data_M3L # _chem_comp.id M3L _chem_comp.name N-TRIMETHYLLYSINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H21 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 189.275 _chem_comp.one_letter_code K _chem_comp.three_letter_code M3L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1IRV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M3L N N N 0 1 N N N Y Y N -2.814 12.539 13.256 2.673 -1.806 -0.237 N M3L 1 M3L CA CA C 0 1 N N S Y N N -3.102 11.614 14.365 2.588 -0.365 -0.509 CA M3L 2 M3L CB CB C 0 1 N N N N N N -4.189 12.119 15.335 1.322 0.202 0.136 CB M3L 3 M3L CG CG C 0 1 N N N N N N -3.880 13.549 15.831 0.090 -0.410 -0.535 CG M3L 4 M3L CD CD C 0 1 N N N N N N -4.441 13.558 17.321 -1.176 0.157 0.110 CD M3L 5 M3L CE CE C 0 1 N N N N N N -3.694 14.657 18.071 -2.408 -0.455 -0.560 CE M3L 6 M3L NZ NZ N 1 1 N N N N N N -4.572 15.283 19.112 -3.623 0.090 0.059 NZ M3L 7 M3L C C C 0 1 N N N Y N Y -3.379 10.187 13.922 3.798 0.327 0.065 C M3L 8 M3L O O O 0 1 N N N Y N Y -3.248 9.276 14.755 4.447 -0.211 0.930 O M3L 9 M3L OXT OXT O 0 1 N Y N Y N Y -3.767 10.077 12.705 4.153 1.541 -0.384 OXT M3L 10 M3L CM1 CM1 C 0 1 N N N N N N -4.397 14.369 20.286 -3.648 1.549 -0.111 CM1 M3L 11 M3L CM2 CM2 C 0 1 N N N N N N -4.155 16.639 19.590 -3.632 -0.237 1.491 CM2 M3L 12 M3L CM3 CM3 C 0 1 N N N N N N -5.970 15.303 18.583 -4.806 -0.498 -0.585 CM3 M3L 13 M3L H 1HN H 0 1 N N N Y Y N -2.094 12.204 12.614 2.704 -1.910 0.766 H M3L 14 M3L H2 2HN H 0 1 N Y N Y Y N -2.573 13.463 13.613 1.802 -2.211 -0.544 H2 M3L 15 M3L HA HA H 0 1 N N N Y N N -2.146 11.591 14.939 2.553 -0.200 -1.586 HA M3L 16 M3L HB2 1HB H 0 1 N N N N N N -5.204 12.054 14.880 1.304 1.285 0.010 HB2 M3L 17 M3L HB3 2HB H 0 1 N N N N N N -4.337 11.414 16.186 1.315 -0.040 1.198 HB3 M3L 18 M3L HG2 1HG H 0 1 N N N N N N -2.809 13.847 15.739 0.109 -1.492 -0.409 HG2 M3L 19 M3L HG3 2HG H 0 1 N N N N N N -4.284 14.359 15.181 0.097 -0.167 -1.598 HG3 M3L 20 M3L HD2 1HD H 0 1 N N N N N N -5.549 13.668 17.371 -1.194 1.240 -0.016 HD2 M3L 21 M3L HD3 2HD H 0 1 N N N N N N -4.374 12.563 17.820 -1.182 -0.085 1.173 HD3 M3L 22 M3L HE2 1HE H 0 1 N N N N N N -2.739 14.282 18.507 -2.389 -1.537 -0.435 HE2 M3L 23 M3L HE3 2HE H 0 1 N N N N N N -3.272 15.418 17.374 -2.401 -0.212 -1.623 HE3 M3L 24 M3L HXT HXT H 0 1 N Y N Y N Y -3.940 9.184 12.428 4.929 1.985 -0.016 HXT M3L 25 M3L HM11 1HM1 H 0 0 N N N N N N -5.050 14.834 21.060 -2.771 1.985 0.367 HM11 M3L 26 M3L HM12 2HM1 H 0 0 N N N N N N -4.612 13.295 20.077 -3.641 1.791 -1.173 HM12 M3L 27 M3L HM13 3HM1 H 0 0 N N N N N N -3.339 14.210 20.601 -4.550 1.953 0.349 HM13 M3L 28 M3L HM21 1HM2 H 0 0 N N N N N N -4.808 17.104 20.364 -4.534 0.167 1.950 HM21 M3L 29 M3L HM22 2HM2 H 0 0 N N N N N N -3.101 16.605 19.953 -3.614 -1.320 1.616 HM22 M3L 30 M3L HM23 3HM2 H 0 0 N N N N N N -4.045 17.329 18.721 -2.755 0.199 1.968 HM23 M3L 31 M3L HM31 1HM3 H 0 0 N N N N N N -6.623 15.768 19.357 -4.799 -0.255 -1.648 HM31 M3L 32 M3L HM32 2HM3 H 0 0 N N N N N N -6.049 15.806 17.591 -4.788 -1.581 -0.459 HM32 M3L 33 M3L HM33 3HM3 H 0 0 N N N N N N -6.326 14.295 18.266 -5.708 -0.094 -0.126 HM33 M3L 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M3L N CA SING N N 1 M3L N H SING N N 2 M3L N H2 SING N N 3 M3L CA CB SING N N 4 M3L CA C SING N N 5 M3L CA HA SING N N 6 M3L CB CG SING N N 7 M3L CB HB2 SING N N 8 M3L CB HB3 SING N N 9 M3L CG CD SING N N 10 M3L CG HG2 SING N N 11 M3L CG HG3 SING N N 12 M3L CD CE SING N N 13 M3L CD HD2 SING N N 14 M3L CD HD3 SING N N 15 M3L CE NZ SING N N 16 M3L CE HE2 SING N N 17 M3L CE HE3 SING N N 18 M3L NZ CM1 SING N N 19 M3L NZ CM2 SING N N 20 M3L NZ CM3 SING N N 21 M3L C O DOUB N N 22 M3L C OXT SING N N 23 M3L OXT HXT SING N N 24 M3L CM1 HM11 SING N N 25 M3L CM1 HM12 SING N N 26 M3L CM1 HM13 SING N N 27 M3L CM2 HM21 SING N N 28 M3L CM2 HM22 SING N N 29 M3L CM2 HM23 SING N N 30 M3L CM3 HM31 SING N N 31 M3L CM3 HM32 SING N N 32 M3L CM3 HM33 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M3L SMILES ACDLabs 10.04 "O=C(O)C(N)CCCC[N+](C)(C)C" M3L SMILES_CANONICAL CACTVS 3.341 "C[N+](C)(C)CCCC[C@H](N)C(O)=O" M3L SMILES CACTVS 3.341 "C[N+](C)(C)CCCC[CH](N)C(O)=O" M3L SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[N+](C)(C)CCCC[C@@H](C(=O)O)N" M3L SMILES "OpenEye OEToolkits" 1.5.0 "C[N+](C)(C)CCCCC(C(=O)O)N" M3L InChI InChI 1.03 "InChI=1S/C9H20N2O2/c1-11(2,3)7-5-4-6-8(10)9(12)13/h8H,4-7,10H2,1-3H3/p+1/t8-/m0/s1" M3L InChIKey InChI 1.03 MXNRLFUSFKVQSK-QMMMGPOBSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M3L "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(5S)-5-amino-5-carboxypentyl]-N,N-dimethylmethanaminium" M3L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(5S)-5-amino-6-hydroxy-6-oxo-hexyl]-trimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M3L "Create component" 1999-07-08 RCSB M3L "Modify descriptor" 2011-06-04 RCSB M3L "Modify backbone" 2023-11-03 PDBE M3L "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id M3L _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0187 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0193 #