data_M3D # _chem_comp.id M3D _chem_comp.name "7-(3-cyano-4-hydroxyphenyl)-N-[2-(morpholin-4-yl)ethyl]dibenzo[b,f]oxepine-10-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H25 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-20 _chem_comp.pdbx_modified_date 2019-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.516 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M3D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6OB0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M3D C1 C1 C 0 1 N N N 5.135 -0.648 101.824 0.077 3.827 0.086 C1 M3D 1 M3D C2 C2 C 0 1 N N N 3.851 -0.566 102.248 0.459 2.593 0.020 C2 M3D 2 M3D C3 C3 C 0 1 Y N N 6.096 1.532 102.606 -2.290 3.772 -0.473 C3 M3D 3 M3D O1 O1 O 0 1 N N N 5.215 1.567 103.639 -2.111 2.686 -1.269 O1 M3D 4 M3D O2 O2 O 0 1 N N N 2.600 -2.320 103.268 2.697 3.239 0.059 O2 M3D 5 M3D O3 O3 O 0 1 N N N -0.833 7.724 105.623 -5.507 -5.247 -0.347 O3 M3D 6 M3D C11 C4 C 0 1 Y N N 3.235 2.844 103.883 -2.519 0.470 -0.755 C11 M3D 7 M3D C12 C5 C 0 1 Y N N 1.836 3.016 103.790 -2.126 -0.781 -0.084 C12 M3D 8 M3D C13 C6 C 0 1 Y N N 1.102 1.984 103.159 -1.004 -0.842 0.592 C13 M3D 9 M3D C14 C7 C 0 1 Y N N 1.758 0.834 102.643 -0.111 0.327 0.639 C14 M3D 10 M3D C15 C8 C 0 1 N N N 3.135 -1.849 102.267 1.906 2.327 -0.060 C15 M3D 11 M3D C16 C9 C 0 1 Y N N 1.172 4.243 104.288 -3.009 -1.959 -0.149 C16 M3D 12 M3D C17 C10 C 0 1 Y N N -0.240 4.285 104.451 -4.206 -1.886 -0.841 C17 M3D 13 M3D C18 C11 C 0 1 Y N N -0.900 5.443 104.949 -5.042 -2.984 -0.909 C18 M3D 14 M3D C19 C12 C 0 1 Y N N -0.170 6.630 105.158 -4.687 -4.168 -0.282 C19 M3D 15 M3D C20 C13 C 0 1 Y N N 1.237 6.639 104.958 -3.475 -4.246 0.420 C20 M3D 16 M3D C21 C14 C 0 1 Y N N 1.897 5.441 104.574 -2.636 -3.131 0.475 C21 M3D 17 M3D C22 C15 C 0 1 N N N 2.607 -3.823 100.835 3.787 0.790 -0.239 C22 M3D 18 M3D C23 C16 C 0 1 N N N 1.148 -3.733 100.393 4.020 -0.700 -0.500 C23 M3D 19 M3D C24 C17 C 0 1 N N N 1.155 -5.854 99.163 5.740 -2.345 -0.950 C24 M3D 20 M3D C25 C18 C 0 1 N N N 0.715 -7.319 99.331 7.254 -2.576 -0.961 C25 M3D 21 M3D C26 C19 C 0 1 N N N -1.236 -6.595 100.539 7.522 -1.028 0.847 C26 M3D 22 M3D C27 C20 C 0 1 N N N -0.870 -5.134 100.229 6.012 -0.781 0.876 C27 M3D 23 M3D C28 C21 C 0 1 N N N 2.030 7.861 105.182 -3.098 -5.464 1.071 C28 M3D 24 M3D C10 C22 C 0 1 Y N N 3.885 1.693 103.382 -1.730 1.523 -0.699 C10 M3D 25 M3D C4 C23 C 0 1 Y N N 6.103 0.441 101.701 -1.301 4.313 0.198 C4 M3D 26 M3D C5 C24 C 0 1 Y N N 7.039 0.430 100.634 -1.570 5.454 1.100 C5 M3D 27 M3D C6 C25 C 0 1 Y N N 7.953 1.501 100.493 -2.781 5.950 1.205 C6 M3D 28 M3D C7 C26 C 0 1 Y N N 7.947 2.566 101.409 -3.882 5.369 0.419 C7 M3D 29 M3D C8 C27 C 0 1 Y N N 7.033 2.577 102.483 -3.649 4.345 -0.370 C8 M3D 30 M3D C9 C28 C 0 1 Y N N 3.167 0.662 102.747 -0.447 1.438 0.019 C9 M3D 31 M3D N1 N1 N 0 1 N N N 3.165 -2.519 101.102 2.350 1.072 -0.267 N1 M3D 32 M3D N2 N2 N 0 1 N N N 0.583 -5.063 100.262 5.461 -0.983 -0.472 N2 M3D 33 M3D N3 N3 N 0 1 N N N 2.658 8.843 105.320 -2.798 -6.431 1.588 N3 M3D 34 M3D O4 O4 O 0 1 N N N -0.718 -7.359 99.460 7.775 -2.345 0.351 O4 M3D 35 M3D H1 H1 H 0 1 N N N 5.484 -1.631 101.545 0.854 4.576 0.062 H1 M3D 36 M3D H2 H2 H 0 1 N N N -0.224 8.447 105.717 -5.336 -5.826 -1.102 H2 M3D 37 M3D H3 H3 H 0 1 N N N 3.827 3.616 104.352 -3.453 0.524 -1.293 H3 M3D 38 M3D H4 H4 H 0 1 N N N 0.029 2.071 103.068 -0.726 -1.756 1.097 H4 M3D 39 M3D H5 H5 H 0 1 N N N 1.171 0.068 102.158 0.821 0.274 1.184 H5 M3D 40 M3D H6 H6 H 0 1 N N N -0.826 3.416 104.190 -4.488 -0.966 -1.330 H6 M3D 41 M3D H7 H7 H 0 1 N N N -1.957 5.412 105.166 -5.974 -2.919 -1.450 H7 M3D 42 M3D H8 H8 H 0 1 N N N 2.974 5.435 104.496 -1.700 -3.185 1.010 H8 M3D 43 M3D H9 H9 H 0 1 N N N 2.665 -4.430 101.750 4.191 1.054 0.739 H9 M3D 44 M3D H10 H10 H 0 1 N N N 3.192 -4.305 100.038 4.288 1.376 -1.009 H10 M3D 45 M3D H11 H11 H 0 1 N N N 1.093 -3.217 99.423 3.520 -1.286 0.271 H11 M3D 46 M3D H12 H12 H 0 1 N N N 0.575 -3.167 101.142 3.617 -0.965 -1.477 H12 M3D 47 M3D H13 H13 H 0 1 N N N 2.253 -5.791 99.194 5.347 -2.464 -1.959 H13 M3D 48 M3D H14 H14 H 0 1 N N N 0.792 -5.466 98.200 5.266 -3.068 -0.286 H14 M3D 49 M3D H15 H15 H 0 1 N N N 1.024 -7.901 98.450 7.463 -3.603 -1.260 H15 M3D 50 M3D H16 H16 H 0 1 N N N 1.180 -7.744 100.233 7.722 -1.888 -1.665 H16 M3D 51 M3D H17 H17 H 0 1 N N N -2.328 -6.712 100.602 7.998 -0.295 0.195 H17 M3D 52 M3D H18 H18 H 0 1 N N N -0.778 -6.912 101.488 7.926 -0.934 1.855 H18 M3D 53 M3D H19 H19 H 0 1 N N N -1.302 -4.464 100.987 5.542 -1.479 1.569 H19 M3D 54 M3D H20 H20 H 0 1 N N N -1.243 -4.851 99.234 5.816 0.242 1.200 H20 M3D 55 M3D H21 H21 H 0 1 N N N 7.054 -0.392 99.933 -0.764 5.882 1.677 H21 M3D 56 M3D H22 H22 H 0 1 N N N 8.660 1.500 99.676 -2.969 6.783 1.867 H22 M3D 57 M3D H23 H23 H 0 1 N N N 8.646 3.381 101.290 -4.877 5.782 0.491 H23 M3D 58 M3D H24 H24 H 0 1 N N N 7.051 3.380 103.205 -4.456 3.918 -0.947 H24 M3D 59 M3D H25 H25 H 0 1 N N N 3.623 -2.065 100.338 1.718 0.355 -0.434 H25 M3D 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M3D C24 C25 SING N N 1 M3D C24 N2 SING N N 2 M3D C25 O4 SING N N 3 M3D O4 C26 SING N N 4 M3D C27 N2 SING N N 5 M3D C27 C26 SING N N 6 M3D N2 C23 SING N N 7 M3D C23 C22 SING N N 8 M3D C6 C5 DOUB Y N 9 M3D C6 C7 SING Y N 10 M3D C5 C4 SING Y N 11 M3D C22 N1 SING N N 12 M3D N1 C15 SING N N 13 M3D C7 C8 DOUB Y N 14 M3D C4 C1 SING N N 15 M3D C4 C3 DOUB Y N 16 M3D C1 C2 DOUB N N 17 M3D C2 C15 SING N N 18 M3D C2 C9 SING N N 19 M3D C15 O2 DOUB N N 20 M3D C8 C3 SING Y N 21 M3D C3 O1 SING N N 22 M3D C14 C9 DOUB Y N 23 M3D C14 C13 SING Y N 24 M3D C9 C10 SING Y N 25 M3D C13 C12 DOUB Y N 26 M3D C10 O1 SING N N 27 M3D C10 C11 DOUB Y N 28 M3D C12 C11 SING Y N 29 M3D C12 C16 SING N N 30 M3D C16 C17 DOUB Y N 31 M3D C16 C21 SING Y N 32 M3D C17 C18 SING Y N 33 M3D C21 C20 DOUB Y N 34 M3D C18 C19 DOUB Y N 35 M3D C20 C19 SING Y N 36 M3D C20 C28 SING N N 37 M3D C19 O3 SING N N 38 M3D C28 N3 TRIP N N 39 M3D C1 H1 SING N N 40 M3D O3 H2 SING N N 41 M3D C11 H3 SING N N 42 M3D C13 H4 SING N N 43 M3D C14 H5 SING N N 44 M3D C17 H6 SING N N 45 M3D C18 H7 SING N N 46 M3D C21 H8 SING N N 47 M3D C22 H9 SING N N 48 M3D C22 H10 SING N N 49 M3D C23 H11 SING N N 50 M3D C23 H12 SING N N 51 M3D C24 H13 SING N N 52 M3D C24 H14 SING N N 53 M3D C25 H15 SING N N 54 M3D C25 H16 SING N N 55 M3D C26 H17 SING N N 56 M3D C26 H18 SING N N 57 M3D C27 H19 SING N N 58 M3D C27 H20 SING N N 59 M3D C5 H21 SING N N 60 M3D C6 H22 SING N N 61 M3D C7 H23 SING N N 62 M3D C8 H24 SING N N 63 M3D N1 H25 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M3D SMILES ACDLabs 12.01 "C2=C(C(=O)NCCN1CCOCC1)c4ccc(cc4Oc3c2cccc3)c5ccc(O)c(C#N)c5" M3D InChI InChI 1.03 "InChI=1S/C28H25N3O4/c29-18-22-15-19(6-8-25(22)32)20-5-7-23-24(28(33)30-9-10-31-11-13-34-14-12-31)16-21-3-1-2-4-26(21)35-27(23)17-20/h1-8,15-17,32H,9-14H2,(H,30,33)" M3D InChIKey InChI 1.03 WKDYAACRENBHRU-UHFFFAOYSA-N M3D SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(cc1C#N)c2ccc3c(Oc4ccccc4C=C3C(=O)NCCN5CCOCC5)c2" M3D SMILES CACTVS 3.385 "Oc1ccc(cc1C#N)c2ccc3c(Oc4ccccc4C=C3C(=O)NCCN5CCOCC5)c2" M3D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C=C(c3ccc(cc3O2)c4ccc(c(c4)C#N)O)C(=O)NCCN5CCOCC5" M3D SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C=C(c3ccc(cc3O2)c4ccc(c(c4)C#N)O)C(=O)NCCN5CCOCC5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M3D "SYSTEMATIC NAME" ACDLabs 12.01 "7-(3-cyano-4-hydroxyphenyl)-N-[2-(morpholin-4-yl)ethyl]dibenzo[b,f]oxepine-10-carboxamide" M3D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(3-cyano-4-oxidanyl-phenyl)-~{N}-(2-morpholin-4-ylethyl)benzo[b][1]benzoxepine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M3D "Create component" 2019-03-20 RCSB M3D "Initial release" 2019-05-08 RCSB ##