data_M1G # _chem_comp.id M1G _chem_comp.name "3-(2-DEOXY-BETA-D-RIBOFURANOSYL)-PYRIDO[5,6-A]-PURINE-10-ONE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C13 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-10-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 383.253 _chem_comp.one_letter_code G _chem_comp.three_letter_code M1G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1K29 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M1G P P P 0 1 N N N -3.442 9.275 14.255 -0.733 0.435 -5.652 P M1G 1 M1G OP1 O1P O 0 1 N N N -4.640 10.110 14.016 -1.548 -0.794 -5.536 OP1 M1G 2 M1G OP2 O2P O 0 1 N N N -2.470 9.664 15.302 -1.648 1.635 -6.212 OP2 M1G 3 M1G OP3 O3P O 0 1 N Y N -2.650 9.118 12.867 0.490 0.174 -6.666 OP3 M1G 4 M1G "O5'" O5* O 0 1 N N N -3.923 7.767 14.550 -0.153 0.833 -4.204 "O5'" M1G 5 M1G "C5'" C5* C 0 1 N N N -5.075 7.209 13.909 0.646 -0.265 -3.762 "C5'" M1G 6 M1G "C4'" C4* C 0 1 N N R -6.068 6.728 14.962 1.229 0.049 -2.384 "C4'" M1G 7 M1G "O4'" O4* O 0 1 N N N -5.512 5.617 15.728 0.169 0.241 -1.419 "O4'" M1G 8 M1G "C3'" C3* C 0 1 N N S -6.296 7.848 15.943 2.036 -1.152 -1.845 "C3'" M1G 9 M1G "O3'" O3* O 0 1 N N N -7.577 7.671 16.592 3.433 -0.963 -2.078 "O3'" M1G 10 M1G "C2'" C2* C 0 1 N N N -5.135 7.665 16.878 1.735 -1.162 -0.330 "C2'" M1G 11 M1G "C1'" C1* C 0 1 N N R -4.931 6.133 16.960 0.783 0.037 -0.128 "C1'" M1G 12 M1G N9 N9 N 0 1 Y N N -3.465 5.774 17.079 -0.232 -0.281 0.877 N9 M1G 13 M1G C8 C8 C 0 1 Y N N -2.396 6.644 17.096 -1.451 -0.848 0.642 C8 M1G 14 M1G N7 N7 N 0 1 Y N N -1.228 6.157 17.248 -2.097 -0.989 1.763 N7 M1G 15 M1G C5 C5 C 0 1 Y N N -1.467 4.809 17.354 -1.335 -0.524 2.783 C5 M1G 16 M1G C6 C6 C 0 1 N N N -0.535 3.811 17.529 -1.516 -0.426 4.178 C6 M1G 17 M1G O6 O6 O 0 1 N N N 0.667 4.006 17.629 -2.547 -0.814 4.701 O6 M1G 18 M1G N1 N1 N 0 1 N N N -0.918 2.545 17.620 -0.522 0.106 4.923 N1 M1G 19 M1G C2 C2 C 0 1 N N N -2.231 2.192 17.537 0.633 0.540 4.331 C2 M1G 20 M1G N2 N2 N 0 1 N N N -2.525 0.851 17.624 1.614 1.067 5.079 N2 M1G 21 M1G N3 N3 N 0 1 N N N -3.221 3.182 17.344 0.808 0.450 3.017 N3 M1G 22 M1G C4 C4 C 0 1 Y N N -2.789 4.509 17.261 -0.129 -0.069 2.228 C4 M1G 23 M1G C6A C6A C 0 1 N N N -1.493 -0.084 17.685 1.490 1.178 6.381 C6A M1G 24 M1G C7A C7A C 0 1 N N N -0.191 0.308 17.609 0.320 0.744 7.019 C7A M1G 25 M1G C8A C8A C 0 1 N N N 0.083 1.625 17.689 -0.679 0.209 6.276 C8A M1G 26 M1G HOP2 2HOP H 0 0 N N N -1.700 9.127 15.455 -1.974 1.356 -7.079 HOP2 M1G 27 M1G HOP3 3HOP H 0 0 N N N -1.880 8.581 13.020 0.994 0.998 -6.713 HOP3 M1G 28 M1G "H5'" 1H5* H 0 1 N N N -4.773 6.369 13.284 1.457 -0.432 -4.471 "H5'" M1G 29 M1G "H5''" 2H5* H 0 0 N N N -5.547 7.972 13.288 0.028 -1.161 -3.699 "H5''" M1G 30 M1G "H4'" H4* H 0 1 N N N -7.007 6.432 14.497 1.861 0.936 -2.434 "H4'" M1G 31 M1G "H3'" H3* H 0 1 N N N -6.246 8.817 15.435 1.695 -2.079 -2.308 "H3'" M1G 32 M1G "HO3'" H3T H 0 0 N Y N -7.720 8.377 17.210 3.886 -1.727 -1.695 "HO3'" M1G 33 M1G "H2'" 1H2* H 0 1 N N N -4.242 8.110 16.436 1.244 -2.092 -0.044 "H2'" M1G 34 M1G "H2''" 2H2* H 0 0 N N N -5.334 8.132 17.838 2.653 -1.022 0.241 "H2''" M1G 35 M1G "H1'" H1* H 0 1 N N N -5.480 5.746 17.819 1.346 0.922 0.167 "H1'" M1G 36 M1G H8 H8 H 0 1 N N N -2.514 7.717 16.982 -1.824 -1.135 -0.328 H8 M1G 37 M1G H6A H6A H 0 1 N N N -1.727 -1.147 17.764 2.293 1.606 6.963 H6A M1G 38 M1G H7A H7A H 0 1 N N N 0.612 -0.403 17.865 0.216 0.835 8.090 H7A M1G 39 M1G H8A H8A H 0 1 N N N 1.119 1.961 17.751 -1.589 -0.130 6.748 H8A M1G 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M1G P OP1 DOUB N N 1 M1G P OP2 SING N N 2 M1G P OP3 SING N N 3 M1G P "O5'" SING N N 4 M1G OP2 HOP2 SING N N 5 M1G OP3 HOP3 SING N N 6 M1G "O5'" "C5'" SING N N 7 M1G "C5'" "C4'" SING N N 8 M1G "C5'" "H5'" SING N N 9 M1G "C5'" "H5''" SING N N 10 M1G "C4'" "O4'" SING N N 11 M1G "C4'" "C3'" SING N N 12 M1G "C4'" "H4'" SING N N 13 M1G "O4'" "C1'" SING N N 14 M1G "C3'" "O3'" SING N N 15 M1G "C3'" "C2'" SING N N 16 M1G "C3'" "H3'" SING N N 17 M1G "O3'" "HO3'" SING N N 18 M1G "C2'" "C1'" SING N N 19 M1G "C2'" "H2'" SING N N 20 M1G "C2'" "H2''" SING N N 21 M1G "C1'" N9 SING N N 22 M1G "C1'" "H1'" SING N N 23 M1G N9 C8 SING Y N 24 M1G N9 C4 SING Y N 25 M1G C8 N7 DOUB Y N 26 M1G C8 H8 SING N N 27 M1G N7 C5 SING Y N 28 M1G C5 C6 SING N N 29 M1G C5 C4 DOUB Y N 30 M1G C6 O6 DOUB N N 31 M1G C6 N1 SING N N 32 M1G N1 C2 SING N N 33 M1G N1 C8A SING N N 34 M1G C2 N2 SING N N 35 M1G C2 N3 DOUB N N 36 M1G N2 C6A DOUB N N 37 M1G N3 C4 SING N N 38 M1G C6A C7A SING N N 39 M1G C6A H6A SING N N 40 M1G C7A C8A DOUB N N 41 M1G C7A H7A SING N N 42 M1G C8A H8A SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M1G SMILES ACDLabs 10.04 "O=C2c3ncn(c3N=C1N=CC=CN12)C4OC(C(O)C4)COP(=O)(O)O" M1G SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)N4C=CC=NC4=Nc23" M1G SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)N4C=CC=NC4=Nc23" M1G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C4N=CC=CN4C2=O" M1G SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=C4N=CC=CN4C2=O" M1G InChI InChI 1.03 "InChI=1S/C13H14N5O7P/c19-7-4-9(25-8(7)5-24-26(21,22)23)18-6-15-10-11(18)16-13-14-2-1-3-17(13)12(10)20/h1-3,6-9,19H,4-5H2,(H2,21,22,23)/t7-,8+,9+/m0/s1" M1G InChIKey InChI 1.03 VHESJINRMVWRRK-DJLDLDEBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M1G "SYSTEMATIC NAME" ACDLabs 10.04 "3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)pyrimido[1,2-a]purin-10(3H)-one" M1G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(10-oxopyrimido[1,2-a]purin-3-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M1G "Create component" 2001-10-09 RCSB M1G "Modify descriptor" 2011-06-04 RCSB #