data_M3O # _chem_comp.id M3O _chem_comp.name ;3'-O-(N-formyl-L-methionyl)adenosine 5'-(dihydrogen phosphate) ; _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C16 H23 N6 O9 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-04-06 _chem_comp.pdbx_modified_date 2015-05-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.427 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M3O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Z3Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M3O P P1 P 0 1 N N N 86.583 -43.414 -8.646 0.680 5.015 -0.044 P M3O 1 M3O OP2 O1 O 0 1 N N N 86.093 -42.305 -9.485 0.152 6.132 0.988 OP2 M3O 2 M3O OP3 O2 O 0 1 N Y N 87.459 -43.135 -7.477 2.290 5.021 -0.064 OP3 M3O 3 M3O "C1'" C1 C 0 1 N N R 88.065 -47.658 -8.761 -2.169 -0.067 0.588 "C1'" M3O 4 M3O "C2'" C2 C 0 1 N N R 87.312 -48.662 -7.880 -1.218 -0.970 -0.228 "C2'" M3O 5 M3O "O2'" O3 O 0 1 N N N 87.327 -49.956 -8.450 -0.948 -2.182 0.480 "O2'" M3O 6 M3O "C3'" C3 C 0 1 N N S 85.903 -48.050 -7.741 0.070 -0.128 -0.369 "C3'" M3O 7 M3O "O3'" O4 O 0 1 N N N 84.982 -48.832 -8.505 1.192 -0.806 0.254 "O3'" M3O 8 M3O "C4'" C4 C 0 1 N N R 86.025 -46.641 -8.339 -0.256 1.184 0.378 "C4'" M3O 9 M3O "O4'" O5 O 0 1 N N N 87.427 -46.422 -8.588 -1.697 1.277 0.349 "O4'" M3O 10 M3O "C5'" C5 C 0 1 N N N 85.510 -45.519 -7.463 0.369 2.378 -0.347 "C5'" M3O 11 M3O "O5'" O6 O 0 1 N N N 85.337 -44.309 -8.207 0.155 3.565 0.420 "O5'" M3O 12 M3O N9 N1 N 0 1 Y N N 89.455 -47.442 -8.351 -3.547 -0.216 0.111 N9 M3O 13 M3O C8 C6 C 0 1 Y N N 89.878 -46.753 -7.282 -4.156 0.542 -0.845 C8 M3O 14 M3O N7 N2 N 0 1 Y N N 91.196 -46.802 -7.231 -5.380 0.136 -1.020 N7 M3O 15 M3O C6 C7 C 0 1 Y N N 92.854 -47.861 -8.630 -6.749 -1.723 0.055 C6 M3O 16 M3O N6 N3 N 0 1 N N N 93.910 -47.451 -7.932 -7.931 -1.536 -0.639 N6 M3O 17 M3O C5 C8 C 0 1 Y N N 91.630 -47.515 -8.238 -5.633 -0.904 -0.191 C5 M3O 18 M3O C4 C9 C 0 1 Y N N 90.560 -47.919 -8.926 -4.458 -1.146 0.541 C4 M3O 19 M3O N3 N4 N 0 1 Y N N 90.736 -48.688 -10.026 -4.444 -2.134 1.431 N3 M3O 20 M3O C2 C10 C 0 1 Y N N 91.970 -49.038 -10.420 -5.511 -2.878 1.625 C2 M3O 21 M3O N1 N5 N 0 1 Y N N 93.022 -48.625 -9.722 -6.637 -2.691 0.959 N1 M3O 22 M3O C C11 C 0 1 N N N 83.697 -48.840 -7.895 1.926 -1.615 -0.527 C M3O 23 M3O O O7 O 0 1 N N N 83.521 -48.228 -6.850 1.639 -1.752 -1.693 O M3O 24 M3O CA C12 C 0 1 N N S 82.560 -49.624 -8.547 3.106 -2.352 0.051 CA M3O 25 M3O N N6 N 0 1 N N N 82.429 -50.951 -7.941 3.440 -3.491 -0.810 N M3O 26 M3O CN C13 C 0 1 N N N 83.447 -51.804 -8.010 3.782 -3.285 -2.097 CN M3O 27 M3O OCN O8 O 0 1 N N N 83.348 -52.913 -7.517 3.814 -2.157 -2.543 OCN M3O 28 M3O CB C14 C 0 1 N N N 81.257 -48.845 -8.422 4.307 -1.408 0.134 CB M3O 29 M3O CG C15 C 0 1 N N N 80.779 -48.442 -9.814 5.467 -2.118 0.834 CG M3O 30 M3O SD S1 S 0 1 N N N 80.462 -46.645 -9.944 6.891 -0.997 0.933 SD M3O 31 M3O CE C16 C 0 1 N N N 79.929 -46.533 -11.641 8.142 -2.002 1.778 CE M3O 32 M3O H1 H1 H 0 1 N N N 86.283 -42.489 -10.397 0.431 7.032 0.770 H1 M3O 33 M3O H2 H2 H 0 1 N Y N 88.351 -43.392 -7.680 2.695 4.832 0.794 H2 M3O 34 M3O H3 H3 H 0 1 N N N 88.022 -47.987 -9.810 -2.108 -0.308 1.649 H3 M3O 35 M3O H4 H4 H 0 1 N N N 87.784 -48.679 -6.886 -1.643 -1.186 -1.208 H4 M3O 36 M3O H5 H5 H 0 1 N N N 86.855 -50.557 -7.885 -1.733 -2.721 0.650 H5 M3O 37 M3O H6 H6 H 0 1 N N N 85.615 -47.993 -6.681 0.282 0.072 -1.419 H6 M3O 38 M3O H7 H7 H 0 1 N N N 85.475 -46.622 -9.291 0.103 1.135 1.406 H7 M3O 39 M3O H8 H8 H 0 1 N N N 84.542 -45.816 -7.034 1.439 2.211 -0.467 H8 M3O 40 M3O H9 H9 H 0 1 N N N 86.231 -45.340 -6.652 -0.094 2.491 -1.327 H9 M3O 41 M3O H10 H10 H 0 1 N N N 89.242 -46.240 -6.576 -3.691 1.358 -1.377 H10 M3O 42 M3O H11 H11 H 0 1 N N N 94.746 -47.799 -8.356 -7.997 -0.833 -1.304 H11 M3O 43 M3O H12 H12 H 0 1 N N N 93.934 -46.451 -7.920 -8.694 -2.108 -0.460 H12 M3O 44 M3O H13 H13 H 0 1 N N N 92.107 -49.651 -11.298 -5.466 -3.672 2.356 H13 M3O 45 M3O H14 H14 H 0 1 N N N 82.791 -49.740 -9.616 2.857 -2.712 1.049 H14 M3O 46 M3O H15 H15 H 0 1 N N N 81.582 -51.213 -7.479 3.414 -4.392 -0.453 H15 M3O 47 M3O H16 H16 H 0 1 N N N 84.362 -51.513 -8.504 4.028 -4.124 -2.731 H16 M3O 48 M3O H17 H17 H 0 1 N N N 81.424 -47.943 -7.815 4.611 -1.118 -0.872 H17 M3O 49 M3O H18 H18 H 0 1 N N N 80.496 -49.476 -7.940 4.030 -0.518 0.700 H18 M3O 50 M3O H19 H19 H 0 1 N N N 79.848 -48.983 -10.039 5.163 -2.408 1.839 H19 M3O 51 M3O H20 H20 H 0 1 N N N 81.551 -48.719 -10.547 5.744 -3.007 0.267 H20 M3O 52 M3O H21 H21 H 0 1 N N N 79.694 -45.486 -11.884 9.057 -1.420 1.894 H21 M3O 53 M3O H22 H22 H 0 1 N N N 80.732 -46.891 -12.302 7.771 -2.295 2.760 H22 M3O 54 M3O H23 H23 H 0 1 N N N 79.032 -47.153 -11.785 8.352 -2.894 1.188 H23 M3O 55 M3O OP1 O9 O 0 1 N N N 87.061 -44.054 -10.047 0.169 5.314 -1.400 OP1 M3O 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M3O CE SD SING N N 1 M3O C2 N3 DOUB Y N 2 M3O C2 N1 SING Y N 3 M3O N3 C4 SING Y N 4 M3O SD CG SING N N 5 M3O CG CB SING N N 6 M3O N1 C6 DOUB Y N 7 M3O OP2 P SING N N 8 M3O C4 N9 SING Y N 9 M3O C4 C5 DOUB Y N 10 M3O "C1'" "O4'" SING N N 11 M3O "C1'" N9 SING N N 12 M3O "C1'" "C2'" SING N N 13 M3O P "O5'" SING N N 14 M3O P OP3 SING N N 15 M3O C6 C5 SING Y N 16 M3O C6 N6 SING N N 17 M3O "O4'" "C4'" SING N N 18 M3O CA CB SING N N 19 M3O CA N SING N N 20 M3O CA C SING N N 21 M3O "O3'" C SING N N 22 M3O "O3'" "C3'" SING N N 23 M3O "O2'" "C2'" SING N N 24 M3O N9 C8 SING Y N 25 M3O "C4'" "C3'" SING N N 26 M3O "C4'" "C5'" SING N N 27 M3O C5 N7 SING Y N 28 M3O "O5'" "C5'" SING N N 29 M3O CN N SING N N 30 M3O CN OCN DOUB N N 31 M3O C O DOUB N N 32 M3O "C2'" "C3'" SING N N 33 M3O C8 N7 DOUB Y N 34 M3O OP2 H1 SING N N 35 M3O OP3 H2 SING N N 36 M3O "C1'" H3 SING N N 37 M3O "C2'" H4 SING N N 38 M3O "O2'" H5 SING N N 39 M3O "C3'" H6 SING N N 40 M3O "C4'" H7 SING N N 41 M3O "C5'" H8 SING N N 42 M3O "C5'" H9 SING N N 43 M3O C8 H10 SING N N 44 M3O N6 H11 SING N N 45 M3O N6 H12 SING N N 46 M3O C2 H13 SING N N 47 M3O CA H14 SING N N 48 M3O N H15 SING N N 49 M3O CN H16 SING N N 50 M3O CB H17 SING N N 51 M3O CB H18 SING N N 52 M3O CG H19 SING N N 53 M3O CG H20 SING N N 54 M3O CE H21 SING N N 55 M3O CE H22 SING N N 56 M3O CE H23 SING N N 57 M3O P OP1 DOUB N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M3O SMILES ACDLabs 12.01 "P(OCC1C(C(C(O1)n2cnc3c(N)ncnc23)O)OC(=O)C(CCSC)NC=O)(O)(=O)O" M3O InChI InChI 1.03 "InChI=1S/C16H23N6O9PS/c1-33-3-2-8(21-7-23)16(25)31-12-9(4-29-32(26,27)28)30-15(11(12)24)22-6-20-10-13(17)18-5-19-14(10)22/h5-9,11-12,15,24H,2-4H2,1H3,(H,21,23)(H2,17,18,19)(H2,26,27,28)/t8-,9+,11+,12+,15+/m0/s1" M3O InChIKey InChI 1.03 NXOGAYJSSKEKJM-OPYVMVOTSA-N M3O SMILES_CANONICAL CACTVS 3.385 "CSCC[C@H](NC=O)C(=O)O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23" M3O SMILES CACTVS 3.385 "CSCC[CH](NC=O)C(=O)O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23" M3O SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CSCC[C@@H](C(=O)O[C@@H]1[C@H](O[C@H]([C@@H]1O)n2cnc3c2ncnc3N)COP(=O)(O)O)NC=O" M3O SMILES "OpenEye OEToolkits" 1.9.2 "CSCCC(C(=O)OC1C(OC(C1O)n2cnc3c2ncnc3N)COP(=O)(O)O)NC=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M3O "SYSTEMATIC NAME" ACDLabs 12.01 ;3'-O-(N-formyl-L-methionyl)adenosine 5'-(dihydrogen phosphate) ; M3O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2S)-2-formamido-4-methylsulfanyl-butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M3O "Create component" 2015-04-06 RCSB M3O "Initial release" 2015-06-03 RCSB #