data_M09 # _chem_comp.id M09 _chem_comp.name "(3S,5R,7R,8S,9S,10R)-7-(hydroxymethyl)-3-(4-nitrophenyl)-1,6-dioxa-2-azaspiro[4.5]decane-8,9,10-triol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H18 N2 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1R)-3'-(4-nitrophenyl)-spiro[1,5-anhydro-D-glucitol-1,5'-isoxazoline]" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-09-04 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M09 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2QRM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M09 C10 C10 C 0 1 Y N N 36.678 24.502 31.192 -2.926 1.448 -0.555 C10 M09 1 M09 C11 C11 C 0 1 Y N N 37.342 24.956 32.340 -4.285 1.204 -0.625 C11 M09 2 M09 C12 C12 C 0 1 Y N N 36.609 25.456 33.424 -4.814 0.069 -0.040 C12 M09 3 M09 N2 N2 N 1 1 N N N 37.218 25.898 34.535 -6.269 -0.191 -0.115 N2 M09 4 M09 O9 O9 O 0 1 N N N 38.619 26.110 34.557 -7.000 0.594 -0.691 O9 M09 5 M09 O8 O8 O -1 1 N N N 36.458 26.160 35.710 -6.736 -1.191 0.401 O8 M09 6 M09 C13 C13 C 0 1 Y N N 35.216 25.498 33.352 -3.985 -0.822 0.614 C13 M09 7 M09 C14 C14 C 0 1 Y N N 34.557 25.044 32.209 -2.626 -0.578 0.684 C14 M09 8 M09 C9 C9 C 0 1 Y N N 35.278 24.543 31.128 -2.096 0.554 0.094 C9 M09 9 M09 C8 C8 C 0 1 N N S 34.584 24.112 29.989 -0.614 0.820 0.170 C8 M09 10 M09 C7 C7 C 0 1 N N N 35.179 23.432 28.760 0.153 -0.054 -0.857 C7 M09 11 M09 N1 N1 N 0 1 N N N 33.271 24.252 29.782 -0.068 0.373 1.473 N1 M09 12 M09 O7 O7 O 0 1 N N N 32.850 23.743 28.511 1.244 -0.238 1.233 O7 M09 13 M09 C1 C1 C 0 1 N N R 33.942 22.976 27.979 1.533 -0.179 -0.175 C1 M09 14 M09 O5 O5 O 0 1 N N N 33.710 21.573 28.234 2.329 0.961 -0.477 O5 M09 15 M09 C5 C5 C 0 1 N N R 32.516 21.051 27.585 3.621 0.952 0.136 C5 M09 16 M09 C6 C6 C 0 1 N N N 32.373 19.583 28.001 4.381 2.221 -0.257 C6 M09 17 M09 O6 O6 O 0 1 N N N 33.411 18.813 27.389 3.713 3.363 0.284 O6 M09 18 M09 C4 C4 C 0 1 N N S 32.624 21.222 26.050 4.400 -0.277 -0.339 C4 M09 19 M09 O4 O4 O 0 1 N N N 31.413 20.789 25.424 5.675 -0.313 0.306 O4 M09 20 M09 C3 C3 C 0 1 N N S 32.912 22.673 25.656 3.612 -1.542 0.013 C3 M09 21 M09 O3 O3 O 0 1 N N N 33.181 22.721 24.244 4.303 -2.690 -0.483 O3 M09 22 M09 C2 C2 C 0 1 N N R 34.111 23.224 26.456 2.224 -1.460 -0.632 C2 M09 23 M09 O2 O2 O 0 1 N N N 34.303 24.619 26.170 1.445 -2.590 -0.235 O2 M09 24 M09 H10 H10 H 0 1 N N N 37.245 24.120 30.356 -2.512 2.335 -1.013 H10 M09 25 M09 H11 H11 H 0 1 N N N 38.420 24.920 32.389 -4.933 1.901 -1.137 H11 M09 26 M09 H13 H13 H 0 1 N N N 34.646 25.883 34.184 -4.398 -1.709 1.071 H13 M09 27 M09 H14 H14 H 0 1 N N N 33.479 25.081 32.162 -1.978 -1.275 1.195 H14 M09 28 M09 H8 H8 H 0 1 N N N 35.177 24.317 30.892 -0.405 1.878 0.009 H8 M09 29 M09 H71 1H7 H 0 1 N N N 35.819 22.582 29.037 -0.318 -1.030 -0.970 H71 M09 30 M09 H72 2H7 H 0 1 N N N 35.833 24.097 28.177 0.235 0.453 -1.819 H72 M09 31 M09 HN1 HN1 H 0 1 N N N 33.048 25.226 29.820 -0.694 -0.280 1.923 HN1 M09 32 M09 H5 H5 H 0 1 N N N 31.616 21.603 27.895 3.510 0.916 1.219 H5 M09 33 M09 H61 1H6 H 0 1 N N N 31.393 19.203 27.676 5.396 2.173 0.136 H61 M09 34 M09 H62 2H6 H 0 1 N N N 32.451 19.502 29.095 4.415 2.302 -1.344 H62 M09 35 M09 HO6 HO6 H 0 1 N N N 33.186 18.642 26.482 4.141 4.205 0.074 HO6 M09 36 M09 H4 H4 H 0 1 N N N 33.467 20.603 25.707 4.540 -0.224 -1.419 H4 M09 37 M09 HO4 HO4 H 0 1 N N N 30.733 20.693 26.081 6.227 0.461 0.129 HO4 M09 38 M09 H3 H3 H 0 1 N N N 32.039 23.300 25.888 3.507 -1.617 1.096 H3 M09 39 M09 HO3 HO3 H 0 1 N N N 32.361 22.732 23.765 5.193 -2.800 -0.122 HO3 M09 40 M09 H2 H2 H 0 1 N N N 35.013 22.680 26.140 2.327 -1.451 -1.717 H2 M09 41 M09 HO2 HO2 H 0 1 N N N 34.345 25.107 26.984 1.828 -3.441 -0.489 HO2 M09 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M09 O3 C3 SING N N 1 M09 O4 C4 SING N N 2 M09 C3 C4 SING N N 3 M09 C3 C2 SING N N 4 M09 C4 C5 SING N N 5 M09 O2 C2 SING N N 6 M09 C2 C1 SING N N 7 M09 O6 C6 SING N N 8 M09 C5 C6 SING N N 9 M09 C5 O5 SING N N 10 M09 C1 O5 SING N N 11 M09 C1 O7 SING N N 12 M09 C1 C7 SING N N 13 M09 O7 N1 SING N N 14 M09 C7 C8 SING N N 15 M09 N1 C8 SING N N 16 M09 C8 C9 SING N N 17 M09 C9 C10 DOUB Y N 18 M09 C9 C14 SING Y N 19 M09 C10 C11 SING Y N 20 M09 C14 C13 DOUB Y N 21 M09 C11 C12 DOUB Y N 22 M09 C13 C12 SING Y N 23 M09 C12 N2 SING N N 24 M09 N2 O9 DOUB N N 25 M09 N2 O8 SING N N 26 M09 C10 H10 SING N N 27 M09 C11 H11 SING N N 28 M09 C13 H13 SING N N 29 M09 C14 H14 SING N N 30 M09 C8 H8 SING N N 31 M09 C7 H71 SING N N 32 M09 C7 H72 SING N N 33 M09 N1 HN1 SING N N 34 M09 C5 H5 SING N N 35 M09 C6 H61 SING N N 36 M09 C6 H62 SING N N 37 M09 O6 HO6 SING N N 38 M09 C4 H4 SING N N 39 M09 O4 HO4 SING N N 40 M09 C3 H3 SING N N 41 M09 O3 HO3 SING N N 42 M09 C2 H2 SING N N 43 M09 O2 HO2 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M09 SMILES ACDLabs 10.04 "[O-][N+](=O)c1ccc(cc1)C3NOC2(OC(C(O)C(O)C2O)CO)C3" M09 SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@]2(C[C@H](NO2)c3ccc(cc3)[N+]([O-])=O)[C@H](O)[C@@H](O)[C@@H]1O" M09 SMILES CACTVS 3.341 "OC[CH]1O[C]2(C[CH](NO2)c3ccc(cc3)[N+]([O-])=O)[CH](O)[CH](O)[CH]1O" M09 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C2C[C@]3([C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)ON2)[N+](=O)[O-]" M09 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C2CC3(C(C(C(C(O3)CO)O)O)O)ON2)[N+](=O)[O-]" M09 InChI InChI 1.03 "InChI=1S/C14H18N2O8/c17-6-10-11(18)12(19)13(20)14(23-10)5-9(15-24-14)7-1-3-8(4-2-7)16(21)22/h1-4,9-13,15,17-20H,5-6H2/t9-,10+,11+,12-,13+,14+/m0/s1" M09 InChIKey InChI 1.03 FYUHHVCQKVTVLN-GMDXDWKASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M09 "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,5R,7R,8S,9S,10R)-7-(hydroxymethyl)-3-(4-nitrophenyl)-1,6-dioxa-2-azaspiro[4.5]decane-8,9,10-triol" M09 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(5R,6R,7S,8S,9R)-9-(hydroxymethyl)-3-(4-nitrophenyl)-1,10-dioxa-2-azaspiro[4.5]decane-6,7,8-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M09 "Create component" 2007-09-04 EBI M09 "Modify aromatic_flag" 2011-06-04 RCSB M09 "Modify descriptor" 2011-06-04 RCSB M09 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id M09 _pdbx_chem_comp_synonyms.name "(1R)-3'-(4-nitrophenyl)-spiro[1,5-anhydro-D-glucitol-1,5'-isoxazoline]" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##