data_M2G # _chem_comp.id M2G _chem_comp.name "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H18 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 391.274 _chem_comp.one_letter_code G _chem_comp.three_letter_code M2G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EVV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M2G P P P 0 1 N N N 39.678 -6.498 13.465 -0.700 0.510 -5.478 P M2G 1 M2G OP1 O1P O 0 1 N N N 40.714 -5.793 12.682 -1.553 -0.697 -5.419 OP1 M2G 2 M2G OP2 O2P O 0 1 N N N 39.023 -7.698 12.895 -1.554 1.742 -6.066 OP2 M2G 3 M2G OP3 O3P O 0 1 N Y N 40.301 -6.966 14.878 0.563 0.228 -6.436 OP3 M2G 4 M2G "O5'" O5* O 0 1 N N N 38.537 -5.455 13.832 -0.181 0.874 -3.999 "O5'" M2G 5 M2G "C5'" C5* C 0 1 N N N 37.229 -5.901 14.158 0.565 -0.251 -3.534 "C5'" M2G 6 M2G "C4'" C4* C 0 1 N N R 36.323 -4.721 14.403 1.089 0.030 -2.124 "C4'" M2G 7 M2G "O4'" O4* O 0 1 N N N 36.920 -3.829 15.392 -0.009 0.239 -1.211 "O4'" M2G 8 M2G "C3'" C3* C 0 1 N N S 36.122 -3.816 13.206 1.835 -1.202 -1.569 "C3'" M2G 9 M2G "O3'" O3* O 0 1 N N N 35.133 -4.351 12.344 3.246 -1.052 -1.736 "O3'" M2G 10 M2G "C2'" C2* C 0 1 N N R 35.640 -2.540 13.876 1.465 -1.220 -0.067 "C2'" M2G 11 M2G "O2'" O2* O 0 1 N N N 34.317 -2.663 14.349 2.637 -1.084 0.738 "O2'" M2G 12 M2G "C1'" C1* C 0 1 N N R 36.592 -2.481 15.070 0.538 0.002 0.103 "C1'" M2G 13 M2G N9 N9 N 0 1 Y N N 37.831 -1.760 14.787 -0.534 -0.298 1.055 N9 M2G 14 M2G C8 C8 C 0 1 Y N N 39.069 -2.300 14.512 -1.744 -0.855 0.758 C8 M2G 15 M2G N7 N7 N 0 1 Y N N 39.988 -1.400 14.314 -2.450 -0.980 1.843 N7 M2G 16 M2G C5 C5 C 0 1 Y N N 39.316 -0.196 14.478 -1.738 -0.514 2.898 C5 M2G 17 M2G C6 C6 C 0 1 N N N 39.794 1.125 14.397 -1.991 -0.402 4.285 C6 M2G 18 M2G O6 O6 O 0 1 N N N 40.946 1.505 14.158 -3.051 -0.774 4.759 O6 M2G 19 M2G N1 N1 N 0 1 N N N 38.783 2.052 14.623 -1.026 0.121 5.073 N1 M2G 20 M2G C2 C2 C 0 1 N N N 37.468 1.736 14.892 0.152 0.538 4.532 C2 M2G 21 M2G N2 N2 N 0 1 N N N 36.621 2.760 15.040 1.111 1.072 5.356 N2 M2G 22 M2G N3 N3 N 0 1 N N N 37.010 0.499 14.977 0.400 0.439 3.245 N3 M2G 23 M2G C4 C4 C 0 1 Y N N 37.984 -0.410 14.758 -0.505 -0.073 2.404 C4 M2G 24 M2G CM1 CM1 C 0 1 N N N 35.166 2.522 14.983 2.389 1.521 4.798 CM1 M2G 25 M2G CM2 CM2 C 0 1 N N N 37.139 4.114 15.258 0.858 1.192 6.794 CM2 M2G 26 M2G HOP2 2HOP H 0 0 N N N 38.356 -8.151 13.398 -1.845 1.483 -6.951 HOP2 M2G 27 M2G HOP3 3HOP H 0 0 N N N 39.634 -7.419 15.381 1.091 1.037 -6.447 HOP3 M2G 28 M2G "H5'" 1H5* H 0 1 N N N 36.817 -6.588 13.382 1.405 -0.432 -4.205 "H5'" M2G 29 M2G "H5''" 2H5* H 0 0 N N N 37.232 -6.609 15.019 -0.078 -1.130 -3.513 "H5''" M2G 30 M2G "H4'" H4* H 0 1 N N N 35.357 -5.190 14.706 1.747 0.899 -2.132 "H4'" M2G 31 M2G "H3'" H3* H 0 1 N N N 37.025 -3.677 12.567 1.488 -2.112 -2.059 "H3'" M2G 32 M2G "HO3'" *HO3 H 0 0 N Y N 35.006 -3.783 11.592 3.657 -1.848 -1.372 "HO3'" M2G 33 M2G "H2'" H2* H 0 1 N N N 35.637 -1.652 13.200 0.934 -2.138 0.184 "H2'" M2G 34 M2G "HO2'" *HO2 H 0 0 N N N 34.015 -1.865 14.767 3.201 -1.844 0.542 "HO2'" M2G 35 M2G "H1'" H1* H 0 1 N N N 36.086 -1.935 15.900 1.109 0.868 0.438 "H1'" M2G 36 M2G H8 H8 H 0 1 N N N 39.307 -3.375 14.454 -2.067 -1.146 -0.230 H8 M2G 37 M2G HN1 HN1 H 0 1 N N N 39.025 3.042 14.588 -1.177 0.208 6.028 HN1 M2G 38 M2G HM11 1HM1 H 0 0 N N N 34.459 3.375 15.106 3.018 1.912 5.598 HM11 M2G 39 M2G HM12 2HM1 H 0 0 N N N 34.929 2.002 14.025 2.891 0.682 4.318 HM12 M2G 40 M2G HM13 3HM1 H 0 0 N N N 34.906 1.736 15.730 2.208 2.305 4.062 HM13 M2G 41 M2G HM21 1HM2 H 0 0 N N N 36.432 4.967 15.381 1.727 1.634 7.281 HM21 M2G 42 M2G HM22 2HM2 H 0 0 N N N 37.823 4.092 16.138 -0.012 1.827 6.958 HM22 M2G 43 M2G HM23 3HM2 H 0 0 N N N 37.846 4.358 14.431 0.670 0.203 7.214 HM23 M2G 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M2G P OP1 DOUB N N 1 M2G P OP2 SING N N 2 M2G P OP3 SING N N 3 M2G P "O5'" SING N N 4 M2G OP2 HOP2 SING N N 5 M2G OP3 HOP3 SING N N 6 M2G "O5'" "C5'" SING N N 7 M2G "C5'" "C4'" SING N N 8 M2G "C5'" "H5'" SING N N 9 M2G "C5'" "H5''" SING N N 10 M2G "C4'" "O4'" SING N N 11 M2G "C4'" "C3'" SING N N 12 M2G "C4'" "H4'" SING N N 13 M2G "O4'" "C1'" SING N N 14 M2G "C3'" "O3'" SING N N 15 M2G "C3'" "C2'" SING N N 16 M2G "C3'" "H3'" SING N N 17 M2G "O3'" "HO3'" SING N N 18 M2G "C2'" "O2'" SING N N 19 M2G "C2'" "C1'" SING N N 20 M2G "C2'" "H2'" SING N N 21 M2G "O2'" "HO2'" SING N N 22 M2G "C1'" N9 SING N N 23 M2G "C1'" "H1'" SING N N 24 M2G N9 C8 SING Y N 25 M2G N9 C4 SING Y N 26 M2G C8 N7 DOUB Y N 27 M2G C8 H8 SING N N 28 M2G N7 C5 SING Y N 29 M2G C5 C6 SING N N 30 M2G C5 C4 DOUB Y N 31 M2G C6 O6 DOUB N N 32 M2G C6 N1 SING N N 33 M2G N1 C2 SING N N 34 M2G N1 HN1 SING N N 35 M2G C2 N2 SING N N 36 M2G C2 N3 DOUB N N 37 M2G N2 CM1 SING N N 38 M2G N2 CM2 SING N N 39 M2G N3 C4 SING N N 40 M2G CM1 HM11 SING N N 41 M2G CM1 HM12 SING N N 42 M2G CM1 HM13 SING N N 43 M2G CM2 HM21 SING N N 44 M2G CM2 HM22 SING N N 45 M2G CM2 HM23 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M2G SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=C(N(C)C)N1)C3OC(C(O)C3O)COP(=O)(O)O" M2G SMILES_CANONICAL CACTVS 3.341 "CN(C)C1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" M2G SMILES CACTVS 3.341 "CN(C)C1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" M2G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)C1=Nc2c(ncn2[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)C(=O)N1" M2G SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)C1=Nc2c(ncn2C3C(C(C(O3)COP(=O)(O)O)O)O)C(=O)N1" M2G InChI InChI 1.03 "InChI=1S/C12H18N5O8P/c1-16(2)12-14-9-6(10(20)15-12)13-4-17(9)11-8(19)7(18)5(25-11)3-24-26(21,22)23/h4-5,7-8,11,18-19H,3H2,1-2H3,(H,14,15,20)(H2,21,22,23)/t5-,7-,8-,11-/m1/s1" M2G InChIKey InChI 1.03 IWJFVRMOIKWYNZ-IOSLPCCCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M2G "SYSTEMATIC NAME" ACDLabs 10.04 ;N,N-dimethylguanosine 5'-(dihydrogen phosphate) ; M2G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-dimethylamino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M2G "Create component" 1999-07-08 RCSB M2G "Modify descriptor" 2011-06-04 RCSB #