data_LYU # _chem_comp.id LYU _chem_comp.name "N~6~-(4-methylpentyl)-L-lysine" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C12 H26 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-23 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.347 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LYU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3R13 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LYU N N N 0 1 N N N 0.522 22.023 54.346 4.704 1.741 0.013 N LYU 1 LYU CA CA C 0 1 N N S 1.566 21.543 55.252 4.601 0.337 0.432 CA LYU 2 LYU CB CB C 0 1 N N N 2.669 22.611 55.313 3.344 -0.286 -0.178 CB LYU 3 LYU CG CG C 0 1 N N N 3.735 22.374 56.418 2.103 0.401 0.398 CG LYU 4 LYU CD CD C 0 1 N N N 4.971 23.259 56.289 0.846 -0.222 -0.212 CD LYU 5 LYU CE CE C 0 1 N N N 5.782 23.286 57.594 -0.394 0.465 0.363 CE LYU 6 LYU NZ NZ N 0 1 N N N 6.930 24.158 57.542 -1.601 -0.134 -0.222 NZ LYU 7 LYU "C1'" "C1'" C 0 1 N N N 7.720 24.558 58.691 -2.814 0.502 0.308 "C1'" LYU 8 LYU "C2'" "C2'" C 0 1 N N N 7.575 23.631 59.906 -4.048 -0.146 -0.323 "C2'" LYU 9 LYU "C3'" "C3'" C 0 1 N N N 8.883 23.021 60.372 -5.312 0.516 0.229 "C3'" LYU 10 LYU "C4'" "C4'" C 0 1 N N N 8.762 22.517 61.808 -6.545 -0.132 -0.403 "C4'" LYU 11 LYU "C5'" "C5'" C 0 1 N N N 9.623 23.315 62.798 -6.632 -1.596 0.034 "C5'" LYU 12 LYU "C6'" "C6'" C 0 1 N N N 9.150 21.050 61.846 -7.802 0.612 0.054 "C6'" LYU 13 LYU C C C 0 1 N N N 0.936 21.334 56.599 5.816 -0.419 -0.040 C LYU 14 LYU O O O 0 1 N N N 0.073 22.110 56.981 6.489 0.021 -0.942 O LYU 15 LYU HN HN H 0 1 N N N -0.209 21.343 54.289 5.491 2.193 0.454 HN LYU 16 LYU H2 HNA H 0 1 N Y N 0.150 22.884 54.693 4.761 1.815 -0.992 H2 LYU 17 LYU HA HA H 0 1 N N N 2.011 20.596 54.912 4.541 0.286 1.519 HA LYU 18 LYU HB HB H 0 1 N N N 3.186 22.617 54.342 3.362 -0.156 -1.260 HB LYU 19 LYU HBA HBA H 0 1 N N N 2.188 23.580 55.511 3.313 -1.349 0.060 HBA LYU 20 LYU HG HG H 0 1 N N N 3.267 22.584 57.391 2.085 0.271 1.480 HG LYU 21 LYU HGA HGA H 0 1 N N N 4.061 21.325 56.356 2.134 1.464 0.160 HGA LYU 22 LYU HD HD H 0 1 N N N 5.608 22.864 55.484 0.864 -0.092 -1.294 HD LYU 23 LYU HDA HDA H 0 1 N N N 4.650 24.284 56.049 0.816 -1.286 0.025 HDA LYU 24 LYU HE HE H 0 1 N N N 5.121 23.638 58.400 -0.412 0.334 1.445 HE LYU 25 LYU HEA HEA H 0 1 N N N 6.137 22.265 57.798 -0.364 1.528 0.126 HEA LYU 26 LYU HNZ HNZ H 0 1 N N N 7.577 23.688 56.942 -1.577 -0.083 -1.230 HNZ LYU 27 LYU "H1'" "H1'" H 0 1 N N N 8.778 24.560 58.391 -2.849 0.372 1.390 "H1'" LYU 28 LYU "H1'A" "H1'A" H 0 0 N N N 7.395 25.565 58.992 -2.801 1.566 0.070 "H1'A" LYU 29 LYU "H2'" "H2'" H 0 1 N N N 7.159 24.221 60.736 -4.013 -0.016 -1.405 "H2'" LYU 30 LYU "H2'A" "H2'A" H 0 0 N N N 6.896 22.811 59.629 -4.062 -1.209 -0.086 "H2'A" LYU 31 LYU "H3'" "H3'" H 0 1 N N N 9.140 22.177 59.715 -5.347 0.387 1.311 "H3'" LYU 32 LYU "H3'A" "H3'A" H 0 0 N N N 9.673 23.785 60.325 -5.298 1.580 -0.009 "H3'A" LYU 33 LYU "H4'" "H4'" H 0 1 N N N 7.717 22.653 62.124 -6.467 -0.080 -1.488 "H4'" LYU 34 LYU "H5'" "H5'" H 0 1 N N N 9.493 22.906 63.811 -7.511 -2.057 -0.417 "H5'" LYU 35 LYU "H5'A" "H5'A" H 0 0 N N N 10.681 23.241 62.506 -5.736 -2.125 -0.292 "H5'A" LYU 36 LYU "H5'B" "H5'B" H 0 0 N N N 9.312 24.370 62.787 -6.710 -1.647 1.120 "H5'B" LYU 37 LYU "H6'" "H6'" H 0 1 N N N 9.067 20.675 62.877 -7.740 1.655 -0.257 "H6'" LYU 38 LYU "H6'A" "H6'A" H 0 0 N N N 8.478 20.476 61.192 -8.681 0.150 -0.396 "H6'A" LYU 39 LYU "H6'B" "H6'B" H 0 0 N N N 10.187 20.936 61.497 -7.880 0.560 1.140 "H6'B" LYU 40 LYU OXT O2 O 0 1 N Y N 1.341 20.239 57.425 6.151 -1.582 0.541 OXT LYU 41 LYU HXT H26 H 0 1 N Y N 0.846 20.254 58.236 6.938 -2.030 0.205 HXT LYU 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYU N CA SING N N 1 LYU N HN SING N N 2 LYU N H2 SING N N 3 LYU CA CB SING N N 4 LYU CA C SING N N 5 LYU CA HA SING N N 6 LYU CB CG SING N N 7 LYU CB HB SING N N 8 LYU CB HBA SING N N 9 LYU CG HG SING N N 10 LYU CG HGA SING N N 11 LYU CD CG SING N N 12 LYU CD CE SING N N 13 LYU CD HD SING N N 14 LYU CD HDA SING N N 15 LYU CE HE SING N N 16 LYU CE HEA SING N N 17 LYU NZ CE SING N N 18 LYU NZ "C1'" SING N N 19 LYU NZ HNZ SING N N 20 LYU "C1'" "C2'" SING N N 21 LYU "C1'" "H1'" SING N N 22 LYU "C1'" "H1'A" SING N N 23 LYU "C2'" "C3'" SING N N 24 LYU "C2'" "H2'" SING N N 25 LYU "C2'" "H2'A" SING N N 26 LYU "C3'" "C4'" SING N N 27 LYU "C3'" "H3'" SING N N 28 LYU "C3'" "H3'A" SING N N 29 LYU "C4'" "C6'" SING N N 30 LYU "C4'" "C5'" SING N N 31 LYU "C4'" "H4'" SING N N 32 LYU "C5'" "H5'" SING N N 33 LYU "C5'" "H5'A" SING N N 34 LYU "C5'" "H5'B" SING N N 35 LYU "C6'" "H6'" SING N N 36 LYU "C6'" "H6'A" SING N N 37 LYU "C6'" "H6'B" SING N N 38 LYU C O DOUB N N 39 LYU C OXT SING N N 40 LYU OXT HXT SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYU SMILES ACDLabs 12.01 "O=C(O)C(N)CCCCNCCCC(C)C" LYU SMILES_CANONICAL CACTVS 3.370 "CC(C)CCCNCCCC[C@H](N)C(O)=O" LYU SMILES CACTVS 3.370 "CC(C)CCCNCCCC[CH](N)C(O)=O" LYU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)CCCNCCCC[C@@H](C(=O)O)N" LYU SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)CCCNCCCCC(C(=O)O)N" LYU InChI InChI 1.03 "InChI=1S/C12H26N2O2/c1-10(2)6-5-9-14-8-4-3-7-11(13)12(15)16/h10-11,14H,3-9,13H2,1-2H3,(H,15,16)/t11-/m0/s1" LYU InChIKey InChI 1.03 VVVHWGMAVAYORR-NSHDSACASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYU "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-(4-methylpentyl)-L-lysine" LYU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-azanyl-6-(4-methylpentylamino)hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LYU "Create component" 2011-03-23 RCSB LYU "Modify descriptor" 2011-06-04 RCSB #