0 N N N N N N 66.830 49.742 35.915 1.985 -1.324 -0.239 HBC2 LYP 19 LYP HGC1 HGC1 H 0 0 N N N N N N 65.247 50.118 34.014 0.711 -0.148 1.535 HGC1 LYP 20 LYP HGC2 HGC2 H 0 0 N N N N N N 63.897 50.123 35.198 0.761 1.351 0.577 HGC2 LYP 21 LYP HDC1 HDC1 H 0 0 N N N N N N 64.680 52.127 36.226 -0.464 0.218 -1.258 HDC1 LYP 22 LYP HDC2 HDC2 H 0 0 N N N N N N 66.260 52.034 35.376 -0.513 -1.281 -0.300 HDC2 LYP 23 LYP HEC1 HEC1 H 0 0 N N N N N N 65.219 52.418 33.236 -1.786 -0.105 1.474 HEC1 LYP 24 LYP HEC2 HEC2 H 0 0 N N N N N N 63.576 52.251 33.942 -1.737 1.394 0.516 HEC2 LYP 25 LYP HMC1 HMC1 H 0 0 N N N N N N 63.871 55.799 33.153 -2.121 0.258 -2.173 HMC1 LYP 26 LYP HMC2 HMC2 H 0 0 N N N N N N 64.578 54.463 32.183 -3.898 0.177 -2.125 HMC2 LYP 27 LYP HMC3 HMC3 H 0 0 N N N N N N 62.928 54.297 32.873 -3.055 1.599 -1.466 HMC3 LYP 28 LYP HCD1 HCD1 H 0 0 N N N N N N 66.249 54.262 35.506 -4.051 -0.280 1.500 HCD1 LYP 29 LYP HCD2 HCD2 H 0 0 N N N N N N 66.554 54.405 33.742 -4.351 1.192 0.546 HCD2 LYP 30 LYP HXT HOT H 0 1 N Y N Y N Y 68.039 46.496 37.268 5.617 -1.979 -0.213 HOT LYP 31 LYP HCA1 HCA1 H 0 0 N N N N N N 66.497 57.834 35.902 -6.810 0.768 0.664 HCA1 LYP 32 LYP HCA2 HCA2 H 0 0 N N N N N N 66.201 56.304 36.795 -7.471 -0.794 0.122 HCA2 LYP 33 LYP HCA3 HCA3 H 0 0 N Y N N N N 67.647 56.464 35.742 -6.510 -0.704 1.618 HCA3 LYP 34 LYP HCC1 HCC1 H 0 0 N N N N N N 64.725 56.484 34.795 -5.169 -1.639 -0.247 HCC1 LYP 35 LYP HCC2 HCC2 H 0 0 N N N N N N 66.172 56.644 33.742 -5.469 -0.167 -1.201 HCC2 LYP 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYP N CA SING N N 1 LYP CA CB SING N N 2 LYP CB CG SING N N 3 LYP CG CD SING N N 4 LYP CD CE SING N N 5 LYP CE NZ SING N N 6 LYP NZ CM SING N N 7 LYP CA C SING N N 8 LYP C O DOUB N N 9 LYP CCA CCC SING N N 10 LYP NZ CCD SING N N 11 LYP CCC CCD SING N N 12 LYP C OXT SING N N 13 LYP N H SING N N 14 LYP N H2 SING N N 15 LYP CA HA SING N N 16 LYP CB HBC1 SING N N 17 LYP CB HBC2 SING N N 18 LYP CG HGC1 SING N N 19 LYP CG HGC2 SING N N 20 LYP CD HDC1 SING N N 21 LYP CD HDC2 SING N N 22 LYP CE HEC1 SING N N 23 LYP CE HEC2 SING N N 24 LYP CM HMC1 SING N N 25 LYP CM HMC2 SING N N 26 LYP CM HMC3 SING N N 27 LYP CCD HCD1 SING N N 28 LYP CCD HCD2 SING N N 29 LYP OXT HXT SING N N 30 LYP CCA HCA1 SING N N 31 LYP CCA HCA2 SING N N 32 LYP CCA HCA3 SING N N 33 LYP CCC HCC1 SING N N 34 LYP CCC HCC2 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYP SMILES ACDLabs 12.01 "O=C(O)C(N)CCCCN(CCC)C" LYP InChI InChI 1.03 "InChI=1S/C10H22N2O2/c1-3-7-12(2)8-5-4-6-9(11)10(13)14/h9H,3-8,11H2,1-2H3,(H,13,14)/t9-/m0/s1" LYP InChIKey InChI 1.03 RBCPTYNDCRPSKM-VIFPVBQESA-N LYP SMILES_CANONICAL CACTVS 3.370 "CCCN(C)CCCC[C@H](N)C(O)=O" LYP SMILES CACTVS 3.370 "CCCN(C)CCCC[CH](N)C(O)=O" LYP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCN(C)CCCCC(C(=O)O)N" LYP SMILES "OpenEye OEToolkits" 1.7.6 "CCCN(C)CCCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYP "SYSTEMATIC NAME" ACDLabs 12.01 N~6~-methyl-N~6~-propyl-L-lysine LYP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-azanyl-6-[methyl(propyl)amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LYP "Create component" 2007-03-28 RCSB LYP "Modify descriptor" 2011-06-04 RCSB LYP "Modify parent residue" 2012-10-28 RCSB LYP "Modify backbone" 2023-11-03 PDBE #