data_LYY # _chem_comp.id LYY _chem_comp.name 1,5-anhydro-D-arabinitol _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H10 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-10-18 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 134.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code LYY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2RI9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal LYY O3 O3 O 0 1 N N N N N N 36.320 26.562 -44.660 1.177 1.867 -0.210 O3 LYY 1 LYY O5 O5 O 0 1 N N N N N N 34.382 26.928 -41.610 -1.255 -1.464 0.184 O5 LYY 2 LYY C1 C1 C 0 1 N N N N N N 34.310 28.014 -42.570 -1.756 -0.433 -0.669 C1 LYY 3 LYY C2 C2 C 0 1 N N R N N N 34.156 27.496 -44.027 -1.025 0.878 -0.368 C2 LYY 4 LYY O2 O2 O 0 1 N N N N N N 34.530 28.533 -44.926 -1.284 1.270 0.982 O2 LYY 5 LYY C3 C3 C 0 1 N N N N N N 34.971 26.228 -44.371 0.480 0.670 -0.560 C3 LYY 6 LYY C4 C4 C 0 1 N N R N N N 34.935 25.219 -43.231 0.946 -0.477 0.343 C4 LYY 7 LYY O4 O4 O 0 1 N N N N N N 33.620 24.696 -43.090 2.334 -0.728 0.119 O4 LYY 8 LYY C5 C5 C 0 1 N N N N N N 35.353 25.911 -41.950 0.138 -1.735 0.014 C5 LYY 9 LYY H3 H3 H 0 1 N N N N N N 36.434 26.637 -45.600 2.138 1.806 -0.308 H3 LYY 10 LYY H11 H11 H 0 1 N N N N N N 33.440 28.641 -42.326 -1.591 -0.710 -1.711 H11 LYY 11 LYY H12 H12 H 0 1 N N N N N N 35.248 28.585 -42.509 -2.824 -0.302 -0.493 H12 LYY 12 LYY H2 H2 H 0 1 N N N N N N 33.099 27.208 -44.126 -1.376 1.656 -1.046 H2 LYY 13 LYY H2A H2A H 0 1 N N N N N N 34.613 29.351 -44.450 -2.220 1.415 1.177 H2A LYY 14 LYY H3A H3A H 0 1 N N N N N N 34.508 25.773 -45.259 0.684 0.421 -1.602 H3A LYY 15 LYY H4 H4 H 0 1 N N N N N N 35.625 24.390 -43.447 0.789 -0.205 1.387 H4 LYY 16 LYY H4A H4A H 0 1 N N N N N N 33.422 24.579 -42.168 2.697 -1.444 0.659 H4A LYY 17 LYY H51 H51 H 0 1 N N N N N N 36.339 26.378 -42.091 0.435 -2.543 0.683 H51 LYY 18 LYY H52 H52 H 0 1 N N N N N N 35.409 25.172 -41.137 0.328 -2.029 -1.018 H52 LYY 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LYY O3 C3 SING N N 1 LYY O5 C1 SING N N 2 LYY O5 C5 SING N N 3 LYY C1 C2 SING N N 4 LYY C2 O2 SING N N 5 LYY C2 C3 SING N N 6 LYY C3 C4 SING N N 7 LYY C4 O4 SING N N 8 LYY C4 C5 SING N N 9 LYY O3 H3 SING N N 10 LYY C1 H11 SING N N 11 LYY C1 H12 SING N N 12 LYY C2 H2 SING N N 13 LYY O2 H2A SING N N 14 LYY C3 H3A SING N N 15 LYY C4 H4 SING N N 16 LYY O4 H4A SING N N 17 LYY C5 H51 SING N N 18 LYY C5 H52 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor LYY SMILES ACDLabs 10.04 "OC1COCC(O)C1O" LYY SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1COC[C@@H](O)[C@@H]1O" LYY SMILES CACTVS 3.341 "O[CH]1COC[CH](O)[CH]1O" LYY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H](C([C@@H](CO1)O)O)O" LYY SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(CO1)O)O)O" LYY InChI InChI 1.03 "InChI=1S/C5H10O4/c6-3-1-9-2-4(7)5(3)8/h3-8H,1-2H2/t3-,4-/m1/s1" LYY InChIKey InChI 1.03 QXAMTEJJAZOINB-QWWZWVQMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier LYY "SYSTEMATIC NAME" ACDLabs 10.04 1,5-anhydro-D-arabinitol LYY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3R,5R)-oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site LYY "Create component" 2007-10-18 RCSB LYY "Modify descriptor" 2011-06-04 RCSB LYY "Initial release" 2024-01-10 RCSB #