data_M33 # _chem_comp.id M33 _chem_comp.name "5'-O-[(S)-hydroxy{[(S)-hydroxy(methyl)phosphoryl]oxy}phosphoryl]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H17 N5 O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-11-05 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.228 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M33 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3B2T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M33 PB PB P 0 1 N N S 39.616 -21.956 -27.156 5.565 1.531 0.449 PB M33 1 M33 O1B O1B O 0 1 N N N 39.214 -20.756 -27.923 6.800 0.756 0.190 O1B M33 2 M33 O2B O2B O 0 1 N N N 39.116 -23.329 -27.398 5.290 2.530 -0.783 O2B M33 3 M33 C3B C3B C 0 1 N N N 40.300 -21.703 -25.500 5.764 2.496 1.982 C3B M33 4 M33 PA PA P 0 1 N N S 41.257 -22.620 -29.325 3.640 -0.575 -0.355 PA M33 5 M33 O1A O1A O 0 1 N N N 42.659 -22.366 -29.726 4.508 -1.931 -0.325 O1A M33 6 M33 O2A O2A O 0 1 N N N 40.171 -22.006 -30.124 3.590 -0.052 -1.739 O2A M33 7 M33 O3A O3A O 0 1 N N N 41.083 -22.134 -27.798 4.322 0.520 0.608 O3A M33 8 M33 "O5'" "O5'" O 0 1 N N N 41.001 -24.208 -29.216 2.145 -0.883 0.156 "O5'" M33 9 M33 "C5'" "C5'" C 0 1 N N N 42.006 -25.124 -29.659 1.241 -1.737 -0.549 "C5'" M33 10 M33 "C4'" "C4'" C 0 1 N N R 41.742 -26.546 -29.158 -0.086 -1.811 0.208 "C4'" M33 11 M33 "O4'" "O4'" O 0 1 N N N 42.872 -27.373 -29.483 -0.781 -0.547 0.130 "O4'" M33 12 M33 "C3'" "C3'" C 0 1 N N S 41.762 -26.538 -27.630 -1.035 -2.825 -0.468 "C3'" M33 13 M33 "O3'" "O3'" O 0 1 N N N 41.529 -27.861 -27.139 -0.992 -4.081 0.212 "O3'" M33 14 M33 "C2'" "C2'" C 0 1 N N R 43.238 -26.190 -27.453 -2.433 -2.182 -0.330 "C2'" M33 15 M33 "O2'" "O2'" O 0 1 N N N 43.663 -26.529 -26.131 -3.296 -3.021 0.440 "O2'" M33 16 M33 "C1'" "C1'" C 0 1 N N R 43.865 -27.154 -28.464 -2.163 -0.855 0.414 "C1'" M33 17 M33 N9 N9 N 0 1 Y N N 45.090 -26.536 -29.010 -3.037 0.204 -0.099 N9 M33 18 M33 C8 C8 C 0 1 Y N N 45.209 -25.264 -29.394 -2.744 1.074 -1.107 C8 M33 19 M33 N7 N7 N 0 1 Y N N 46.457 -25.027 -29.782 -3.746 1.880 -1.303 N7 M33 20 M33 C5 C5 C 0 1 Y N N 47.145 -26.158 -29.647 -4.743 1.580 -0.437 C5 M33 21 M33 C6 C6 C 0 1 Y N N 48.470 -26.509 -29.873 -6.027 2.096 -0.190 C6 M33 22 M33 N6 N6 N 0 1 N N N 49.346 -25.592 -30.277 -6.517 3.158 -0.929 N6 M33 23 M33 N1 N1 N 0 1 Y N N 48.853 -27.769 -29.622 -6.759 1.540 0.771 N1 M33 24 M33 C2 C2 C 0 1 Y N N 47.994 -28.663 -29.164 -6.299 0.526 1.481 C2 M33 25 M33 N3 N3 N 0 1 Y N N 46.728 -28.362 -28.931 -5.103 0.011 1.285 N3 M33 26 M33 C4 C4 C 0 1 Y N N 46.275 -27.123 -29.162 -4.302 0.497 0.343 C4 M33 27 M33 HO2B HO2B H 0 0 N N N 39.009 -23.468 -28.332 4.495 3.071 -0.681 HO2B M33 28 M33 H3B1 1H3B H 0 0 N N N 41.397 -21.652 -25.560 6.606 3.180 1.874 H3B1 M33 29 M33 H3B2 2H3B H 0 0 N N N 39.911 -20.762 -25.083 4.855 3.066 2.173 H3B2 M33 30 M33 H3B3 3H3B H 0 0 N N N 40.007 -22.541 -24.851 5.950 1.819 2.816 H3B3 M33 31 M33 HO1A HO1A H 0 0 N N N 42.713 -22.312 -30.673 4.583 -2.330 0.553 HO1A M33 32 M33 "H5'1" "1H5'" H 0 0 N N N 42.014 -25.134 -30.759 1.068 -1.336 -1.548 "H5'1" M33 33 M33 "H5'2" "2H5'" H 0 0 N N N 42.974 -24.793 -29.255 1.671 -2.735 -0.628 "H5'2" M33 34 M33 "H4'" "H4'" H 0 1 N N N 40.794 -26.896 -29.593 0.086 -2.088 1.248 "H4'" M33 35 M33 "H3'" "H3'" H 0 1 N N N 41.030 -25.888 -27.129 -0.774 -2.950 -1.519 "H3'" M33 36 M33 "HO3'" "HO3'" H 0 0 N N N 41.477 -28.466 -27.870 -1.569 -4.756 -0.171 "HO3'" M33 37 M33 "H2'" "H2'" H 0 1 N N N 43.490 -25.129 -27.597 -2.864 -1.991 -1.312 "H2'" M33 38 M33 "HO2'" "HO2'" H 0 0 N N N 44.610 -26.604 -26.112 -3.451 -3.891 0.048 "HO2'" M33 39 M33 "H1'" "H1'" H 0 1 N N N 44.155 -28.116 -28.016 -2.311 -0.984 1.486 "H1'" M33 40 M33 H8 H8 H 0 1 N N N 44.411 -24.536 -29.390 -1.817 1.091 -1.660 H8 M33 41 M33 HN61 1HN6 H 0 0 N N N 49.566 -24.982 -29.516 -5.973 3.555 -1.627 HN61 M33 42 M33 HN62 2HN6 H 0 0 N N N 50.180 -26.044 -30.593 -7.405 3.505 -0.749 HN62 M33 43 M33 H2 H2 H 0 1 N N N 48.337 -29.670 -28.974 -6.927 0.104 2.251 H2 M33 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M33 N6 C6 SING N N 1 M33 O2A PA DOUB N N 2 M33 C6 C5 DOUB Y N 3 M33 C6 N1 SING Y N 4 M33 N7 C5 SING Y N 5 M33 N7 C8 DOUB Y N 6 M33 O1A PA SING N N 7 M33 "C5'" "O5'" SING N N 8 M33 "C5'" "C4'" SING N N 9 M33 C5 C4 SING Y N 10 M33 N1 C2 DOUB Y N 11 M33 "O4'" "C4'" SING N N 12 M33 "O4'" "C1'" SING N N 13 M33 C8 N9 SING Y N 14 M33 PA "O5'" SING N N 15 M33 PA O3A SING N N 16 M33 C2 N3 SING Y N 17 M33 C4 N9 SING Y N 18 M33 C4 N3 DOUB Y N 19 M33 "C4'" "C3'" SING N N 20 M33 N9 "C1'" SING N N 21 M33 "C1'" "C2'" SING N N 22 M33 O1B PB DOUB N N 23 M33 O3A PB SING N N 24 M33 "C3'" "C2'" SING N N 25 M33 "C3'" "O3'" SING N N 26 M33 "C2'" "O2'" SING N N 27 M33 O2B PB SING N N 28 M33 PB C3B SING N N 29 M33 O2B HO2B SING N N 30 M33 C3B H3B1 SING N N 31 M33 C3B H3B2 SING N N 32 M33 C3B H3B3 SING N N 33 M33 O1A HO1A SING N N 34 M33 "C5'" "H5'1" SING N N 35 M33 "C5'" "H5'2" SING N N 36 M33 "C4'" "H4'" SING N N 37 M33 "C3'" "H3'" SING N N 38 M33 "O3'" "HO3'" SING N N 39 M33 "C2'" "H2'" SING N N 40 M33 "O2'" "HO2'" SING N N 41 M33 "C1'" "H1'" SING N N 42 M33 C8 H8 SING N N 43 M33 N6 HN61 SING N N 44 M33 N6 HN62 SING N N 45 M33 C2 H2 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M33 SMILES ACDLabs 10.04 "O=P(O)(OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)C" M33 SMILES_CANONICAL CACTVS 3.341 "C[P@@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" M33 SMILES CACTVS 3.341 "C[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" M33 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" M33 SMILES "OpenEye OEToolkits" 1.5.0 "CP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" M33 InChI InChI 1.03 "InChI=1S/C11H17N5O9P2/c1-26(19,20)25-27(21,22)23-2-5-7(17)8(18)11(24-5)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17-18H,2H2,1H3,(H,19,20)(H,21,22)(H2,12,13,14)/t5-,7-,8-,11-/m1/s1" M33 InChIKey InChI 1.03 IPSMXNMCXMRRGZ-IOSLPCCCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M33 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy{[(S)-hydroxy(methyl)phosphoryl]oxy}phosphoryl]adenosine" M33 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-methyl-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M33 "Create component" 2007-11-05 RCSB M33 "Modify aromatic_flag" 2011-06-04 RCSB M33 "Modify descriptor" 2011-06-04 RCSB #