data_M0L # _chem_comp.id M0L _chem_comp.name "4-[[(4~{S},5~{R})-4,5-bis(4-chlorophenyl)-2-(4-methoxy-2-propan-2-yloxy-phenyl)-4,5-dihydroimidazol-1-yl]carbonyl]-3-methylidene-piperazin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H30 Cl2 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Nutlin-3a analogue; 4-[[(4S,5R)-4,5-bis(4-chlorophenyl)-2-(4-methoxy-2-propan-2-yloxy-phenyl)-4,5-dihydroimidazol-1-yl]carbonyl]-3-methylidene-piperazin-2-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-20 _chem_comp.pdbx_modified_date 2023-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 593.500 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M0L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AEU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M0L O3 O1 O 0 1 N N N 26.891 4.623 15.113 -1.959 -0.861 1.202 O3 M0L 1 M0L N2 N1 N 0 1 N N N 27.895 3.484 13.487 -1.431 -2.700 0.075 N2 M0L 2 M0L O2 O2 O 0 1 N N N 32.134 5.851 9.589 -6.292 2.718 0.333 O2 M0L 3 M0L N3 N2 N 0 1 N N N 31.320 4.203 15.588 -0.566 1.164 -2.073 N3 M0L 4 M0L N1 N3 N 0 1 N N N 29.122 4.472 15.206 -0.826 -0.578 -0.687 N1 M0L 5 M0L C10 C1 C 0 1 Y N N 31.951 4.248 20.402 2.937 2.762 -0.432 C10 M0L 6 M0L C9 C2 C 0 1 Y N N 32.706 5.387 20.297 4.099 2.659 -1.175 C9 M0L 7 M0L C3 C3 C 0 1 Y N N 28.630 6.068 18.556 1.248 -0.870 1.072 C3 M0L 8 M0L C2 C4 C 0 1 Y N N 28.514 7.322 19.119 2.248 -0.885 2.026 C2 M0L 9 M0L C5 C5 C 0 1 Y N N 29.331 7.040 16.507 2.901 -0.830 -0.661 C5 M0L 10 M0L O1 O3 O 0 1 N N N 28.932 6.223 13.125 -1.963 1.144 1.496 O1 M0L 11 M0L C6 C6 C 0 1 Y N N 29.212 8.302 17.059 3.901 -0.833 0.293 C6 M0L 12 M0L C8 C7 C 0 1 Y N N 32.846 6.039 19.099 4.147 1.815 -2.271 C8 M0L 13 M0L C7 C8 C 0 1 Y N N 32.184 5.552 17.988 3.033 1.076 -2.622 C7 M0L 14 M0L C4 C9 C 0 1 Y N N 29.049 5.905 17.248 1.574 -0.842 -0.271 C4 M0L 15 M0L C1 C10 C 0 1 Y N N 28.811 8.423 18.363 3.575 -0.866 1.637 C1 M0L 16 M0L C23 C11 C 0 1 N N N 27.128 7.650 13.257 -2.949 0.492 3.604 C23 M0L 17 M0L C22 C12 C 0 1 Y N N 32.287 4.498 11.500 -4.827 1.953 -1.378 C22 M0L 18 M0L C21 C13 C 0 1 N N R 29.210 4.516 16.671 0.484 -0.827 -1.311 C21 M0L 19 M0L C11 C14 C 0 1 Y N N 31.293 3.772 19.286 1.826 2.018 -0.781 C11 M0L 20 M0L C12 C15 C 0 1 Y N N 31.841 4.141 12.754 -3.611 1.434 -1.759 C12 M0L 21 M0L C16 C16 C 0 1 N N N 29.431 1.875 14.165 0.853 -3.139 0.691 C16 M0L 22 M0L C15 C17 C 0 1 N N N 28.793 2.523 13.213 -0.235 -3.454 -0.015 C15 M0L 23 M0L CL CL1 CL 0 0 N N N 33.423 6.067 21.721 5.498 3.588 -0.733 CL M0L 24 M0L C14 C18 C 0 1 N N N 27.911 4.218 14.624 -1.424 -1.361 0.232 C14 M0L 25 M0L C13 C19 C 0 1 N N N 29.141 8.498 12.129 -0.911 1.934 3.523 C13 M0L 26 M0L CL6 CL2 CL 0 0 N N N 28.703 9.996 19.078 4.831 -0.870 2.836 CL6 M0L 27 M0L C61 C20 C 0 1 Y N N 31.390 4.421 18.066 1.872 1.179 -1.879 C61 M0L 28 M0L C41 C21 C 0 1 N N S 30.633 3.916 16.859 0.658 0.373 -2.263 C41 M0L 29 M0L C51 C22 C 0 1 N N N 30.415 4.486 14.732 -1.334 0.594 -1.202 C51 M0L 30 M0L C31 C23 C 0 1 Y N N 31.650 5.506 10.811 -5.091 2.205 -0.035 C31 M0L 31 M0L C42 C24 C 0 1 Y N N 30.552 6.147 11.352 -4.131 1.933 0.928 C42 M0L 32 M0L C52 C25 C 0 1 Y N N 30.104 5.772 12.597 -2.904 1.411 0.555 C52 M0L 33 M0L C62 C26 C 0 1 Y N N 30.759 4.787 13.334 -2.639 1.152 -0.796 C62 M0L 34 M0L C32 C27 C 0 1 N N N 28.604 7.623 13.185 -2.230 1.595 2.826 C32 M0L 35 M0L C33 C28 C 0 1 N N N 31.186 6.238 8.614 -7.236 2.974 -0.709 C33 M0L 36 M0L C34 C29 C 0 1 N N N 26.801 3.673 12.528 -2.682 -3.474 -0.020 C34 M0L 37 M0L C43 C30 C 0 1 N N N 27.386 3.781 11.160 -2.669 -4.266 -1.327 C43 M0L 38 M0L N5 N4 N 0 1 N N N 28.278 2.687 10.945 -1.417 -4.990 -1.501 N5 M0L 39 M0L C63 C31 C 0 1 N N N 29.061 2.156 11.870 -0.264 -4.613 -0.939 C63 M0L 40 M0L O11 O4 O 0 1 N N N 29.947 1.387 11.554 0.760 -5.221 -1.183 O11 M0L 41 M0L H3 H3 H 0 1 N N N 31.872 3.729 21.346 2.899 3.420 0.424 H3 M0L 42 M0L H4 H4 H 0 1 N N N 28.389 5.197 19.148 0.212 -0.885 1.375 H4 M0L 43 M0L H5 H5 H 0 1 N N N 28.193 7.433 20.144 1.993 -0.911 3.075 H5 M0L 44 M0L H6 H6 H 0 1 N N N 29.649 6.938 15.480 3.155 -0.803 -1.710 H6 M0L 45 M0L H7 H7 H 0 1 N N N 29.432 9.180 16.470 4.938 -0.823 -0.011 H7 M0L 46 M0L H8 H8 H 0 1 N N N 33.465 6.921 19.025 5.054 1.735 -2.851 H8 M0L 47 M0L H9 H9 H 0 1 N N N 32.288 6.063 17.042 3.069 0.421 -3.480 H9 M0L 48 M0L H10 H10 H 0 1 N N N 26.787 6.980 14.060 -3.889 0.250 3.107 H10 M0L 49 M0L H11 H11 H 0 1 N N N 26.790 8.676 13.467 -2.319 -0.397 3.641 H11 M0L 50 M0L H12 H12 H 0 1 N N N 26.708 7.315 12.297 -3.152 0.836 4.618 H12 M0L 51 M0L H13 H13 H 0 1 N N N 33.132 3.990 11.060 -5.577 2.171 -2.123 H13 M0L 52 M0L H14 H14 H 0 1 N N N 28.469 3.838 17.120 0.472 -1.762 -1.871 H14 M0L 53 M0L H15 H15 H 0 1 N N N 30.692 2.878 19.365 0.919 2.095 -0.199 H15 M0L 54 M0L H16 H16 H 0 1 N N N 32.340 3.348 13.292 -3.408 1.243 -2.803 H16 M0L 55 M0L H17 H17 H 0 1 N N N 29.238 2.111 15.201 0.817 -2.334 1.410 H17 M0L 56 M0L H18 H18 H 0 1 N N N 30.147 1.108 13.910 1.770 -3.690 0.543 H18 M0L 57 M0L H19 H19 H 0 1 N N N 28.809 9.532 12.305 -0.398 2.721 2.969 H19 M0L 58 M0L H20 H20 H 0 1 N N N 30.240 8.458 12.144 -1.114 2.279 4.537 H20 M0L 59 M0L H21 H21 H 0 1 N N N 28.775 8.157 11.149 -0.280 1.046 3.560 H21 M0L 60 M0L H22 H22 H 0 1 N N N 30.522 2.826 16.958 0.735 0.033 -3.296 H22 M0L 61 M0L H24 H24 H 0 1 N N N 30.052 6.932 10.804 -4.340 2.131 1.969 H24 M0L 62 M0L H25 H25 H 0 1 N N N 28.979 8.009 14.144 -2.860 2.484 2.789 H25 M0L 63 M0L H26 H26 H 0 1 N N N 31.705 6.490 7.677 -7.463 2.044 -1.230 H26 M0L 64 M0L H27 H27 H 0 1 N N N 30.486 5.409 8.434 -8.151 3.382 -0.279 H27 M0L 65 M0L H28 H28 H 0 1 N N N 30.629 7.116 8.972 -6.814 3.692 -1.413 H28 M0L 66 M0L H29 H29 H 0 1 N N N 26.250 4.594 12.770 -2.753 -4.160 0.824 H29 M0L 67 M0L H30 H30 H 0 1 N N N 26.116 2.813 12.572 -3.534 -2.794 -0.010 H30 M0L 68 M0L H31 H31 H 0 1 N N N 27.937 4.729 11.069 -3.494 -4.978 -1.319 H31 M0L 69 M0L H32 H32 H 0 1 N N N 26.580 3.752 10.412 -2.801 -3.578 -2.162 H32 M0L 70 M0L H33 H33 H 0 1 N N N 28.314 2.293 10.027 -1.420 -5.786 -2.056 H33 M0L 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M0L C33 O2 SING N N 1 M0L O2 C31 SING N N 2 M0L C31 C42 DOUB Y N 3 M0L C31 C22 SING Y N 4 M0L N5 C43 SING N N 5 M0L N5 C63 SING N N 6 M0L C43 C34 SING N N 7 M0L C42 C52 SING Y N 8 M0L C22 C12 DOUB Y N 9 M0L O11 C63 DOUB N N 10 M0L C63 C15 SING N N 11 M0L C13 C32 SING N N 12 M0L C34 N2 SING N N 13 M0L C52 O1 SING N N 14 M0L C52 C62 DOUB Y N 15 M0L C12 C62 SING Y N 16 M0L O1 C32 SING N N 17 M0L C32 C23 SING N N 18 M0L C15 N2 SING N N 19 M0L C15 C16 DOUB N N 20 M0L C62 C51 SING N N 21 M0L N2 C14 SING N N 22 M0L C14 O3 DOUB N N 23 M0L C14 N1 SING N N 24 M0L C51 N1 SING N N 25 M0L C51 N3 DOUB N N 26 M0L N1 C21 SING N N 27 M0L N3 C41 SING N N 28 M0L C5 C6 DOUB Y N 29 M0L C5 C4 SING Y N 30 M0L C21 C41 SING N N 31 M0L C21 C4 SING N N 32 M0L C41 C61 SING N N 33 M0L C6 C1 SING Y N 34 M0L C4 C3 DOUB Y N 35 M0L C7 C61 DOUB Y N 36 M0L C7 C8 SING Y N 37 M0L C61 C11 SING Y N 38 M0L C1 CL6 SING N N 39 M0L C1 C2 DOUB Y N 40 M0L C3 C2 SING Y N 41 M0L C8 C9 DOUB Y N 42 M0L C11 C10 DOUB Y N 43 M0L C9 C10 SING Y N 44 M0L C9 CL SING N N 45 M0L C10 H3 SING N N 46 M0L C3 H4 SING N N 47 M0L C2 H5 SING N N 48 M0L C5 H6 SING N N 49 M0L C6 H7 SING N N 50 M0L C8 H8 SING N N 51 M0L C7 H9 SING N N 52 M0L C23 H10 SING N N 53 M0L C23 H11 SING N N 54 M0L C23 H12 SING N N 55 M0L C22 H13 SING N N 56 M0L C21 H14 SING N N 57 M0L C11 H15 SING N N 58 M0L C12 H16 SING N N 59 M0L C16 H17 SING N N 60 M0L C16 H18 SING N N 61 M0L C13 H19 SING N N 62 M0L C13 H20 SING N N 63 M0L C13 H21 SING N N 64 M0L C41 H22 SING N N 65 M0L C42 H24 SING N N 66 M0L C32 H25 SING N N 67 M0L C33 H26 SING N N 68 M0L C33 H27 SING N N 69 M0L C33 H28 SING N N 70 M0L C34 H29 SING N N 71 M0L C34 H30 SING N N 72 M0L C43 H31 SING N N 73 M0L C43 H32 SING N N 74 M0L N5 H33 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M0L InChI InChI 1.06 "InChI=1S/C31H30Cl2N4O4/c1-18(2)41-26-17-24(40-4)13-14-25(26)29-35-27(20-5-9-22(32)10-6-20)28(21-7-11-23(33)12-8-21)37(29)31(39)36-16-15-34-30(38)19(36)3/h5-14,17-18,27-28H,3,15-16H2,1-2,4H3,(H,34,38)/t27-,28+/m0/s1" M0L InChIKey InChI 1.06 JLTUTZCZAIJXTD-WUFINQPMSA-N M0L SMILES_CANONICAL CACTVS 3.385 "COc1ccc(c(OC(C)C)c1)C2=N[C@H]([C@H](N2C(=O)N3CCNC(=O)C3=C)c4ccc(Cl)cc4)c5ccc(Cl)cc5" M0L SMILES CACTVS 3.385 "COc1ccc(c(OC(C)C)c1)C2=N[CH]([CH](N2C(=O)N3CCNC(=O)C3=C)c4ccc(Cl)cc4)c5ccc(Cl)cc5" M0L SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)Oc1cc(ccc1C2=N[C@H]([C@H](N2C(=O)N3CCNC(=O)C3=C)c4ccc(cc4)Cl)c5ccc(cc5)Cl)OC" M0L SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)Oc1cc(ccc1C2=NC(C(N2C(=O)N3CCNC(=O)C3=C)c4ccc(cc4)Cl)c5ccc(cc5)Cl)OC" # _pdbx_chem_comp_identifier.comp_id M0L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "4-[[(4~{S},5~{R})-4,5-bis(4-chlorophenyl)-2-(4-methoxy-2-propan-2-yloxy-phenyl)-4,5-dihydroimidazol-1-yl]carbonyl]-3-methylidene-piperazin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M0L "Create component" 2022-09-19 PDBE M0L "Initial release" 2023-01-18 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 M0L "Nutlin-3a analogue" AUTHOR ? 2 M0L "4-[[(4S,5R)-4,5-bis(4-chlorophenyl)-2-(4-methoxy-2-propan-2-yloxy-phenyl)-4,5-dihydroimidazol-1-yl]carbonyl]-3-methylidene-piperazin-2-one" PDB ? #